RNA–Protein interactions for RNA: ENST00000542462.1

PTPN6-217, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 4

Gene PTPN6, Length 570 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-217ENST00000542462 NISCHQ9Y2I1 1504 aa40.87■■■■■ 4.13
PTPN6-217ENST00000542462 CCDC180Q9P1Z9 1646 aa36.27■■■■□ 3.4
PTPN6-217ENST00000542462 ABCC9O60706 1549 aa36.08■■■■□ 3.37
PTPN6-217ENST00000542462 DCAF8L2P0C7V8 631 aa34.46■■■■□ 3.11
PTPN6-217ENST00000542462 RB1CC1Q8TDY2 1594 aa34.4■■■■□ 3.1
PTPN6-217ENST00000542462 NACADO15069 1562 aa34.3■■■■□ 3.08
PTPN6-217ENST00000542462 MYO15BQ96JP2 1530 aa33.98■■■■□ 3.03
PTPN6-217ENST00000542462 ZCCHC6Q5VYS8 1495 aaKnown RBP33.94■■■■□ 3.02
PTPN6-217ENST00000542462 PABPN1Q86U42 306 aaKnown RBP eCLIP33.8■■■■□ 3
PTPN6-217ENST00000542462 DCAF1Q9Y4B6 1507 aa33.71■■■□□ 2.99
PTPN6-217ENST00000542462 DNAJC5BQ9UF47 199 aa33.64■■■□□ 2.98
PTPN6-217ENST00000542462 UNC13AQ9UPW8 1703 aa33.55■■■□□ 2.96
PTPN6-217ENST00000542462 BICRAQ9NZM4 1560 aa33.47■■■□□ 2.95
PTPN6-217ENST00000542462 SCRIBQ14160 1630 aa33.23■■■□□ 2.91
PTPN6-217ENST00000542462 SHROOM4Q9ULL8 1493 aa32.93■■■□□ 2.86
PTPN6-217ENST00000542462 EIF4G1Q04637 1599 aaKnown RBP32.58■■■□□ 2.81
PTPN6-217ENST00000542462 CC2D2AQ9P2K1 1620 aa32.54■■■□□ 2.8
PTPN6-217ENST00000542462 CECR2Q9BXF3 1484 aa32.43■■■□□ 2.78
PTPN6-217ENST00000542462 NCAPD3P42695 1498 aa31.75■■■□□ 2.67
PTPN6-217ENST00000542462 ATAD2BQ9ULI0 1458 aa31.73■■■□□ 2.67
PTPN6-217ENST00000542462 SMARCA4P51532 1647 aa31.71■■■□□ 2.67
PTPN6-217ENST00000542462 BAZ1AQ9NRL2 1556 aaPredicted RBP31.62■■■□□ 2.65
PTPN6-217ENST00000542462 SMARCA2P51531 1590 aa31.56■■■□□ 2.64
PTPN6-217ENST00000542462 MROH2BQ7Z745 1585 aa31.53■■■□□ 2.64
PTPN6-217ENST00000542462 HMGXB3Q12766 1538 aa31.44■■■□□ 2.62
PTPN6-217ENST00000542462 PEG3Q9GZU2 1588 aa31.39■■■□□ 2.62
PTPN6-217ENST00000542462 BAZ1BQ9UIG0 1483 aaKnown RBP31.39■■■□□ 2.62
PTPN6-217ENST00000542462 NESP48681 1621 aa31.15■■■□□ 2.58
PTPN6-217ENST00000542462 WIZO95785 1651 aa31.11■■■□□ 2.57
PTPN6-217ENST00000542462 RSF1Q96T23 1441 aaPredicted RBP31.08■■■□□ 2.57
PTPN6-217ENST00000542462 ERCC6Q03468 1493 aa31.06■■■□□ 2.56
PTPN6-217ENST00000542462 LAMC3Q9Y6N6 1575 aa30.84■■■□□ 2.53
PTPN6-217ENST00000542462 CADPSQ9ULU8 1353 aa30.84■■■□□ 2.53
PTPN6-217ENST00000542462 CUX2O14529 1486 aa30.82■■■□□ 2.52
PTPN6-217ENST00000542462 PDS5BQ9NTI5 1447 aa30.74■■■□□ 2.51
PTPN6-217ENST00000542462 TOP2AP11388 1531 aaKnown RBP30.73■■■□□ 2.51
PTPN6-217ENST00000542462 THOC2Q8NI27 1593 aaKnown RBP30.6■■■□□ 2.49
PTPN6-217ENST00000542462 KIF21AQ7Z4S6 1674 aa30.58■■■□□ 2.49
PTPN6-217ENST00000542462 CFTRP13569 1480 aa30.55■■■□□ 2.48
PTPN6-217ENST00000542462 CCDC88BA6NC98 1476 aa30.49■■■□□ 2.47
PTPN6-217ENST00000542462 DNAJC5Q9H3Z4 198 aa30.46■■■□□ 2.47
PTPN6-217ENST00000542462 FANCD2Q9BXW9 1451 aa30.44■■■□□ 2.46
PTPN6-217ENST00000542462 MRC2Q9UBG0 1479 aa30.43■■■□□ 2.46
PTPN6-217ENST00000542462 CEP164Q9UPV0 1460 aa30.38■■■□□ 2.45
PTPN6-217ENST00000542462 WDR62O43379 1518 aa30.32■■■□□ 2.44
PTPN6-217ENST00000542462 URB2Q14146 1524 aaKnown RBP30.19■■■□□ 2.42
PTPN6-217ENST00000542462 SUPT5HO00267 1087 aaKnown RBP30.13■■■□□ 2.41
PTPN6-217ENST00000542462 PRDM2Q13029 1718 aa30■■■□□ 2.39
PTPN6-217ENST00000542462 TOPBP1Q92547 1522 aa29.91■■■□□ 2.38
PTPN6-217ENST00000542462 ABCC8Q09428 1581 aa29.81■■■□□ 2.36
PTPN6-217ENST00000542462 IFT140Q96RY7 1462 aa29.79■■■□□ 2.36
PTPN6-217ENST00000542462 ZNF608Q9ULD9 1512 aaPredicted RBP29.78■■■□□ 2.36
PTPN6-217ENST00000542462 DNMBPQ6XZF7 1577 aa29.77■■■□□ 2.36
PTPN6-217ENST00000542462 POLA1P09884 1462 aaPredicted RBP29.64■■■□□ 2.34
PTPN6-217ENST00000542462 OSCARQ8IYS5 282 aa29.63■■■□□ 2.33
PTPN6-217ENST00000542462 RAD54L2Q9Y4B4 1467 aa29.6■■■□□ 2.33
PTPN6-217ENST00000542462 AQRO60306 1485 aaKnown RBP eCLIP29.59■■■□□ 2.33
PTPN6-217ENST00000542462 CUX1P39880 1505 aa29.58■■■□□ 2.33
PTPN6-217ENST00000542462 TARBP1Q13395 1621 aaKnown RBP29.56■■■□□ 2.32
PTPN6-217ENST00000542462 SOGA1O94964 1423 aa29.56■■■□□ 2.32
PTPN6-217ENST00000542462 FGD5Q6ZNL6 1462 aa29.51■■■□□ 2.31
PTPN6-217ENST00000542462 TDRD9Q8NDG6 1382 aaKnown RBP29.5■■■□□ 2.31
PTPN6-217ENST00000542462 EIF4G3O43432 1585 aaKnown RBP29.48■■■□□ 2.31
PTPN6-217ENST00000542462 FBLN2P98095 1184 aa29.32■■■□□ 2.28
PTPN6-217ENST00000542462 TRIM41Q8WV44 630 aa29.32■■■□□ 2.28
PTPN6-217ENST00000542462 WRNQ14191 1432 aaPredicted RBP eCLIP29.26■■■□□ 2.27
PTPN6-217ENST00000542462 SNAPC4Q5SXM2 1469 aa29.22■■■□□ 2.27
PTPN6-217ENST00000542462 ABCA10Q8WWZ4 1543 aa29.2■■■□□ 2.26
PTPN6-217ENST00000542462 GRIN2BQ13224 1484 aa29.19■■■□□ 2.26
PTPN6-217ENST00000542462 WDR97A6NE52 1622 aa29.18■■■□□ 2.26
PTPN6-217ENST00000542462 SYNJ1O43426 1573 aa29.18■■■□□ 2.26
PTPN6-217ENST00000542462 GAPVD1Q14C86 1478 aa29.17■■■□□ 2.26
PTPN6-217ENST00000542462 CHMP7Q8WUX9 453 aaPredicted RBP29.16■■■□□ 2.26
PTPN6-217ENST00000542462 TOP2BQ02880 1626 aa29.15■■■□□ 2.26
PTPN6-217ENST00000542462 CHD1O14646 1710 aa29.14■■■□□ 2.25
PTPN6-217ENST00000542462 MAGI1Q96QZ7 1491 aaPredicted RBP29.11■■■□□ 2.25
PTPN6-217ENST00000542462 BIVM-ERCC5R4GMW8 1640 aa29.1■■■□□ 2.25
PTPN6-217ENST00000542462 RIMBP3CA6NJZ7 1639 aa29.05■■■□□ 2.24
PTPN6-217ENST00000542462 RIMBP3BA6NNM3 1639 aa29.05■■■□□ 2.24
PTPN6-217ENST00000542462 RIMBP3Q9UFD9 1639 aa29.05■■■□□ 2.24
PTPN6-217ENST00000542462 ABCA5Q8WWZ7 1642 aa29.05■■■□□ 2.24
PTPN6-217ENST00000542462 ARHGEF11O15085 1522 aa29.04■■■□□ 2.24
PTPN6-217ENST00000542462 SYNJ2O15056 1496 aa29.04■■■□□ 2.24
PTPN6-217ENST00000542462 PBRM1Q86U86 1689 aa28.96■■■□□ 2.23
PTPN6-217ENST00000542462 CYB5RLQ6IPT4 315 aa28.95■■■□□ 2.22
PTPN6-217ENST00000542462 CLASP1Q7Z460 1538 aa28.9■■■□□ 2.22
PTPN6-217ENST00000542462 ARAP1Q96P48 1450 aa28.83■■■□□ 2.21
PTPN6-217ENST00000542462 FHAD1B1AJZ9 1412 aa28.82■■■□□ 2.2
PTPN6-217ENST00000542462 GRIN2AQ12879 1464 aa28.81■■■□□ 2.2
PTPN6-217ENST00000542462 ADAMTS12P58397 1594 aa28.79■■■□□ 2.2
PTPN6-217ENST00000542462 ERICH3Q5RHP9 1530 aa28.79■■■□□ 2.2
PTPN6-217ENST00000542462 NUP160Q12769 1436 aa28.72■■■□□ 2.19
PTPN6-217ENST00000542462 IGF1RP08069 1367 aa28.71■■■□□ 2.19
PTPN6-217ENST00000542462 CEP170Q5SW79 1584 aa28.68■■■□□ 2.18
PTPN6-217ENST00000542462 KIF27Q86VH2 1401 aa28.66■■■□□ 2.18
PTPN6-217ENST00000542462 ERCC6L2Q5T890 1561 aa28.57■■■□□ 2.16
PTPN6-217ENST00000542462 JPH4Q96JJ6 628 aa28.54■■■□□ 2.16
PTPN6-217ENST00000542462 CARMIL1Q5VZK9 1371 aa28.48■■■□□ 2.15
PTPN6-217ENST00000542462 SHROOM2Q13796 1616 aa28.46■■■□□ 2.15
PTPN6-217ENST00000542462 PRG4Q92954 1404 aaPredicted RBP28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms