RNA–Protein interactions for RNA: ENST00000542337.5

DDB1-220, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 3

Gene DDB1, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-220ENST00000542337 NISCHQ9Y2I1 1504 aa49.8■■■■■ 5.56
DDB1-220ENST00000542337 CCDC180Q9P1Z9 1646 aa44.46■■■■■ 4.71
DDB1-220ENST00000542337 ABCC9O60706 1549 aa44.19■■■■■ 4.67
DDB1-220ENST00000542337 RB1CC1Q8TDY2 1594 aa42.23■■■■■ 4.35
DDB1-220ENST00000542337 DCAF8L2P0C7V8 631 aa42.1■■■■■ 4.33
DDB1-220ENST00000542337 NACADO15069 1562 aa42.04■■■■■ 4.32
DDB1-220ENST00000542337 MYO15BQ96JP2 1530 aa41.57■■■■■ 4.25
DDB1-220ENST00000542337 ZCCHC6Q5VYS8 1495 aaKnown RBP41.31■■■■■ 4.2
DDB1-220ENST00000542337 PABPN1Q86U42 306 aaKnown RBP eCLIP41.28■■■■■ 4.2
DDB1-220ENST00000542337 DCAF1Q9Y4B6 1507 aa41.15■■■■■ 4.18
DDB1-220ENST00000542337 DNAJC5BQ9UF47 199 aa41.11■■■■■ 4.17
DDB1-220ENST00000542337 UNC13AQ9UPW8 1703 aa41.05■■■■■ 4.16
DDB1-220ENST00000542337 BICRAQ9NZM4 1560 aa40.86■■■■■ 4.13
DDB1-220ENST00000542337 SCRIBQ14160 1630 aa40.56■■■■■ 4.08
DDB1-220ENST00000542337 SHROOM4Q9ULL8 1493 aa40.49■■■■■ 4.07
DDB1-220ENST00000542337 EIF4G1Q04637 1599 aaKnown RBP39.9■■■■□ 3.98
DDB1-220ENST00000542337 CC2D2AQ9P2K1 1620 aa39.89■■■■□ 3.98
DDB1-220ENST00000542337 CECR2Q9BXF3 1484 aa39.8■■■■□ 3.96
DDB1-220ENST00000542337 NCAPD3P42695 1498 aa38.81■■■■□ 3.8
DDB1-220ENST00000542337 ATAD2BQ9ULI0 1458 aa38.73■■■■□ 3.79
DDB1-220ENST00000542337 SMARCA4P51532 1647 aa38.72■■■■□ 3.79
DDB1-220ENST00000542337 SMARCA2P51531 1590 aa38.66■■■■□ 3.78
DDB1-220ENST00000542337 BAZ1AQ9NRL2 1556 aaPredicted RBP38.65■■■■□ 3.78
DDB1-220ENST00000542337 HMGXB3Q12766 1538 aa38.51■■■■□ 3.76
DDB1-220ENST00000542337 BAZ1BQ9UIG0 1483 aaKnown RBP38.41■■■■□ 3.74
DDB1-220ENST00000542337 MROH2BQ7Z745 1585 aa38.34■■■■□ 3.73
DDB1-220ENST00000542337 PEG3Q9GZU2 1588 aa38.33■■■■□ 3.73
DDB1-220ENST00000542337 ERCC6Q03468 1493 aa38.22■■■■□ 3.71
DDB1-220ENST00000542337 NESP48681 1621 aa38.01■■■■□ 3.68
DDB1-220ENST00000542337 CUX2O14529 1486 aa37.96■■■■□ 3.67
DDB1-220ENST00000542337 WIZO95785 1651 aa37.86■■■■□ 3.65
DDB1-220ENST00000542337 LAMC3Q9Y6N6 1575 aa37.85■■■■□ 3.65
DDB1-220ENST00000542337 RSF1Q96T23 1441 aaPredicted RBP37.74■■■■□ 3.63
DDB1-220ENST00000542337 PDS5BQ9NTI5 1447 aa37.74■■■■□ 3.63
DDB1-220ENST00000542337 CADPSQ9ULU8 1353 aa37.7■■■■□ 3.63
DDB1-220ENST00000542337 DNAJC5Q9H3Z4 198 aa37.59■■■■□ 3.61
DDB1-220ENST00000542337 THOC2Q8NI27 1593 aaKnown RBP37.5■■■■□ 3.59
DDB1-220ENST00000542337 TOP2AP11388 1531 aaKnown RBP37.46■■■■□ 3.59
DDB1-220ENST00000542337 KIF21AQ7Z4S6 1674 aa37.46■■■■□ 3.59
DDB1-220ENST00000542337 MRC2Q9UBG0 1479 aa37.31■■■■□ 3.56
DDB1-220ENST00000542337 CFTRP13569 1480 aa37.29■■■■□ 3.56
DDB1-220ENST00000542337 CEP164Q9UPV0 1460 aa37.25■■■■□ 3.55
DDB1-220ENST00000542337 FANCD2Q9BXW9 1451 aa37.23■■■■□ 3.55
DDB1-220ENST00000542337 WDR62O43379 1518 aa37.14■■■■□ 3.54
DDB1-220ENST00000542337 CCDC88BA6NC98 1476 aa37.07■■■■□ 3.53
DDB1-220ENST00000542337 URB2Q14146 1524 aaKnown RBP36.84■■■■□ 3.49
DDB1-220ENST00000542337 PRDM2Q13029 1718 aa36.79■■■■□ 3.48
DDB1-220ENST00000542337 ABCC8Q09428 1581 aa36.58■■■■□ 3.45
DDB1-220ENST00000542337 TOPBP1Q92547 1522 aa36.54■■■■□ 3.44
DDB1-220ENST00000542337 IFT140Q96RY7 1462 aa36.5■■■■□ 3.43
DDB1-220ENST00000542337 SUPT5HO00267 1087 aaKnown RBP36.48■■■■□ 3.43
DDB1-220ENST00000542337 OSCARQ8IYS5 282 aa36.43■■■■□ 3.42
DDB1-220ENST00000542337 DNMBPQ6XZF7 1577 aa36.42■■■■□ 3.42
DDB1-220ENST00000542337 ZNF608Q9ULD9 1512 aaPredicted RBP36.34■■■■□ 3.41
DDB1-220ENST00000542337 POLA1P09884 1462 aaPredicted RBP36.18■■■■□ 3.38
DDB1-220ENST00000542337 TRIM41Q8WV44 630 aa36.14■■■■□ 3.38
DDB1-220ENST00000542337 SOGA1O94964 1423 aa36.11■■■■□ 3.37
DDB1-220ENST00000542337 TARBP1Q13395 1621 aaKnown RBP36.11■■■■□ 3.37
DDB1-220ENST00000542337 AQRO60306 1485 aaKnown RBP eCLIP36.11■■■■□ 3.377e-7■■■■□ 19.7
DDB1-220ENST00000542337 EIF4G3O43432 1585 aaKnown RBP36.1■■■■□ 3.37
DDB1-220ENST00000542337 RAD54L2Q9Y4B4 1467 aa36.05■■■■□ 3.36
DDB1-220ENST00000542337 FGD5Q6ZNL6 1462 aa36.02■■■■□ 3.36
DDB1-220ENST00000542337 CUX1P39880 1505 aa36.01■■■■□ 3.36
DDB1-220ENST00000542337 TDRD9Q8NDG6 1382 aaKnown RBP35.98■■■■□ 3.35
DDB1-220ENST00000542337 FBLN2P98095 1184 aa35.94■■■■□ 3.34
DDB1-220ENST00000542337 WDR97A6NE52 1622 aa35.84■■■■□ 3.33
DDB1-220ENST00000542337 CHMP7Q8WUX9 453 aaPredicted RBP35.74■■■■□ 3.31
DDB1-220ENST00000542337 GRIN2BQ13224 1484 aa35.73■■■■□ 3.31
DDB1-220ENST00000542337 SNAPC4Q5SXM2 1469 aa35.73■■■■□ 3.31
DDB1-220ENST00000542337 CHD1O14646 1710 aa35.73■■■■□ 3.31
DDB1-220ENST00000542337 RIMBP3CA6NJZ7 1639 aa35.69■■■■□ 3.3
DDB1-220ENST00000542337 RIMBP3BA6NNM3 1639 aa35.69■■■■□ 3.3
DDB1-220ENST00000542337 RIMBP3Q9UFD9 1639 aa35.69■■■■□ 3.3
DDB1-220ENST00000542337 MAGI1Q96QZ7 1491 aaPredicted RBP35.68■■■■□ 3.3
DDB1-220ENST00000542337 ARHGEF11O15085 1522 aa35.67■■■■□ 3.3
DDB1-220ENST00000542337 GAPVD1Q14C86 1478 aa35.65■■■■□ 3.3
DDB1-220ENST00000542337 WRNQ14191 1432 aaPredicted RBP eCLIP35.65■■■■□ 3.3
DDB1-220ENST00000542337 ABCA10Q8WWZ4 1543 aa35.64■■■■□ 3.3
DDB1-220ENST00000542337 SYNJ2O15056 1496 aa35.55■■■■□ 3.28
DDB1-220ENST00000542337 CYB5RLQ6IPT4 315 aa35.53■■■■□ 3.28
DDB1-220ENST00000542337 TOP2BQ02880 1626 aa35.53■■■■□ 3.28
DDB1-220ENST00000542337 BIVM-ERCC5R4GMW8 1640 aa35.49■■■■□ 3.27
DDB1-220ENST00000542337 SYNJ1O43426 1573 aa35.48■■■■□ 3.27
DDB1-220ENST00000542337 ABCA5Q8WWZ7 1642 aa35.46■■■■□ 3.27
DDB1-220ENST00000542337 PBRM1Q86U86 1689 aa35.46■■■■□ 3.27
DDB1-220ENST00000542337 CLASP1Q7Z460 1538 aa35.38■■■■□ 3.25
DDB1-220ENST00000542337 ARAP1Q96P48 1450 aa35.33■■■■□ 3.25
DDB1-220ENST00000542337 FHAD1B1AJZ9 1412 aa35.23■■■■□ 3.23
DDB1-220ENST00000542337 GRIN2AQ12879 1464 aa35.23■■■■□ 3.23
DDB1-220ENST00000542337 ERICH3Q5RHP9 1530 aa35.21■■■■□ 3.23
DDB1-220ENST00000542337 ADAMTS12P58397 1594 aa35.2■■■■□ 3.23
DDB1-220ENST00000542337 NUP160Q12769 1436 aa35.09■■■■□ 3.21
DDB1-220ENST00000542337 TRHP20396 242 aaPredicted RBP35.07■■■■□ 3.2
DDB1-220ENST00000542337 CEP170Q5SW79 1584 aa35.01■■■■□ 3.2
DDB1-220ENST00000542337 KIF27Q86VH2 1401 aa34.98■■■■□ 3.19
DDB1-220ENST00000542337 IGF1RP08069 1367 aa34.89■■■■□ 3.18
DDB1-220ENST00000542337 JPH4Q96JJ6 628 aa34.87■■■■□ 3.17
DDB1-220ENST00000542337 ERCC6L2Q5T890 1561 aa34.83■■■■□ 3.17
DDB1-220ENST00000542337 SHROOM2Q13796 1616 aa34.81■■■■□ 3.16
DDB1-220ENST00000542337 PRG4Q92954 1404 aaPredicted RBP34.79■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms