RNA–Protein interactions for RNA: ENST00000542452.1

C2CD3-217, Transcript of C2 calcium dependent domain containing 3, humanhuman

TSL 3

Gene C2CD3, Length 956 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C2CD3-217ENST00000542452 NISCHQ9Y2I1 1504 aa28.47■■■□□ 2.15
C2CD3-217ENST00000542452 CCDC180Q9P1Z9 1646 aa25.41■■□□□ 1.66
C2CD3-217ENST00000542452 ABCC9O60706 1549 aa24.89■■□□□ 1.57
C2CD3-217ENST00000542452 RB1CC1Q8TDY2 1594 aa23.88■■□□□ 1.41
C2CD3-217ENST00000542452 NACADO15069 1562 aa23.82■■□□□ 1.4
C2CD3-217ENST00000542452 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
C2CD3-217ENST00000542452 MYO15BQ96JP2 1530 aa23.66■■□□□ 1.38
C2CD3-217ENST00000542452 DCAF8L2P0C7V8 631 aa23.63■■□□□ 1.37
C2CD3-217ENST00000542452 DCAF1Q9Y4B6 1507 aa23.54■■□□□ 1.36
C2CD3-217ENST00000542452 UNC13AQ9UPW8 1703 aa23.5■■□□□ 1.35
C2CD3-217ENST00000542452 BICRAQ9NZM4 1560 aa23.27■■□□□ 1.32
C2CD3-217ENST00000542452 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
C2CD3-217ENST00000542452 PABPN1Q86U42 306 aaKnown RBP eCLIP23.17■■□□□ 1.3
C2CD3-217ENST00000542452 SHROOM4Q9ULL8 1493 aa22.91■■□□□ 1.26
C2CD3-217ENST00000542452 DNAJC5BQ9UF47 199 aa22.9■■□□□ 1.26
C2CD3-217ENST00000542452 EIF4G1Q04637 1599 aaKnown RBP22.61■■□□□ 1.21
C2CD3-217ENST00000542452 CC2D2AQ9P2K1 1620 aa22.54■■□□□ 1.2
C2CD3-217ENST00000542452 CECR2Q9BXF3 1484 aa22.34■■□□□ 1.17
C2CD3-217ENST00000542452 SMARCA4P51532 1647 aa22.16■■□□□ 1.14
C2CD3-217ENST00000542452 BAZ1AQ9NRL2 1556 aaPredicted RBP22.05■■□□□ 1.12
C2CD3-217ENST00000542452 ATAD2BQ9ULI0 1458 aa22.01■■□□□ 1.11
C2CD3-217ENST00000542452 MROH2BQ7Z745 1585 aa21.98■■□□□ 1.11
C2CD3-217ENST00000542452 NCAPD3P42695 1498 aa21.97■■□□□ 1.11
C2CD3-217ENST00000542452 SMARCA2P51531 1590 aa21.95■■□□□ 1.11
C2CD3-217ENST00000542452 PEG3Q9GZU2 1588 aa21.93■■□□□ 1.1
C2CD3-217ENST00000542452 HMGXB3Q12766 1538 aa21.91■■□□□ 1.1
C2CD3-217ENST00000542452 BAZ1BQ9UIG0 1483 aaKnown RBP21.8■■□□□ 1.08
C2CD3-217ENST00000542452 WIZO95785 1651 aa21.76■■□□□ 1.07
C2CD3-217ENST00000542452 RSF1Q96T23 1441 aaPredicted RBP21.64■■□□□ 1.06
C2CD3-217ENST00000542452 NESP48681 1621 aa21.55■■□□□ 1.04
C2CD3-217ENST00000542452 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
C2CD3-217ENST00000542452 LAMC3Q9Y6N6 1575 aa21.44■■□□□ 1.02
C2CD3-217ENST00000542452 ERCC6Q03468 1493 aa21.39■■□□□ 1.02
C2CD3-217ENST00000542452 KIF21AQ7Z4S6 1674 aa21.35■■□□□ 1.01
C2CD3-217ENST00000542452 THOC2Q8NI27 1593 aaKnown RBP21.31■■□□□ 1
C2CD3-217ENST00000542452 CADPSQ9ULU8 1353 aa21.3■■□□□ 1
C2CD3-217ENST00000542452 CUX2O14529 1486 aa21.23■□□□□ 0.99
C2CD3-217ENST00000542452 PDS5BQ9NTI5 1447 aa21.21■□□□□ 0.99
C2CD3-217ENST00000542452 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
C2CD3-217ENST00000542452 CFTRP13569 1480 aa21.2■□□□□ 0.98
C2CD3-217ENST00000542452 PRDM2Q13029 1718 aa21.16■□□□□ 0.98
C2CD3-217ENST00000542452 FANCD2Q9BXW9 1451 aa21.1■□□□□ 0.97
C2CD3-217ENST00000542452 MRC2Q9UBG0 1479 aa21.08■□□□□ 0.97
C2CD3-217ENST00000542452 CEP164Q9UPV0 1460 aa21.07■□□□□ 0.96
C2CD3-217ENST00000542452 WDR62O43379 1518 aa21.06■□□□□ 0.96
C2CD3-217ENST00000542452 URB2Q14146 1524 aaKnown RBP20.95■□□□□ 0.94
C2CD3-217ENST00000542452 SUPT5HO00267 1087 aaKnown RBP20.92■□□□□ 0.94
C2CD3-217ENST00000542452 TOPBP1Q92547 1522 aa20.78■□□□□ 0.92
C2CD3-217ENST00000542452 DNMBPQ6XZF7 1577 aa20.76■□□□□ 0.91
C2CD3-217ENST00000542452 ABCC8Q09428 1581 aa20.67■□□□□ 0.9
C2CD3-217ENST00000542452 IFT140Q96RY7 1462 aa20.63■□□□□ 0.89
C2CD3-217ENST00000542452 CUX1P39880 1505 aa20.63■□□□□ 0.89
C2CD3-217ENST00000542452 TARBP1Q13395 1621 aaKnown RBP20.61■□□□□ 0.89
C2CD3-217ENST00000542452 ZNF608Q9ULD9 1512 aaPredicted RBP20.61■□□□□ 0.89
C2CD3-217ENST00000542452 POLA1P09884 1462 aaPredicted RBP20.61■□□□□ 0.89
C2CD3-217ENST00000542452 DNAJC5Q9H3Z4 198 aa20.6■□□□□ 0.89
C2CD3-217ENST00000542452 EIF4G3O43432 1585 aaKnown RBP20.56■□□□□ 0.88
C2CD3-217ENST00000542452 FGD5Q6ZNL6 1462 aa20.54■□□□□ 0.88
C2CD3-217ENST00000542452 RAD54L2Q9Y4B4 1467 aa20.51■□□□□ 0.87
C2CD3-217ENST00000542452 WDR97A6NE52 1622 aa20.49■□□□□ 0.87
C2CD3-217ENST00000542452 SYNJ1O43426 1573 aa20.45■□□□□ 0.86
C2CD3-217ENST00000542452 BIVM-ERCC5R4GMW8 1640 aa20.45■□□□□ 0.86
C2CD3-217ENST00000542452 SOGA1O94964 1423 aa20.43■□□□□ 0.86
C2CD3-217ENST00000542452 AQRO60306 1485 aaKnown RBP eCLIP20.43■□□□□ 0.86
C2CD3-217ENST00000542452 TOP2BQ02880 1626 aa20.41■□□□□ 0.86
C2CD3-217ENST00000542452 WRNQ14191 1432 aaPredicted RBP eCLIP20.38■□□□□ 0.85
C2CD3-217ENST00000542452 TDRD9Q8NDG6 1382 aaKnown RBP20.34■□□□□ 0.85
C2CD3-217ENST00000542452 CHD1O14646 1710 aa20.34■□□□□ 0.85
C2CD3-217ENST00000542452 ABCA10Q8WWZ4 1543 aa20.32■□□□□ 0.84
C2CD3-217ENST00000542452 ABCA5Q8WWZ7 1642 aa20.32■□□□□ 0.84
C2CD3-217ENST00000542452 PBRM1Q86U86 1689 aa20.32■□□□□ 0.84
C2CD3-217ENST00000542452 SNAPC4Q5SXM2 1469 aa20.28■□□□□ 0.84
C2CD3-217ENST00000542452 GRIN2BQ13224 1484 aa20.24■□□□□ 0.83
C2CD3-217ENST00000542452 GAPVD1Q14C86 1478 aa20.23■□□□□ 0.83
C2CD3-217ENST00000542452 OSCARQ8IYS5 282 aa20.21■□□□□ 0.83
C2CD3-217ENST00000542452 MAGI1Q96QZ7 1491 aaPredicted RBP20.2■□□□□ 0.82
C2CD3-217ENST00000542452 ADAMTS12P58397 1594 aa20.13■□□□□ 0.81
C2CD3-217ENST00000542452 SYNJ2O15056 1496 aa20.12■□□□□ 0.81
C2CD3-217ENST00000542452 RIMBP3CA6NJZ7 1639 aa20.1■□□□□ 0.81
C2CD3-217ENST00000542452 RIMBP3BA6NNM3 1639 aa20.1■□□□□ 0.81
C2CD3-217ENST00000542452 RIMBP3Q9UFD9 1639 aa20.1■□□□□ 0.81
C2CD3-217ENST00000542452 CLASP1Q7Z460 1538 aa20.09■□□□□ 0.81
C2CD3-217ENST00000542452 FBLN2P98095 1184 aa20.07■□□□□ 0.8
C2CD3-217ENST00000542452 ERICH3Q5RHP9 1530 aa20.07■□□□□ 0.8
C2CD3-217ENST00000542452 ARHGEF11O15085 1522 aa20.05■□□□□ 0.8
C2CD3-217ENST00000542452 GRIN2AQ12879 1464 aa20.01■□□□□ 0.79
C2CD3-217ENST00000542452 CHMP7Q8WUX9 453 aaPredicted RBP20.01■□□□□ 0.79
C2CD3-217ENST00000542452 FHAD1B1AJZ9 1412 aa19.98■□□□□ 0.79
C2CD3-217ENST00000542452 CEP170Q5SW79 1584 aa19.98■□□□□ 0.79
C2CD3-217ENST00000542452 NUP160Q12769 1436 aa19.93■□□□□ 0.78
C2CD3-217ENST00000542452 KIF27Q86VH2 1401 aa19.92■□□□□ 0.78
C2CD3-217ENST00000542452 ARAP1Q96P48 1450 aa19.91■□□□□ 0.78
C2CD3-217ENST00000542452 CUL7Q14999 1698 aa19.9■□□□□ 0.78
C2CD3-217ENST00000542452 TRIM41Q8WV44 630 aa19.89■□□□□ 0.77
C2CD3-217ENST00000542452 IGF1RP08069 1367 aa19.86■□□□□ 0.77
C2CD3-217ENST00000542452 SHROOM2Q13796 1616 aa19.85■□□□□ 0.77
C2CD3-217ENST00000542452 RUSC2Q8N2Y8 1516 aa19.85■□□□□ 0.77
C2CD3-217ENST00000542452 ERCC6L2Q5T890 1561 aa19.84■□□□□ 0.77
C2CD3-217ENST00000542452 CARMIL1Q5VZK9 1371 aa19.73■□□□□ 0.75
C2CD3-217ENST00000542452 CYB5RLQ6IPT4 315 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms