RNA–Protein interactions for RNA: ENST00000542367.1

CCND1-205, Transcript of cyclin D1, humanhuman

TSL 1 (best)

Gene CCND1, Length 476 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCND1-205ENST00000542367 NISCHQ9Y2I1 1504 aa40.46■■■■■ 4.07
CCND1-205ENST00000542367 CCDC180Q9P1Z9 1646 aa36.08■■■■□ 3.37
CCND1-205ENST00000542367 ABCC9O60706 1549 aa35.79■■■■□ 3.32
CCND1-205ENST00000542367 RB1CC1Q8TDY2 1594 aa34.19■■■■□ 3.06
CCND1-205ENST00000542367 DCAF8L2P0C7V8 631 aa34.1■■■■□ 3.05
CCND1-205ENST00000542367 NACADO15069 1562 aa34.06■■■■□ 3.04
CCND1-205ENST00000542367 MYO15BQ96JP2 1530 aa33.69■■■□□ 2.98
CCND1-205ENST00000542367 ZCCHC6Q5VYS8 1495 aaKnown RBP33.59■■■□□ 2.97
CCND1-205ENST00000542367 PABPN1Q86U42 306 aaKnown RBP eCLIP33.43■■■□□ 2.94
CCND1-205ENST00000542367 DCAF1Q9Y4B6 1507 aa33.41■■■□□ 2.94
CCND1-205ENST00000542367 UNC13AQ9UPW8 1703 aa33.41■■■□□ 2.94
CCND1-205ENST00000542367 DNAJC5BQ9UF47 199 aa33.27■■■□□ 2.92
CCND1-205ENST00000542367 BICRAQ9NZM4 1560 aa33.18■■■□□ 2.9
CCND1-205ENST00000542367 SCRIBQ14160 1630 aa32.95■■■□□ 2.86
CCND1-205ENST00000542367 SHROOM4Q9ULL8 1493 aa32.74■■■□□ 2.83
CCND1-205ENST00000542367 EIF4G1Q04637 1599 aaKnown RBP32.34■■■□□ 2.77
CCND1-205ENST00000542367 CC2D2AQ9P2K1 1620 aa32.33■■■□□ 2.77
CCND1-205ENST00000542367 CECR2Q9BXF3 1484 aa32.18■■■□□ 2.74
CCND1-205ENST00000542367 NCAPD3P42695 1498 aa31.46■■■□□ 2.63
CCND1-205ENST00000542367 SMARCA4P51532 1647 aa31.46■■■□□ 2.63
CCND1-205ENST00000542367 ATAD2BQ9ULI0 1458 aa31.42■■■□□ 2.62
CCND1-205ENST00000542367 BAZ1AQ9NRL2 1556 aaPredicted RBP31.36■■■□□ 2.61
CCND1-205ENST00000542367 SMARCA2P51531 1590 aa31.33■■■□□ 2.61
CCND1-205ENST00000542367 HMGXB3Q12766 1538 aa31.22■■■□□ 2.59
CCND1-205ENST00000542367 MROH2BQ7Z745 1585 aa31.19■■■□□ 2.58
CCND1-205ENST00000542367 PEG3Q9GZU2 1588 aa31.13■■■□□ 2.57
CCND1-205ENST00000542367 BAZ1BQ9UIG0 1483 aaKnown RBP31.13■■■□□ 2.57
CCND1-205ENST00000542367 ERCC6Q03468 1493 aa30.86■■■□□ 2.53
CCND1-205ENST00000542367 NESP48681 1621 aa30.84■■■□□ 2.53
CCND1-205ENST00000542367 WIZO95785 1651 aa30.83■■■□□ 2.53
CCND1-205ENST00000542367 RSF1Q96T23 1441 aaPredicted RBP30.7■■■□□ 2.5
CCND1-205ENST00000542367 LAMC3Q9Y6N6 1575 aa30.66■■■□□ 2.5
CCND1-205ENST00000542367 CUX2O14529 1486 aa30.64■■■□□ 2.5
CCND1-205ENST00000542367 CADPSQ9ULU8 1353 aa30.54■■■□□ 2.48
CCND1-205ENST00000542367 PDS5BQ9NTI5 1447 aa30.51■■■□□ 2.47
CCND1-205ENST00000542367 TOP2AP11388 1531 aaKnown RBP30.44■■■□□ 2.46
CCND1-205ENST00000542367 KIF21AQ7Z4S6 1674 aa30.43■■■□□ 2.46
CCND1-205ENST00000542367 THOC2Q8NI27 1593 aaKnown RBP30.41■■■□□ 2.46
CCND1-205ENST00000542367 CFTRP13569 1480 aa30.25■■■□□ 2.43
CCND1-205ENST00000542367 DNAJC5Q9H3Z4 198 aa30.25■■■□□ 2.43
CCND1-205ENST00000542367 MRC2Q9UBG0 1479 aa30.19■■■□□ 2.42
CCND1-205ENST00000542367 FANCD2Q9BXW9 1451 aa30.18■■■□□ 2.42
CCND1-205ENST00000542367 CEP164Q9UPV0 1460 aa30.17■■■□□ 2.42
CCND1-205ENST00000542367 CCDC88BA6NC98 1476 aa30.14■■■□□ 2.42
CCND1-205ENST00000542367 WDR62O43379 1518 aa30.09■■■□□ 2.41
CCND1-205ENST00000542367 PRDM2Q13029 1718 aa29.93■■■□□ 2.38
CCND1-205ENST00000542367 URB2Q14146 1524 aaKnown RBP29.9■■■□□ 2.38
CCND1-205ENST00000542367 SUPT5HO00267 1087 aaKnown RBP29.7■■■□□ 2.35
CCND1-205ENST00000542367 TOPBP1Q92547 1522 aa29.64■■■□□ 2.34
CCND1-205ENST00000542367 ABCC8Q09428 1581 aa29.6■■■□□ 2.33
CCND1-205ENST00000542367 DNMBPQ6XZF7 1577 aa29.55■■■□□ 2.32
CCND1-205ENST00000542367 IFT140Q96RY7 1462 aa29.55■■■□□ 2.32
CCND1-205ENST00000542367 ZNF608Q9ULD9 1512 aaPredicted RBP29.48■■■□□ 2.31
CCND1-205ENST00000542367 OSCARQ8IYS5 282 aa29.38■■■□□ 2.29
CCND1-205ENST00000542367 POLA1P09884 1462 aaPredicted RBP29.36■■■□□ 2.29
CCND1-205ENST00000542367 TARBP1Q13395 1621 aaKnown RBP29.34■■■□□ 2.29
CCND1-205ENST00000542367 EIF4G3O43432 1585 aaKnown RBP29.3■■■□□ 2.28
CCND1-205ENST00000542367 AQRO60306 1485 aaKnown RBP eCLIP29.28■■■□□ 2.283e-7■■■□□ 19.2
CCND1-205ENST00000542367 RAD54L2Q9Y4B4 1467 aa29.28■■■□□ 2.28
CCND1-205ENST00000542367 SOGA1O94964 1423 aa29.28■■■□□ 2.28
CCND1-205ENST00000542367 CUX1P39880 1505 aa29.27■■■□□ 2.28
CCND1-205ENST00000542367 FGD5Q6ZNL6 1462 aa29.23■■■□□ 2.27
CCND1-205ENST00000542367 TDRD9Q8NDG6 1382 aaKnown RBP29.17■■■□□ 2.26
CCND1-205ENST00000542367 TRIM41Q8WV44 630 aa29.12■■■□□ 2.25
CCND1-205ENST00000542367 FBLN2P98095 1184 aa29.06■■■□□ 2.24
CCND1-205ENST00000542367 WDR97A6NE52 1622 aa29.03■■■□□ 2.24
CCND1-205ENST00000542367 CHD1O14646 1710 aa29■■■□□ 2.23
CCND1-205ENST00000542367 SNAPC4Q5SXM2 1469 aa28.96■■■□□ 2.23
CCND1-205ENST00000542367 WRNQ14191 1432 aaPredicted RBP eCLIP28.94■■■□□ 2.22
CCND1-205ENST00000542367 GRIN2BQ13224 1484 aa28.94■■■□□ 2.22
CCND1-205ENST00000542367 ABCA10Q8WWZ4 1543 aa28.92■■■□□ 2.22
CCND1-205ENST00000542367 GAPVD1Q14C86 1478 aa28.91■■■□□ 2.22
CCND1-205ENST00000542367 RIMBP3CA6NJZ7 1639 aa28.9■■■□□ 2.22
CCND1-205ENST00000542367 RIMBP3BA6NNM3 1639 aa28.9■■■□□ 2.22
CCND1-205ENST00000542367 RIMBP3Q9UFD9 1639 aa28.9■■■□□ 2.22
CCND1-205ENST00000542367 CHMP7Q8WUX9 453 aaPredicted RBP28.89■■■□□ 2.22
CCND1-205ENST00000542367 TOP2BQ02880 1626 aa28.89■■■□□ 2.22
CCND1-205ENST00000542367 MAGI1Q96QZ7 1491 aaPredicted RBP28.89■■■□□ 2.22
CCND1-205ENST00000542367 BIVM-ERCC5R4GMW8 1640 aa28.88■■■□□ 2.21
CCND1-205ENST00000542367 SYNJ1O43426 1573 aa28.88■■■□□ 2.21
CCND1-205ENST00000542367 ARHGEF11O15085 1522 aa28.85■■■□□ 2.21
CCND1-205ENST00000542367 PBRM1Q86U86 1689 aa28.83■■■□□ 2.21
CCND1-205ENST00000542367 ABCA5Q8WWZ7 1642 aa28.82■■■□□ 2.2
CCND1-205ENST00000542367 SYNJ2O15056 1496 aa28.79■■■□□ 2.2
CCND1-205ENST00000542367 CYB5RLQ6IPT4 315 aa28.7■■■□□ 2.18
CCND1-205ENST00000542367 CLASP1Q7Z460 1538 aa28.69■■■□□ 2.18
CCND1-205ENST00000542367 ARAP1Q96P48 1450 aa28.59■■■□□ 2.17
CCND1-205ENST00000542367 ADAMTS12P58397 1594 aa28.57■■■□□ 2.16
CCND1-205ENST00000542367 GRIN2AQ12879 1464 aa28.56■■■□□ 2.16
CCND1-205ENST00000542367 ERICH3Q5RHP9 1530 aa28.56■■■□□ 2.16
CCND1-205ENST00000542367 FHAD1B1AJZ9 1412 aa28.55■■■□□ 2.16
CCND1-205ENST00000542367 NUP160Q12769 1436 aa28.45■■■□□ 2.15
CCND1-205ENST00000542367 CEP170Q5SW79 1584 aa28.44■■■□□ 2.14
CCND1-205ENST00000542367 KIF27Q86VH2 1401 aa28.37■■■□□ 2.13
CCND1-205ENST00000542367 IGF1RP08069 1367 aa28.35■■■□□ 2.13
CCND1-205ENST00000542367 ERCC6L2Q5T890 1561 aa28.29■■■□□ 2.12
CCND1-205ENST00000542367 SHROOM2Q13796 1616 aa28.25■■■□□ 2.11
CCND1-205ENST00000542367 TRHP20396 242 aaPredicted RBP28.25■■■□□ 2.11
CCND1-205ENST00000542367 JPH4Q96JJ6 628 aa28.24■■■□□ 2.11
CCND1-205ENST00000542367 CUL7Q14999 1698 aa28.2■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms