RNA–Protein interactions for RNA: ENST00000542714.5

CHFR-221, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 4

Gene CHFR, Length 542 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-221ENST00000542714 NISCHQ9Y2I1 1504 aa30.8■■■□□ 2.52
CHFR-221ENST00000542714 CCDC180Q9P1Z9 1646 aa27.04■■□□□ 1.92
CHFR-221ENST00000542714 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
CHFR-221ENST00000542714 ABCC9O60706 1549 aa25.63■■□□□ 1.69
CHFR-221ENST00000542714 DCAF1Q9Y4B6 1507 aa25.49■■□□□ 1.67
CHFR-221ENST00000542714 DCAF8L2P0C7V8 631 aa25.29■■□□□ 1.64
CHFR-221ENST00000542714 MYO15BQ96JP2 1530 aa25.26■■□□□ 1.63
CHFR-221ENST00000542714 NACADO15069 1562 aa25.16■■□□□ 1.62
CHFR-221ENST00000542714 RB1CC1Q8TDY2 1594 aa24.99■■□□□ 1.59
CHFR-221ENST00000542714 SHROOM4Q9ULL8 1493 aa24.87■■□□□ 1.57
CHFR-221ENST00000542714 SCRIBQ14160 1630 aa24.77■■□□□ 1.56
CHFR-221ENST00000542714 UNC13AQ9UPW8 1703 aa24.61■■□□□ 1.53
CHFR-221ENST00000542714 BICRAQ9NZM4 1560 aa24.31■■□□□ 1.48
CHFR-221ENST00000542714 PABPN1Q86U42 306 aaKnown RBP eCLIP24.07■■□□□ 1.44
CHFR-221ENST00000542714 CECR2Q9BXF3 1484 aa23.94■■□□□ 1.42
CHFR-221ENST00000542714 MROH2BQ7Z745 1585 aa23.79■■□□□ 1.4
CHFR-221ENST00000542714 BAZ1AQ9NRL2 1556 aaPredicted RBP23.78■■□□□ 1.4
CHFR-221ENST00000542714 RSF1Q96T23 1441 aaPredicted RBP23.78■■□□□ 1.4
CHFR-221ENST00000542714 SUPT5HO00267 1087 aaKnown RBP23.76■■□□□ 1.39
CHFR-221ENST00000542714 SMARCA4P51532 1647 aa23.76■■□□□ 1.39
CHFR-221ENST00000542714 WIZO95785 1651 aa23.61■■□□□ 1.37
CHFR-221ENST00000542714 EIF4G1Q04637 1599 aaKnown RBP23.54■■□□□ 1.36
CHFR-221ENST00000542714 PEG3Q9GZU2 1588 aa23.48■■□□□ 1.35
CHFR-221ENST00000542714 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
CHFR-221ENST00000542714 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
CHFR-221ENST00000542714 TOP2AP11388 1531 aaKnown RBP23.35■■□□□ 1.33
CHFR-221ENST00000542714 CC2D2AQ9P2K1 1620 aa23.25■■□□□ 1.31
CHFR-221ENST00000542714 BAZ1BQ9UIG0 1483 aaKnown RBP23.2■■□□□ 1.3
CHFR-221ENST00000542714 HMGXB3Q12766 1538 aa23.19■■□□□ 1.3
CHFR-221ENST00000542714 NCAPD3P42695 1498 aa23.19■■□□□ 1.3
CHFR-221ENST00000542714 CCDC88BA6NC98 1476 aa23.06■■□□□ 1.28
CHFR-221ENST00000542714 DNAJC5BQ9UF47 199 aa22.78■■□□□ 1.24
CHFR-221ENST00000542714 CHIC1Q5VXU3 224 aa22.7■■□□□ 1.22
CHFR-221ENST00000542714 PRDM2Q13029 1718 aa22.65■■□□□ 1.22
CHFR-221ENST00000542714 CFTRP13569 1480 aa22.62■■□□□ 1.21
CHFR-221ENST00000542714 CADPSQ9ULU8 1353 aa22.54■■□□□ 1.2
CHFR-221ENST00000542714 ABCC8Q09428 1581 aa22.54■■□□□ 1.2
CHFR-221ENST00000542714 LAMC3Q9Y6N6 1575 aa22.47■■□□□ 1.19
CHFR-221ENST00000542714 NESP48681 1621 aa22.47■■□□□ 1.19
CHFR-221ENST00000542714 SYNJ1O43426 1573 aa22.37■■□□□ 1.17
CHFR-221ENST00000542714 WRNQ14191 1432 aaPredicted RBP eCLIP22.36■■□□□ 1.171e-6■■■■■ 52.5
CHFR-221ENST00000542714 TRIM41Q8WV44 630 aa22.35■■□□□ 1.17
CHFR-221ENST00000542714 FANCD2Q9BXW9 1451 aa22.33■■□□□ 1.16
CHFR-221ENST00000542714 BIVM-ERCC5R4GMW8 1640 aa22.31■■□□□ 1.16
CHFR-221ENST00000542714 TOP2BQ02880 1626 aa22.28■■□□□ 1.16
CHFR-221ENST00000542714 KIF21AQ7Z4S6 1674 aa22.28■■□□□ 1.16
CHFR-221ENST00000542714 CUX1P39880 1505 aa22.27■■□□□ 1.16
CHFR-221ENST00000542714 PDS5BQ9NTI5 1447 aa22.22■■□□□ 1.15
CHFR-221ENST00000542714 CEP164Q9UPV0 1460 aa22.21■■□□□ 1.15
CHFR-221ENST00000542714 DNMBPQ6XZF7 1577 aa22.14■■□□□ 1.13
CHFR-221ENST00000542714 URB2Q14146 1524 aaKnown RBP22.11■■□□□ 1.13
CHFR-221ENST00000542714 TOPBP1Q92547 1522 aa22.09■■□□□ 1.13
CHFR-221ENST00000542714 SOGA1O94964 1423 aa22.03■■□□□ 1.12
CHFR-221ENST00000542714 FGD5Q6ZNL6 1462 aa22.03■■□□□ 1.12
CHFR-221ENST00000542714 MRC2Q9UBG0 1479 aa22.02■■□□□ 1.12
CHFR-221ENST00000542714 RUSC2Q8N2Y8 1516 aa21.99■■□□□ 1.11
CHFR-221ENST00000542714 THOC2Q8NI27 1593 aaKnown RBP21.96■■□□□ 1.11
CHFR-221ENST00000542714 POLA1P09884 1462 aaPredicted RBP21.96■■□□□ 1.11
CHFR-221ENST00000542714 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
CHFR-221ENST00000542714 FAM9AQ8IZU1 332 aaPredicted RBP21.94■■□□□ 1.1
CHFR-221ENST00000542714 WDR62O43379 1518 aa21.94■■□□□ 1.1
CHFR-221ENST00000542714 EEA1Q15075 1411 aa21.92■■□□□ 1.1
CHFR-221ENST00000542714 WDR97A6NE52 1622 aa21.9■■□□□ 1.1
CHFR-221ENST00000542714 RAD54L2Q9Y4B4 1467 aa21.87■■□□□ 1.09
CHFR-221ENST00000542714 ABCA10Q8WWZ4 1543 aa21.84■■□□□ 1.09
CHFR-221ENST00000542714 TARBP1Q13395 1621 aaKnown RBP21.83■■□□□ 1.08
CHFR-221ENST00000542714 CUX2O14529 1486 aa21.82■■□□□ 1.08
CHFR-221ENST00000542714 KIF27Q86VH2 1401 aa21.8■■□□□ 1.08
CHFR-221ENST00000542714 LOC105371045A0A1W2PR82 267 aa21.79■■□□□ 1.08
CHFR-221ENST00000542714 CSRNP3Q8WYN3 585 aa21.77■■□□□ 1.08
CHFR-221ENST00000542714 KIF21BO75037 1637 aa21.74■■□□□ 1.07
CHFR-221ENST00000542714 ABCA5Q8WWZ7 1642 aa21.73■■□□□ 1.07
CHFR-221ENST00000542714 IFT140Q96RY7 1462 aa21.69■■□□□ 1.06
CHFR-221ENST00000542714 PRXQ9BXM0 1461 aa21.65■■□□□ 1.06
CHFR-221ENST00000542714 IGF1RP08069 1367 aa21.63■■□□□ 1.05
CHFR-221ENST00000542714 GOLGA3Q08378 1498 aa21.63■■□□□ 1.05
CHFR-221ENST00000542714 PBRM1Q86U86 1689 aa21.63■■□□□ 1.05
CHFR-221ENST00000542714 TDRD9Q8NDG6 1382 aaKnown RBP21.62■■□□□ 1.05
CHFR-221ENST00000542714 EHMT2Q96KQ7 1210 aa21.62■■□□□ 1.05
CHFR-221ENST00000542714 ERICH3Q5RHP9 1530 aa21.61■■□□□ 1.05
CHFR-221ENST00000542714 GAPVD1Q14C86 1478 aa21.61■■□□□ 1.05
CHFR-221ENST00000542714 RAPGEF2Q9Y4G8 1499 aa21.6■■□□□ 1.05
CHFR-221ENST00000542714 ZNF608Q9ULD9 1512 aaPredicted RBP21.6■■□□□ 1.05
CHFR-221ENST00000542714 CUL7Q14999 1698 aa21.57■■□□□ 1.04
CHFR-221ENST00000542714 EIF4G3O43432 1585 aaKnown RBP21.57■■□□□ 1.04
CHFR-221ENST00000542714 AQRO60306 1485 aaKnown RBP eCLIP21.55■■□□□ 1.04
CHFR-221ENST00000542714 CARMIL1Q5VZK9 1371 aa21.51■■□□□ 1.03
CHFR-221ENST00000542714 TNIKQ9UKE5 1360 aa21.5■■□□□ 1.03
CHFR-221ENST00000542714 GRIN2BQ13224 1484 aa21.48■■□□□ 1.03
CHFR-221ENST00000542714 ADAMTS12P58397 1594 aa21.46■■□□□ 1.03
CHFR-221ENST00000542714 UBTFP17480 764 aaKnown RBP21.42■■□□□ 1.02
CHFR-221ENST00000542714 SNAPC4Q5SXM2 1469 aa21.38■■□□□ 1.01
CHFR-221ENST00000542714 CEP162Q5TB80 1403 aa21.38■■□□□ 1.01
CHFR-221ENST00000542714 FHAD1B1AJZ9 1412 aa21.37■■□□□ 1.01
CHFR-221ENST00000542714 CTTNBP2Q8WZ74 1663 aa21.35■■□□□ 1.01
CHFR-221ENST00000542714 MAGI1Q96QZ7 1491 aaPredicted RBP21.33■■□□□ 1.01
CHFR-221ENST00000542714 CLIP1P30622 1438 aa21.25■□□□□ 0.99
CHFR-221ENST00000542714 SYNJ2O15056 1496 aa21.25■□□□□ 0.99
CHFR-221ENST00000542714 GRIN2AQ12879 1464 aa21.24■□□□□ 0.99
CHFR-221ENST00000542714 CHD1O14646 1710 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms