RNA–Protein interactions for RNA: ENST00000542552.1

ECHDC2-223, Transcript of enoyl-CoA hydratase domain containing 2, humanhuman

TSL 1 (best)

Gene ECHDC2, Length 981 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC2-223ENST00000542552 NISCHQ9Y2I1 1504 aa37.92■■■■□ 3.66
ECHDC2-223ENST00000542552 CCDC180Q9P1Z9 1646 aa33.79■■■■□ 3
ECHDC2-223ENST00000542552 ABCC9O60706 1549 aa33.12■■■□□ 2.89
ECHDC2-223ENST00000542552 RB1CC1Q8TDY2 1594 aa31.83■■■□□ 2.69
ECHDC2-223ENST00000542552 NACADO15069 1562 aa31.79■■■□□ 2.68
ECHDC2-223ENST00000542552 DCAF8L2P0C7V8 631 aa31.62■■■□□ 2.65
ECHDC2-223ENST00000542552 MYO15BQ96JP2 1530 aa31.59■■■□□ 2.65
ECHDC2-223ENST00000542552 ZCCHC6Q5VYS8 1495 aaKnown RBP31.56■■■□□ 2.64
ECHDC2-223ENST00000542552 DCAF1Q9Y4B6 1507 aa31.4■■■□□ 2.62
ECHDC2-223ENST00000542552 UNC13AQ9UPW8 1703 aa31.15■■■□□ 2.58
ECHDC2-223ENST00000542552 BICRAQ9NZM4 1560 aa30.93■■■□□ 2.54
ECHDC2-223ENST00000542552 PABPN1Q86U42 306 aaKnown RBP eCLIP30.92■■■□□ 2.54
ECHDC2-223ENST00000542552 SCRIBQ14160 1630 aa30.76■■■□□ 2.51
ECHDC2-223ENST00000542552 DNAJC5BQ9UF47 199 aa30.58■■■□□ 2.49
ECHDC2-223ENST00000542552 SHROOM4Q9ULL8 1493 aa30.57■■■□□ 2.48
ECHDC2-223ENST00000542552 EIF4G1Q04637 1599 aaKnown RBP30.08■■■□□ 2.41
ECHDC2-223ENST00000542552 CC2D2AQ9P2K1 1620 aa29.99■■■□□ 2.39
ECHDC2-223ENST00000542552 CECR2Q9BXF3 1484 aa29.8■■■□□ 2.36
ECHDC2-223ENST00000542552 SMARCA4P51532 1647 aa29.45■■■□□ 2.3
ECHDC2-223ENST00000542552 BAZ1AQ9NRL2 1556 aaPredicted RBP29.39■■■□□ 2.29
ECHDC2-223ENST00000542552 NCAPD3P42695 1498 aa29.35■■■□□ 2.29
ECHDC2-223ENST00000542552 ATAD2BQ9ULI0 1458 aa29.32■■■□□ 2.28
ECHDC2-223ENST00000542552 SMARCA2P51531 1590 aa29.27■■■□□ 2.28
ECHDC2-223ENST00000542552 MROH2BQ7Z745 1585 aa29.22■■■□□ 2.27
ECHDC2-223ENST00000542552 PEG3Q9GZU2 1588 aa29.2■■■□□ 2.26
ECHDC2-223ENST00000542552 HMGXB3Q12766 1538 aa29.18■■■□□ 2.26
ECHDC2-223ENST00000542552 BAZ1BQ9UIG0 1483 aaKnown RBP29.04■■■□□ 2.24
ECHDC2-223ENST00000542552 WIZO95785 1651 aa28.89■■■□□ 2.21
ECHDC2-223ENST00000542552 RSF1Q96T23 1441 aaPredicted RBP28.84■■■□□ 2.21
ECHDC2-223ENST00000542552 NESP48681 1621 aa28.65■■■□□ 2.18
ECHDC2-223ENST00000542552 TOP2AP11388 1531 aaKnown RBP28.57■■■□□ 2.16
ECHDC2-223ENST00000542552 LAMC3Q9Y6N6 1575 aa28.57■■■□□ 2.16
ECHDC2-223ENST00000542552 ERCC6Q03468 1493 aa28.53■■■□□ 2.16
ECHDC2-223ENST00000542552 CADPSQ9ULU8 1353 aa28.46■■■□□ 2.15
ECHDC2-223ENST00000542552 PDS5BQ9NTI5 1447 aa28.36■■■□□ 2.13
ECHDC2-223ENST00000542552 CUX2O14529 1486 aa28.34■■■□□ 2.13
ECHDC2-223ENST00000542552 KIF21AQ7Z4S6 1674 aa28.32■■■□□ 2.12
ECHDC2-223ENST00000542552 CFTRP13569 1480 aa28.27■■■□□ 2.12
ECHDC2-223ENST00000542552 THOC2Q8NI27 1593 aaKnown RBP28.27■■■□□ 2.12
ECHDC2-223ENST00000542552 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
ECHDC2-223ENST00000542552 FANCD2Q9BXW9 1451 aa28.11■■■□□ 2.09
ECHDC2-223ENST00000542552 MRC2Q9UBG0 1479 aa28.08■■■□□ 2.09
ECHDC2-223ENST00000542552 CEP164Q9UPV0 1460 aa28.08■■■□□ 2.09
ECHDC2-223ENST00000542552 PRDM2Q13029 1718 aa28.06■■■□□ 2.08
ECHDC2-223ENST00000542552 WDR62O43379 1518 aa28.02■■■□□ 2.08
ECHDC2-223ENST00000542552 SUPT5HO00267 1087 aaKnown RBP27.91■■■□□ 2.06
ECHDC2-223ENST00000542552 URB2Q14146 1524 aaKnown RBP27.87■■■□□ 2.05
ECHDC2-223ENST00000542552 TOPBP1Q92547 1522 aa27.67■■■□□ 2.02
ECHDC2-223ENST00000542552 ABCC8Q09428 1581 aa27.66■■■□□ 2.02
ECHDC2-223ENST00000542552 DNAJC5Q9H3Z4 198 aa27.64■■■□□ 2.02
ECHDC2-223ENST00000542552 DNMBPQ6XZF7 1577 aa27.62■■■□□ 2.01
ECHDC2-223ENST00000542552 IFT140Q96RY7 1462 aa27.51■■■□□ 2
ECHDC2-223ENST00000542552 POLA1P09884 1462 aaPredicted RBP27.43■■□□□ 1.98
ECHDC2-223ENST00000542552 CUX1P39880 1505 aa27.41■■□□□ 1.98
ECHDC2-223ENST00000542552 ZNF608Q9ULD9 1512 aaPredicted RBP27.41■■□□□ 1.98
ECHDC2-223ENST00000542552 TARBP1Q13395 1621 aaKnown RBP27.41■■□□□ 1.98
ECHDC2-223ENST00000542552 FGD5Q6ZNL6 1462 aa27.32■■□□□ 1.96
ECHDC2-223ENST00000542552 SOGA1O94964 1423 aa27.29■■□□□ 1.96
ECHDC2-223ENST00000542552 RAD54L2Q9Y4B4 1467 aa27.29■■□□□ 1.96
ECHDC2-223ENST00000542552 EIF4G3O43432 1585 aaKnown RBP27.29■■□□□ 1.96
ECHDC2-223ENST00000542552 AQRO60306 1485 aaKnown RBP eCLIP27.23■■□□□ 1.95
ECHDC2-223ENST00000542552 WDR97A6NE52 1622 aa27.17■■□□□ 1.94
ECHDC2-223ENST00000542552 WRNQ14191 1432 aaPredicted RBP eCLIP27.16■■□□□ 1.94
ECHDC2-223ENST00000542552 BIVM-ERCC5R4GMW8 1640 aa27.16■■□□□ 1.94
ECHDC2-223ENST00000542552 TDRD9Q8NDG6 1382 aaKnown RBP27.15■■□□□ 1.94
ECHDC2-223ENST00000542552 TOP2BQ02880 1626 aa27.15■■□□□ 1.94
ECHDC2-223ENST00000542552 SYNJ1O43426 1573 aa27.13■■□□□ 1.93
ECHDC2-223ENST00000542552 OSCARQ8IYS5 282 aa27.12■■□□□ 1.93
ECHDC2-223ENST00000542552 ABCA10Q8WWZ4 1543 aa27.07■■□□□ 1.92
ECHDC2-223ENST00000542552 GRIN2BQ13224 1484 aa27■■□□□ 1.91
ECHDC2-223ENST00000542552 ABCA5Q8WWZ7 1642 aa26.98■■□□□ 1.91
ECHDC2-223ENST00000542552 CHD1O14646 1710 aa26.98■■□□□ 1.91
ECHDC2-223ENST00000542552 GAPVD1Q14C86 1478 aa26.98■■□□□ 1.91
ECHDC2-223ENST00000542552 SNAPC4Q5SXM2 1469 aa26.96■■□□□ 1.91
ECHDC2-223ENST00000542552 MAGI1Q96QZ7 1491 aaPredicted RBP26.94■■□□□ 1.9
ECHDC2-223ENST00000542552 PBRM1Q86U86 1689 aa26.94■■□□□ 1.9
ECHDC2-223ENST00000542552 FBLN2P98095 1184 aa26.86■■□□□ 1.89
ECHDC2-223ENST00000542552 SYNJ2O15056 1496 aa26.84■■□□□ 1.89
ECHDC2-223ENST00000542552 CHMP7Q8WUX9 453 aaPredicted RBP26.8■■□□□ 1.88
ECHDC2-223ENST00000542552 ERICH3Q5RHP9 1530 aa26.75■■□□□ 1.87
ECHDC2-223ENST00000542552 RIMBP3CA6NJZ7 1639 aa26.72■■□□□ 1.87
ECHDC2-223ENST00000542552 RIMBP3BA6NNM3 1639 aa26.72■■□□□ 1.87
ECHDC2-223ENST00000542552 RIMBP3Q9UFD9 1639 aa26.72■■□□□ 1.87
ECHDC2-223ENST00000542552 ADAMTS12P58397 1594 aa26.71■■□□□ 1.87
ECHDC2-223ENST00000542552 CLASP1Q7Z460 1538 aa26.7■■□□□ 1.87
ECHDC2-223ENST00000542552 ARHGEF11O15085 1522 aa26.7■■□□□ 1.86
ECHDC2-223ENST00000542552 FHAD1B1AJZ9 1412 aa26.66■■□□□ 1.86
ECHDC2-223ENST00000542552 GRIN2AQ12879 1464 aa26.65■■□□□ 1.86
ECHDC2-223ENST00000542552 KIF27Q86VH2 1401 aa26.6■■□□□ 1.85
ECHDC2-223ENST00000542552 TRIM41Q8WV44 630 aa26.58■■□□□ 1.85
ECHDC2-223ENST00000542552 IGF1RP08069 1367 aa26.56■■□□□ 1.84
ECHDC2-223ENST00000542552 NUP160Q12769 1436 aa26.56■■□□□ 1.84
ECHDC2-223ENST00000542552 CEP170Q5SW79 1584 aa26.53■■□□□ 1.84
ECHDC2-223ENST00000542552 ARAP1Q96P48 1450 aa26.48■■□□□ 1.83
ECHDC2-223ENST00000542552 CUL7Q14999 1698 aa26.47■■□□□ 1.83
ECHDC2-223ENST00000542552 CYB5RLQ6IPT4 315 aa26.42■■□□□ 1.82
ECHDC2-223ENST00000542552 SHROOM2Q13796 1616 aa26.39■■□□□ 1.81
ECHDC2-223ENST00000542552 CARMIL1Q5VZK9 1371 aa26.35■■□□□ 1.81
ECHDC2-223ENST00000542552 RUSC2Q8N2Y8 1516 aa26.34■■□□□ 1.81
ECHDC2-223ENST00000542552 ERCC6L2Q5T890 1561 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms