RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 AEBP2Q6ZN18 517 aaPredicted RBP31.62■■■□□ 2.65
VPS33A-207ENST00000542790 CHIC1Q5VXU3 224 aa30.43■■■□□ 2.46
VPS33A-207ENST00000542790 NISCHQ9Y2I1 1504 aa29.8■■■□□ 2.36
VPS33A-207ENST00000542790 PHF23Q9BUL5 403 aaPredicted RBP26.81■■□□□ 1.88
VPS33A-207ENST00000542790 SENP3Q9H4L4 574 aaPredicted RBP26.74■■□□□ 1.87
VPS33A-207ENST00000542790 CCDC180Q9P1Z9 1646 aa26.35■■□□□ 1.81
VPS33A-207ENST00000542790 ABCC9O60706 1549 aa25.81■■□□□ 1.72
VPS33A-207ENST00000542790 DCAF8L2P0C7V8 631 aa24.98■■□□□ 1.59
VPS33A-207ENST00000542790 FOXD1Q16676 465 aa24.96■■□□□ 1.59
VPS33A-207ENST00000542790 NACADO15069 1562 aa24.84■■□□□ 1.57
VPS33A-207ENST00000542790 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
VPS33A-207ENST00000542790 ZCCHC6Q5VYS8 1495 aaKnown RBP24.82■■□□□ 1.56
VPS33A-207ENST00000542790 MYO15BQ96JP2 1530 aa24.75■■□□□ 1.55
VPS33A-207ENST00000542790 DCAF1Q9Y4B6 1507 aa24.66■■□□□ 1.54
VPS33A-207ENST00000542790 PLPPR3Q6T4P5 718 aa24.48■■□□□ 1.51
VPS33A-207ENST00000542790 PABPN1Q86U42 306 aaKnown RBP eCLIP24.2■■□□□ 1.46
VPS33A-207ENST00000542790 SCRIBQ14160 1630 aa24.08■■□□□ 1.45
VPS33A-207ENST00000542790 UNC13AQ9UPW8 1703 aa24.07■■□□□ 1.44
VPS33A-207ENST00000542790 BICRAQ9NZM4 1560 aa24.03■■□□□ 1.44
VPS33A-207ENST00000542790 SHROOM4Q9ULL8 1493 aa23.87■■□□□ 1.41
VPS33A-207ENST00000542790 PPP6R1Q9UPN7 881 aa23.79■■□□□ 1.4
VPS33A-207ENST00000542790 ADRA2BP18089 450 aa23.71■■□□□ 1.39
VPS33A-207ENST00000542790 DNAJC5BQ9UF47 199 aa23.66■■□□□ 1.38
VPS33A-207ENST00000542790 EIF4G1Q04637 1599 aaKnown RBP23.44■■□□□ 1.34
VPS33A-207ENST00000542790 PIAS4Q8N2W9 510 aaPredicted RBP23.39■■□□□ 1.33
VPS33A-207ENST00000542790 CC2D2AQ9P2K1 1620 aa23.3■■□□□ 1.32
VPS33A-207ENST00000542790 CECR2Q9BXF3 1484 aa23.2■■□□□ 1.3
VPS33A-207ENST00000542790 BAZ1AQ9NRL2 1556 aaPredicted RBP23.08■■□□□ 1.29
VPS33A-207ENST00000542790 MSH5O43196 834 aa23.04■■□□□ 1.28
VPS33A-207ENST00000542790 SMARCA4P51532 1647 aa23.04■■□□□ 1.28
VPS33A-207ENST00000542790 NCAPD3P42695 1498 aa22.98■■□□□ 1.27
VPS33A-207ENST00000542790 ATAD2BQ9ULI0 1458 aa22.98■■□□□ 1.27
VPS33A-207ENST00000542790 MROH2BQ7Z745 1585 aa22.94■■□□□ 1.26
VPS33A-207ENST00000542790 SMARCA2P51531 1590 aa22.93■■□□□ 1.26
VPS33A-207ENST00000542790 PEG3Q9GZU2 1588 aa22.84■■□□□ 1.25
VPS33A-207ENST00000542790 HMGXB3Q12766 1538 aa22.8■■□□□ 1.24
VPS33A-207ENST00000542790 BAZ1BQ9UIG0 1483 aaKnown RBP22.79■■□□□ 1.24
VPS33A-207ENST00000542790 RSF1Q96T23 1441 aaPredicted RBP22.76■■□□□ 1.23
VPS33A-207ENST00000542790 WIZO95785 1651 aa22.64■■□□□ 1.21
VPS33A-207ENST00000542790 TOP2AP11388 1531 aaKnown RBP22.46■■□□□ 1.19
VPS33A-207ENST00000542790 NESP48681 1621 aa22.33■■□□□ 1.17
VPS33A-207ENST00000542790 CADPSQ9ULU8 1353 aa22.33■■□□□ 1.17
VPS33A-207ENST00000542790 SUPT5HO00267 1087 aaKnown RBP22.3■■□□□ 1.16
VPS33A-207ENST00000542790 LAMC3Q9Y6N6 1575 aa22.29■■□□□ 1.16
VPS33A-207ENST00000542790 ERCC6Q03468 1493 aa22.27■■□□□ 1.16
VPS33A-207ENST00000542790 CCDC88BA6NC98 1476 aa22.23■■□□□ 1.15
VPS33A-207ENST00000542790 PDS5BQ9NTI5 1447 aa22.23■■□□□ 1.15
VPS33A-207ENST00000542790 CFTRP13569 1480 aa22.18■■□□□ 1.14
VPS33A-207ENST00000542790 FANCD2Q9BXW9 1451 aa22.03■■□□□ 1.12
VPS33A-207ENST00000542790 CUX2O14529 1486 aa21.98■■□□□ 1.11
VPS33A-207ENST00000542790 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
VPS33A-207ENST00000542790 KIF21AQ7Z4S6 1674 aa21.95■■□□□ 1.1
VPS33A-207ENST00000542790 MRC2Q9UBG0 1479 aa21.94■■□□□ 1.1
VPS33A-207ENST00000542790 THOC2Q8NI27 1593 aaKnown RBP21.91■■□□□ 1.1
VPS33A-207ENST00000542790 WDR62O43379 1518 aa21.83■■□□□ 1.09
VPS33A-207ENST00000542790 PRDM2Q13029 1718 aa21.79■■□□□ 1.08
VPS33A-207ENST00000542790 URB2Q14146 1524 aaKnown RBP21.77■■□□□ 1.08
VPS33A-207ENST00000542790 POTEDQ86YR6 584 aa21.73■■□□□ 1.07
VPS33A-207ENST00000542790 ABCC8Q09428 1581 aa21.72■■□□□ 1.07
VPS33A-207ENST00000542790 TOPBP1Q92547 1522 aa21.66■■□□□ 1.06
VPS33A-207ENST00000542790 MAPK8IP2Q13387 824 aaPredicted RBP21.65■■□□□ 1.06
VPS33A-207ENST00000542790 DNMBPQ6XZF7 1577 aa21.62■■□□□ 1.05
VPS33A-207ENST00000542790 PPP4R3CPQ6ZMV5 832 aa21.58■■□□□ 1.05
VPS33A-207ENST00000542790 IFT140Q96RY7 1462 aa21.54■■□□□ 1.04
VPS33A-207ENST00000542790 SCAF1Q9H7N4 1312 aaKnown RBP21.52■■□□□ 1.03
VPS33A-207ENST00000542790 CUX1P39880 1505 aa21.51■■□□□ 1.03
VPS33A-207ENST00000542790 POLA1P09884 1462 aaPredicted RBP21.49■■□□□ 1.03
VPS33A-207ENST00000542790 WRNQ14191 1432 aaPredicted RBP eCLIP21.47■■□□□ 1.03
VPS33A-207ENST00000542790 SOGA1O94964 1423 aa21.46■■□□□ 1.03
VPS33A-207ENST00000542790 FGD5Q6ZNL6 1462 aa21.45■■□□□ 1.02
VPS33A-207ENST00000542790 ZNF608Q9ULD9 1512 aaPredicted RBP21.4■■□□□ 1.02
VPS33A-207ENST00000542790 RAD54L2Q9Y4B4 1467 aa21.4■■□□□ 1.02
VPS33A-207ENST00000542790 TARBP1Q13395 1621 aaKnown RBP21.37■■□□□ 1.01
VPS33A-207ENST00000542790 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
VPS33A-207ENST00000542790 TOP2BQ02880 1626 aa21.33■■□□□ 1.01
VPS33A-207ENST00000542790 DMRT2Q9Y5R5 561 aa21.33■■□□□ 1.01
VPS33A-207ENST00000542790 AQRO60306 1485 aaKnown RBP eCLIP21.32■■□□□ 1
VPS33A-207ENST00000542790 SYNJ1O43426 1573 aa21.31■■□□□ 1
VPS33A-207ENST00000542790 DNAJC5Q9H3Z4 198 aa21.29■■□□□ 1
VPS33A-207ENST00000542790 BIVM-ERCC5R4GMW8 1640 aa21.29■■□□□ 1
VPS33A-207ENST00000542790 EIF4G3O43432 1585 aaKnown RBP21.26■□□□□ 0.99
VPS33A-207ENST00000542790 ABCA10Q8WWZ4 1543 aa21.25■□□□□ 0.99
VPS33A-207ENST00000542790 WDR97A6NE52 1622 aa21.22■□□□□ 0.99
VPS33A-207ENST00000542790 OSCARQ8IYS5 282 aa21.19■□□□□ 0.98
VPS33A-207ENST00000542790 GAPVD1Q14C86 1478 aa21.19■□□□□ 0.98
VPS33A-207ENST00000542790 GRIN2BQ13224 1484 aa21.18■□□□□ 0.98
VPS33A-207ENST00000542790 FBLN2P98095 1184 aa21.12■□□□□ 0.97
VPS33A-207ENST00000542790 SNAPC4Q5SXM2 1469 aa21.1■□□□□ 0.97
VPS33A-207ENST00000542790 TRIM41Q8WV44 630 aa21.1■□□□□ 0.97
VPS33A-207ENST00000542790 MAGI1Q96QZ7 1491 aaPredicted RBP21.09■□□□□ 0.97
VPS33A-207ENST00000542790 ABCA5Q8WWZ7 1642 aa21.08■□□□□ 0.97
VPS33A-207ENST00000542790 CHMP7Q8WUX9 453 aaPredicted RBP21.08■□□□□ 0.97
VPS33A-207ENST00000542790 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
VPS33A-207ENST00000542790 SYNJ2O15056 1496 aa21.02■□□□□ 0.96
VPS33A-207ENST00000542790 CNKSR2Q8WXI2 1034 aa21.01■□□□□ 0.95
VPS33A-207ENST00000542790 ERICH3Q5RHP9 1530 aa20.99■□□□□ 0.95
VPS33A-207ENST00000542790 PBRM1Q86U86 1689 aa20.97■□□□□ 0.95
VPS33A-207ENST00000542790 FHAD1B1AJZ9 1412 aa20.96■□□□□ 0.95
VPS33A-207ENST00000542790 IGF1RP08069 1367 aa20.95■□□□□ 0.94
VPS33A-207ENST00000542790 CHD1O14646 1710 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms