RNA–Protein interactions for RNA: ENST00000542830.5

LTBR-210, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 539 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-210ENST00000542830 NISCHQ9Y2I1 1504 aa42.97■■■■■ 4.47
LTBR-210ENST00000542830 CCDC180Q9P1Z9 1646 aa38.38■■■■□ 3.73
LTBR-210ENST00000542830 ABCC9O60706 1549 aa37.9■■■■□ 3.66
LTBR-210ENST00000542830 RB1CC1Q8TDY2 1594 aa36.32■■■■□ 3.41
LTBR-210ENST00000542830 NACADO15069 1562 aa36.2■■■■□ 3.39
LTBR-210ENST00000542830 DCAF8L2P0C7V8 631 aa36.06■■■■□ 3.36
LTBR-210ENST00000542830 MYO15BQ96JP2 1530 aa35.88■■■■□ 3.33
LTBR-210ENST00000542830 ZCCHC6Q5VYS8 1495 aaKnown RBP35.72■■■■□ 3.31
LTBR-210ENST00000542830 DCAF1Q9Y4B6 1507 aa35.57■■■■□ 3.29
LTBR-210ENST00000542830 UNC13AQ9UPW8 1703 aa35.4■■■■□ 3.26
LTBR-210ENST00000542830 PABPN1Q86U42 306 aaKnown RBP eCLIP35.35■■■■□ 3.25
LTBR-210ENST00000542830 BICRAQ9NZM4 1560 aa35.18■■■■□ 3.22
LTBR-210ENST00000542830 DNAJC5BQ9UF47 199 aa35.1■■■■□ 3.21
LTBR-210ENST00000542830 SCRIBQ14160 1630 aa34.95■■■■□ 3.18
LTBR-210ENST00000542830 SHROOM4Q9ULL8 1493 aa34.89■■■■□ 3.18
LTBR-210ENST00000542830 EIF4G1Q04637 1599 aaKnown RBP34.32■■■■□ 3.09
LTBR-210ENST00000542830 CC2D2AQ9P2K1 1620 aa34.26■■■■□ 3.08
LTBR-210ENST00000542830 CECR2Q9BXF3 1484 aa34.12■■■■□ 3.05
LTBR-210ENST00000542830 NCAPD3P42695 1498 aa33.41■■■□□ 2.94
LTBR-210ENST00000542830 SMARCA4P51532 1647 aa33.41■■■□□ 2.94
LTBR-210ENST00000542830 BAZ1AQ9NRL2 1556 aaPredicted RBP33.35■■■□□ 2.93
LTBR-210ENST00000542830 ATAD2BQ9ULI0 1458 aa33.35■■■□□ 2.93
LTBR-210ENST00000542830 SMARCA2P51531 1590 aa33.31■■■□□ 2.92
LTBR-210ENST00000542830 HMGXB3Q12766 1538 aa33.2■■■□□ 2.91
LTBR-210ENST00000542830 PEG3Q9GZU2 1588 aa33.11■■■□□ 2.89
LTBR-210ENST00000542830 MROH2BQ7Z745 1585 aa33.09■■■□□ 2.89
LTBR-210ENST00000542830 BAZ1BQ9UIG0 1483 aaKnown RBP33.06■■■□□ 2.88
LTBR-210ENST00000542830 ERCC6Q03468 1493 aa32.74■■■□□ 2.83
LTBR-210ENST00000542830 WIZO95785 1651 aa32.69■■■□□ 2.82
LTBR-210ENST00000542830 NESP48681 1621 aa32.66■■■□□ 2.82
LTBR-210ENST00000542830 RSF1Q96T23 1441 aaPredicted RBP32.6■■■□□ 2.81
LTBR-210ENST00000542830 LAMC3Q9Y6N6 1575 aa32.58■■■□□ 2.81
LTBR-210ENST00000542830 CUX2O14529 1486 aa32.55■■■□□ 2.8
LTBR-210ENST00000542830 CADPSQ9ULU8 1353 aa32.42■■■□□ 2.78
LTBR-210ENST00000542830 PDS5BQ9NTI5 1447 aa32.41■■■□□ 2.78
LTBR-210ENST00000542830 TOP2AP11388 1531 aaKnown RBP32.36■■■□□ 2.77
LTBR-210ENST00000542830 THOC2Q8NI27 1593 aaKnown RBP32.26■■■□□ 2.75
LTBR-210ENST00000542830 KIF21AQ7Z4S6 1674 aa32.24■■■□□ 2.75
LTBR-210ENST00000542830 CFTRP13569 1480 aa32.14■■■□□ 2.74
LTBR-210ENST00000542830 MRC2Q9UBG0 1479 aa32.07■■■□□ 2.72
LTBR-210ENST00000542830 CEP164Q9UPV0 1460 aa32.03■■■□□ 2.72
LTBR-210ENST00000542830 FANCD2Q9BXW9 1451 aa32.03■■■□□ 2.72
LTBR-210ENST00000542830 DNAJC5Q9H3Z4 198 aa31.98■■■□□ 2.71
LTBR-210ENST00000542830 CCDC88BA6NC98 1476 aa31.97■■■□□ 2.71
LTBR-210ENST00000542830 WDR62O43379 1518 aa31.96■■■□□ 2.71
LTBR-210ENST00000542830 PRDM2Q13029 1718 aa31.81■■■□□ 2.68
LTBR-210ENST00000542830 URB2Q14146 1524 aaKnown RBP31.7■■■□□ 2.67
LTBR-210ENST00000542830 ABCC8Q09428 1581 aa31.5■■■□□ 2.63
LTBR-210ENST00000542830 TOPBP1Q92547 1522 aa31.46■■■□□ 2.63
LTBR-210ENST00000542830 SUPT5HO00267 1087 aaKnown RBP31.46■■■□□ 2.63
LTBR-210ENST00000542830 DNMBPQ6XZF7 1577 aa31.4■■■□□ 2.62
LTBR-210ENST00000542830 IFT140Q96RY7 1462 aa31.39■■■□□ 2.62
LTBR-210ENST00000542830 ZNF608Q9ULD9 1512 aaPredicted RBP31.23■■■□□ 2.59
LTBR-210ENST00000542830 POLA1P09884 1462 aaPredicted RBP31.17■■■□□ 2.58
LTBR-210ENST00000542830 OSCARQ8IYS5 282 aa31.13■■■□□ 2.57
LTBR-210ENST00000542830 TARBP1Q13395 1621 aaKnown RBP31.13■■■□□ 2.57
LTBR-210ENST00000542830 EIF4G3O43432 1585 aaKnown RBP31.09■■■□□ 2.57
LTBR-210ENST00000542830 CUX1P39880 1505 aa31.07■■■□□ 2.56
LTBR-210ENST00000542830 SOGA1O94964 1423 aa31.06■■■□□ 2.56
LTBR-210ENST00000542830 FGD5Q6ZNL6 1462 aa31.03■■■□□ 2.56
LTBR-210ENST00000542830 RAD54L2Q9Y4B4 1467 aa31.02■■■□□ 2.56
LTBR-210ENST00000542830 AQRO60306 1485 aaKnown RBP eCLIP31.01■■■□□ 2.563e-7■■■■□ 25.1
LTBR-210ENST00000542830 WDR97A6NE52 1622 aa30.93■■■□□ 2.54
LTBR-210ENST00000542830 TDRD9Q8NDG6 1382 aaKnown RBP30.91■■■□□ 2.54
LTBR-210ENST00000542830 WRNQ14191 1432 aaPredicted RBP eCLIP30.76■■■□□ 2.51
LTBR-210ENST00000542830 CHD1O14646 1710 aa30.75■■■□□ 2.51
LTBR-210ENST00000542830 GRIN2BQ13224 1484 aa30.75■■■□□ 2.51
LTBR-210ENST00000542830 FBLN2P98095 1184 aa30.74■■■□□ 2.51
LTBR-210ENST00000542830 TRIM41Q8WV44 630 aa30.74■■■□□ 2.51
LTBR-210ENST00000542830 ABCA10Q8WWZ4 1543 aa30.73■■■□□ 2.51
LTBR-210ENST00000542830 SNAPC4Q5SXM2 1469 aa30.73■■■□□ 2.51
LTBR-210ENST00000542830 MAGI1Q96QZ7 1491 aaPredicted RBP30.71■■■□□ 2.51
LTBR-210ENST00000542830 TOP2BQ02880 1626 aa30.71■■■□□ 2.51
LTBR-210ENST00000542830 BIVM-ERCC5R4GMW8 1640 aa30.7■■■□□ 2.51
LTBR-210ENST00000542830 GAPVD1Q14C86 1478 aa30.7■■■□□ 2.5
LTBR-210ENST00000542830 SYNJ1O43426 1573 aa30.65■■■□□ 2.5
LTBR-210ENST00000542830 CHMP7Q8WUX9 453 aaPredicted RBP30.63■■■□□ 2.49
LTBR-210ENST00000542830 ABCA5Q8WWZ7 1642 aa30.62■■■□□ 2.49
LTBR-210ENST00000542830 RIMBP3CA6NJZ7 1639 aa30.61■■■□□ 2.49
LTBR-210ENST00000542830 RIMBP3BA6NNM3 1639 aa30.61■■■□□ 2.49
LTBR-210ENST00000542830 RIMBP3Q9UFD9 1639 aa30.61■■■□□ 2.49
LTBR-210ENST00000542830 PBRM1Q86U86 1689 aa30.6■■■□□ 2.49
LTBR-210ENST00000542830 ARHGEF11O15085 1522 aa30.59■■■□□ 2.49
LTBR-210ENST00000542830 SYNJ2O15056 1496 aa30.59■■■□□ 2.49
LTBR-210ENST00000542830 CLASP1Q7Z460 1538 aa30.45■■■□□ 2.47
LTBR-210ENST00000542830 ERICH3Q5RHP9 1530 aa30.37■■■□□ 2.45
LTBR-210ENST00000542830 ADAMTS12P58397 1594 aa30.37■■■□□ 2.45
LTBR-210ENST00000542830 CYB5RLQ6IPT4 315 aa30.34■■■□□ 2.45
LTBR-210ENST00000542830 GRIN2AQ12879 1464 aa30.33■■■□□ 2.45
LTBR-210ENST00000542830 FHAD1B1AJZ9 1412 aa30.33■■■□□ 2.45
LTBR-210ENST00000542830 ARAP1Q96P48 1450 aa30.31■■■□□ 2.44
LTBR-210ENST00000542830 NUP160Q12769 1436 aa30.22■■■□□ 2.43
LTBR-210ENST00000542830 KIF27Q86VH2 1401 aa30.17■■■□□ 2.42
LTBR-210ENST00000542830 CEP170Q5SW79 1584 aa30.16■■■□□ 2.42
LTBR-210ENST00000542830 IGF1RP08069 1367 aa30.07■■■□□ 2.4
LTBR-210ENST00000542830 CUL7Q14999 1698 aa30.01■■■□□ 2.39
LTBR-210ENST00000542830 SHROOM2Q13796 1616 aa30■■■□□ 2.39
LTBR-210ENST00000542830 ERCC6L2Q5T890 1561 aa29.95■■■□□ 2.39
LTBR-210ENST00000542830 JPH4Q96JJ6 628 aa29.93■■■□□ 2.38
LTBR-210ENST00000542830 RUSC2Q8N2Y8 1516 aa29.91■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms