RNA–Protein interactions for RNA: ENST00000542244.5

DDX11-220, Transcript of DEAD/H-box helicase 11, humanhuman

TSL 1 (best)

Gene DDX11, Length 1,193 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX11-220ENST00000542244 NISCHQ9Y2I1 1504 aa49.85■■■■■ 5.57
DDX11-220ENST00000542244 ABCC9O60706 1549 aa44.65■■■■■ 4.74
DDX11-220ENST00000542244 CCDC180Q9P1Z9 1646 aa44.55■■■■■ 4.72
DDX11-220ENST00000542244 RB1CC1Q8TDY2 1594 aa42.37■■■■■ 4.37
DDX11-220ENST00000542244 NACADO15069 1562 aa42.11■■■■■ 4.33
DDX11-220ENST00000542244 DCAF8L2P0C7V8 631 aa42.11■■■■■ 4.33
DDX11-220ENST00000542244 DNAJC5BQ9UF47 199 aa41.93■■■■■ 4.3
DDX11-220ENST00000542244 PABPN1Q86U42 306 aaKnown RBP eCLIP41.66■■■■■ 4.26
DDX11-220ENST00000542244 MYO15BQ96JP2 1530 aa41.53■■■■■ 4.24
DDX11-220ENST00000542244 UNC13AQ9UPW8 1703 aa41.52■■■■■ 4.24
DDX11-220ENST00000542244 ZCCHC6Q5VYS8 1495 aaKnown RBP41.34■■■■■ 4.21
DDX11-220ENST00000542244 BICRAQ9NZM4 1560 aa41.31■■■■■ 4.2
DDX11-220ENST00000542244 DCAF1Q9Y4B6 1507 aa41.08■■■■■ 4.17
DDX11-220ENST00000542244 SCRIBQ14160 1630 aa40.78■■■■■ 4.12
DDX11-220ENST00000542244 SHROOM4Q9ULL8 1493 aa40.48■■■■■ 4.07
DDX11-220ENST00000542244 CC2D2AQ9P2K1 1620 aa40.28■■■■■ 4.04
DDX11-220ENST00000542244 EIF4G1Q04637 1599 aaKnown RBP40.2■■■■■ 4.03
DDX11-220ENST00000542244 CECR2Q9BXF3 1484 aa40.13■■■■■ 4.02
DDX11-220ENST00000542244 NCAPD3P42695 1498 aa38.94■■■■□ 3.82
DDX11-220ENST00000542244 ATAD2BQ9ULI0 1458 aa38.89■■■■□ 3.82
DDX11-220ENST00000542244 SMARCA4P51532 1647 aa38.85■■■■□ 3.81
DDX11-220ENST00000542244 SMARCA2P51531 1590 aa38.66■■■■□ 3.78
DDX11-220ENST00000542244 BAZ1AQ9NRL2 1556 aaPredicted RBP38.61■■■■□ 3.77
DDX11-220ENST00000542244 HMGXB3Q12766 1538 aa38.61■■■■□ 3.77
DDX11-220ENST00000542244 MROH2BQ7Z745 1585 aa38.51■■■■□ 3.76
DDX11-220ENST00000542244 BAZ1BQ9UIG0 1483 aaKnown RBP38.47■■■■□ 3.75
DDX11-220ENST00000542244 NESP48681 1621 aa38.45■■■■□ 3.75
DDX11-220ENST00000542244 PEG3Q9GZU2 1588 aa38.42■■■■□ 3.74
DDX11-220ENST00000542244 ERCC6Q03468 1493 aa38.41■■■■□ 3.74
DDX11-220ENST00000542244 CUX2O14529 1486 aa38.26■■■■□ 3.72
DDX11-220ENST00000542244 DNAJC5Q9H3Z4 198 aa38.22■■■■□ 3.71
DDX11-220ENST00000542244 WIZO95785 1651 aa38.04■■■■□ 3.68
DDX11-220ENST00000542244 LAMC3Q9Y6N6 1575 aa37.97■■■■□ 3.67
DDX11-220ENST00000542244 THOC2Q8NI27 1593 aaKnown RBP37.92■■■■□ 3.66
DDX11-220ENST00000542244 KIF21AQ7Z4S6 1674 aa37.85■■■■□ 3.65
DDX11-220ENST00000542244 CADPSQ9ULU8 1353 aa37.78■■■■□ 3.64
DDX11-220ENST00000542244 PDS5BQ9NTI5 1447 aa37.75■■■■□ 3.63
DDX11-220ENST00000542244 RSF1Q96T23 1441 aaPredicted RBP37.73■■■■□ 3.63
DDX11-220ENST00000542244 MRC2Q9UBG0 1479 aa37.48■■■■□ 3.59
DDX11-220ENST00000542244 TOP2AP11388 1531 aaKnown RBP37.47■■■■□ 3.59
DDX11-220ENST00000542244 WDR62O43379 1518 aa37.39■■■■□ 3.58
DDX11-220ENST00000542244 CFTRP13569 1480 aa37.38■■■■□ 3.57
DDX11-220ENST00000542244 FANCD2Q9BXW9 1451 aa37.37■■■■□ 3.57
DDX11-220ENST00000542244 CEP164Q9UPV0 1460 aa37.34■■■■□ 3.57
DDX11-220ENST00000542244 CCDC88BA6NC98 1476 aa37.13■■■■□ 3.53
DDX11-220ENST00000542244 URB2Q14146 1524 aaKnown RBP37.12■■■■□ 3.53
DDX11-220ENST00000542244 PRDM2Q13029 1718 aa36.89■■■■□ 3.5
DDX11-220ENST00000542244 TOPBP1Q92547 1522 aa36.69■■■■□ 3.46
DDX11-220ENST00000542244 ZNF608Q9ULD9 1512 aaPredicted RBP36.68■■■■□ 3.46
DDX11-220ENST00000542244 TRIM41Q8WV44 630 aa36.65■■■■□ 3.46
DDX11-220ENST00000542244 IFT140Q96RY7 1462 aa36.58■■■■□ 3.45
DDX11-220ENST00000542244 OSCARQ8IYS5 282 aa36.58■■■■□ 3.45
DDX11-220ENST00000542244 DNMBPQ6XZF7 1577 aa36.5■■■■□ 3.43
DDX11-220ENST00000542244 ABCC8Q09428 1581 aa36.44■■■■□ 3.42
DDX11-220ENST00000542244 EIF4G3O43432 1585 aaKnown RBP36.37■■■■□ 3.41
DDX11-220ENST00000542244 TARBP1Q13395 1621 aaKnown RBP36.36■■■■□ 3.41
DDX11-220ENST00000542244 AQRO60306 1485 aaKnown RBP eCLIP36.34■■■■□ 3.412e-8■■■■■ 34.1
DDX11-220ENST00000542244 POLA1P09884 1462 aaPredicted RBP36.33■■■■□ 3.41
DDX11-220ENST00000542244 RAD54L2Q9Y4B4 1467 aa36.28■■■■□ 3.4
DDX11-220ENST00000542244 SUPT5HO00267 1087 aaKnown RBP36.21■■■■□ 3.39
DDX11-220ENST00000542244 RIMBP3CA6NJZ7 1639 aa36.16■■■■□ 3.38
DDX11-220ENST00000542244 RIMBP3BA6NNM3 1639 aa36.16■■■■□ 3.38
DDX11-220ENST00000542244 RIMBP3Q9UFD9 1639 aa36.16■■■■□ 3.38
DDX11-220ENST00000542244 CUX1P39880 1505 aa36.15■■■■□ 3.38
DDX11-220ENST00000542244 SOGA1O94964 1423 aa36.15■■■■□ 3.38
DDX11-220ENST00000542244 TDRD9Q8NDG6 1382 aaKnown RBP36.14■■■■□ 3.38
DDX11-220ENST00000542244 FGD5Q6ZNL6 1462 aa36.12■■■■□ 3.37
DDX11-220ENST00000542244 CHD1O14646 1710 aa36.08■■■■□ 3.37
DDX11-220ENST00000542244 ARHGEF11O15085 1522 aa36.05■■■■□ 3.36
DDX11-220ENST00000542244 FBLN2P98095 1184 aa36.02■■■■□ 3.36
DDX11-220ENST00000542244 SNAPC4Q5SXM2 1469 aa35.92■■■■□ 3.34
DDX11-220ENST00000542244 WDR97A6NE52 1622 aa35.83■■■■□ 3.33
DDX11-220ENST00000542244 CYB5RLQ6IPT4 315 aa35.81■■■■□ 3.32
DDX11-220ENST00000542244 GRIN2BQ13224 1484 aa35.77■■■■□ 3.32
DDX11-220ENST00000542244 ARAP1Q96P48 1450 aa35.75■■■■□ 3.31
DDX11-220ENST00000542244 CHMP7Q8WUX9 453 aaPredicted RBP35.72■■■■□ 3.31
DDX11-220ENST00000542244 MAGI1Q96QZ7 1491 aaPredicted RBP35.72■■■■□ 3.31
DDX11-220ENST00000542244 CLASP1Q7Z460 1538 aa35.69■■■■□ 3.3
DDX11-220ENST00000542244 GAPVD1Q14C86 1478 aa35.69■■■■□ 3.3
DDX11-220ENST00000542244 ABCA10Q8WWZ4 1543 aa35.67■■■■□ 3.3
DDX11-220ENST00000542244 PBRM1Q86U86 1689 aa35.65■■■■□ 3.3
DDX11-220ENST00000542244 SYNJ2O15056 1496 aa35.64■■■■□ 3.3
DDX11-220ENST00000542244 ABCA5Q8WWZ7 1642 aa35.62■■■■□ 3.29
DDX11-220ENST00000542244 SYNJ1O43426 1573 aa35.57■■■■□ 3.28
DDX11-220ENST00000542244 WRNQ14191 1432 aaPredicted RBP eCLIP35.52■■■■□ 3.28
DDX11-220ENST00000542244 TOP2BQ02880 1626 aa35.51■■■■□ 3.28
DDX11-220ENST00000542244 BIVM-ERCC5R4GMW8 1640 aa35.51■■■■□ 3.28
DDX11-220ENST00000542244 ADAMTS12P58397 1594 aa35.34■■■■□ 3.25
DDX11-220ENST00000542244 GRIN2AQ12879 1464 aa35.34■■■■□ 3.25
DDX11-220ENST00000542244 TRHP20396 242 aaPredicted RBP35.32■■■■□ 3.24
DDX11-220ENST00000542244 ERCC6L2Q5T890 1561 aa35.28■■■■□ 3.24
DDX11-220ENST00000542244 CEP170Q5SW79 1584 aa35.27■■■■□ 3.24
DDX11-220ENST00000542244 NUP160Q12769 1436 aa35.23■■■■□ 3.23
DDX11-220ENST00000542244 FHAD1B1AJZ9 1412 aa35.22■■■■□ 3.23
DDX11-220ENST00000542244 ERICH3Q5RHP9 1530 aa35.17■■■■□ 3.22
DDX11-220ENST00000542244 SHROOM2Q13796 1616 aa35.04■■■■□ 3.2
DDX11-220ENST00000542244 PRG4Q92954 1404 aaPredicted RBP34.9■■■■□ 3.18
DDX11-220ENST00000542244 IGF1RP08069 1367 aa34.88■■■■□ 3.17
DDX11-220ENST00000542244 JPH4Q96JJ6 628 aa34.88■■■■□ 3.17
DDX11-220ENST00000542244 RUSC2Q8N2Y8 1516 aa34.85■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms