RNA–Protein interactions for RNA: ENST00000542029.1

VTN-203, Transcript of vitronectin, humanhuman

TSL 3

Gene VTN, Length 501 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTN-203ENST00000542029 NISCHQ9Y2I1 1504 aa28.11■■■□□ 2.09
VTN-203ENST00000542029 CCDC180Q9P1Z9 1646 aa25.06■■□□□ 1.6
VTN-203ENST00000542029 ABCC9O60706 1549 aa24.99■■□□□ 1.59
VTN-203ENST00000542029 RB1CC1Q8TDY2 1594 aa23.86■■□□□ 1.41
VTN-203ENST00000542029 NACADO15069 1562 aa23.78■■□□□ 1.4
VTN-203ENST00000542029 DCAF8L2P0C7V8 631 aa23.75■■□□□ 1.39
VTN-203ENST00000542029 MYO15BQ96JP2 1530 aa23.55■■□□□ 1.36
VTN-203ENST00000542029 PABPN1Q86U42 306 aaKnown RBP eCLIP23.34■■□□□ 1.33
VTN-203ENST00000542029 ZCCHC6Q5VYS8 1495 aaKnown RBP23.32■■□□□ 1.32
VTN-203ENST00000542029 DNAJC5BQ9UF47 199 aa23.32■■□□□ 1.32
VTN-203ENST00000542029 DCAF1Q9Y4B6 1507 aa23.28■■□□□ 1.32
VTN-203ENST00000542029 BICRAQ9NZM4 1560 aa23.07■■□□□ 1.28
VTN-203ENST00000542029 UNC13AQ9UPW8 1703 aa23.05■■□□□ 1.28
VTN-203ENST00000542029 SHROOM4Q9ULL8 1493 aa22.97■■□□□ 1.27
VTN-203ENST00000542029 SCRIBQ14160 1630 aa22.82■■□□□ 1.24
VTN-203ENST00000542029 EIF4G1Q04637 1599 aaKnown RBP22.55■■□□□ 1.2
VTN-203ENST00000542029 CECR2Q9BXF3 1484 aa22.54■■□□□ 1.2
VTN-203ENST00000542029 CC2D2AQ9P2K1 1620 aa22.53■■□□□ 1.2
VTN-203ENST00000542029 NCAPD3P42695 1498 aa21.99■■□□□ 1.11
VTN-203ENST00000542029 ATAD2BQ9ULI0 1458 aa21.91■■□□□ 1.1
VTN-203ENST00000542029 SMARCA2P51531 1590 aa21.86■■□□□ 1.09
VTN-203ENST00000542029 SMARCA4P51532 1647 aa21.82■■□□□ 1.08
VTN-203ENST00000542029 BAZ1AQ9NRL2 1556 aaPredicted RBP21.82■■□□□ 1.08
VTN-203ENST00000542029 HMGXB3Q12766 1538 aa21.78■■□□□ 1.08
VTN-203ENST00000542029 BAZ1BQ9UIG0 1483 aaKnown RBP21.7■■□□□ 1.06
VTN-203ENST00000542029 PEG3Q9GZU2 1588 aa21.66■■□□□ 1.06
VTN-203ENST00000542029 ERCC6Q03468 1493 aa21.63■■□□□ 1.05
VTN-203ENST00000542029 MROH2BQ7Z745 1585 aa21.61■■□□□ 1.05
VTN-203ENST00000542029 CUX2O14529 1486 aa21.55■■□□□ 1.04
VTN-203ENST00000542029 NESP48681 1621 aa21.47■■□□□ 1.03
VTN-203ENST00000542029 DNAJC5Q9H3Z4 198 aa21.4■■□□□ 1.02
VTN-203ENST00000542029 LAMC3Q9Y6N6 1575 aa21.4■■□□□ 1.02
VTN-203ENST00000542029 PDS5BQ9NTI5 1447 aa21.38■■□□□ 1.01
VTN-203ENST00000542029 CADPSQ9ULU8 1353 aa21.36■■□□□ 1.01
VTN-203ENST00000542029 RSF1Q96T23 1441 aaPredicted RBP21.3■■□□□ 1
VTN-203ENST00000542029 WIZO95785 1651 aa21.28■■□□□ 1
VTN-203ENST00000542029 THOC2Q8NI27 1593 aaKnown RBP21.18■□□□□ 0.98
VTN-203ENST00000542029 TOP2AP11388 1531 aaKnown RBP21.13■□□□□ 0.97
VTN-203ENST00000542029 MRC2Q9UBG0 1479 aa21.11■□□□□ 0.97
VTN-203ENST00000542029 CFTRP13569 1480 aa21.1■□□□□ 0.97
VTN-203ENST00000542029 KIF21AQ7Z4S6 1674 aa21.07■□□□□ 0.96
VTN-203ENST00000542029 CEP164Q9UPV0 1460 aa21.06■□□□□ 0.96
VTN-203ENST00000542029 FANCD2Q9BXW9 1451 aa21.05■□□□□ 0.96
VTN-203ENST00000542029 WDR62O43379 1518 aa21.01■□□□□ 0.95
VTN-203ENST00000542029 CCDC88BA6NC98 1476 aa20.91■□□□□ 0.94
VTN-203ENST00000542029 URB2Q14146 1524 aaKnown RBP20.81■□□□□ 0.92
VTN-203ENST00000542029 ABCC8Q09428 1581 aa20.7■□□□□ 0.9
VTN-203ENST00000542029 OSCARQ8IYS5 282 aa20.67■□□□□ 0.9
VTN-203ENST00000542029 IFT140Q96RY7 1462 aa20.67■□□□□ 0.9
VTN-203ENST00000542029 PRDM2Q13029 1718 aa20.64■□□□□ 0.9
VTN-203ENST00000542029 TOPBP1Q92547 1522 aa20.64■□□□□ 0.9
VTN-203ENST00000542029 DNMBPQ6XZF7 1577 aa20.55■□□□□ 0.88
VTN-203ENST00000542029 ZNF608Q9ULD9 1512 aaPredicted RBP20.53■□□□□ 0.88
VTN-203ENST00000542029 SUPT5HO00267 1087 aaKnown RBP20.5■□□□□ 0.87
VTN-203ENST00000542029 TRIM41Q8WV44 630 aa20.48■□□□□ 0.87
VTN-203ENST00000542029 POLA1P09884 1462 aaPredicted RBP20.44■□□□□ 0.86
VTN-203ENST00000542029 SOGA1O94964 1423 aa20.41■□□□□ 0.86
VTN-203ENST00000542029 AQRO60306 1485 aaKnown RBP eCLIP20.4■□□□□ 0.86
VTN-203ENST00000542029 TARBP1Q13395 1621 aaKnown RBP20.37■□□□□ 0.85
VTN-203ENST00000542029 EIF4G3O43432 1585 aaKnown RBP20.36■□□□□ 0.85
VTN-203ENST00000542029 RAD54L2Q9Y4B4 1467 aa20.35■□□□□ 0.85
VTN-203ENST00000542029 TDRD9Q8NDG6 1382 aaKnown RBP20.34■□□□□ 0.85
VTN-203ENST00000542029 FGD5Q6ZNL6 1462 aa20.32■□□□□ 0.84
VTN-203ENST00000542029 FBLN2P98095 1184 aa20.31■□□□□ 0.84
VTN-203ENST00000542029 CUX1P39880 1505 aa20.3■□□□□ 0.84
VTN-203ENST00000542029 WDR97A6NE52 1622 aa20.26■□□□□ 0.83
VTN-203ENST00000542029 CHMP7Q8WUX9 453 aaPredicted RBP20.22■□□□□ 0.83
VTN-203ENST00000542029 GRIN2BQ13224 1484 aa20.21■□□□□ 0.83
VTN-203ENST00000542029 MAGI1Q96QZ7 1491 aaPredicted RBP20.19■□□□□ 0.82
VTN-203ENST00000542029 ARHGEF11O15085 1522 aa20.19■□□□□ 0.82
VTN-203ENST00000542029 SNAPC4Q5SXM2 1469 aa20.18■□□□□ 0.82
VTN-203ENST00000542029 RIMBP3CA6NJZ7 1639 aa20.16■□□□□ 0.82
VTN-203ENST00000542029 RIMBP3BA6NNM3 1639 aa20.16■□□□□ 0.82
VTN-203ENST00000542029 RIMBP3Q9UFD9 1639 aa20.16■□□□□ 0.82
VTN-203ENST00000542029 WRNQ14191 1432 aaPredicted RBP eCLIP20.15■□□□□ 0.82
VTN-203ENST00000542029 ABCA10Q8WWZ4 1543 aa20.15■□□□□ 0.82
VTN-203ENST00000542029 GAPVD1Q14C86 1478 aa20.14■□□□□ 0.81
VTN-203ENST00000542029 CYB5RLQ6IPT4 315 aa20.13■□□□□ 0.81
VTN-203ENST00000542029 SYNJ2O15056 1496 aa20.11■□□□□ 0.81
VTN-203ENST00000542029 CHD1O14646 1710 aa20.09■□□□□ 0.81
VTN-203ENST00000542029 SYNJ1O43426 1573 aa20.04■□□□□ 0.8
VTN-203ENST00000542029 TOP2BQ02880 1626 aa20.02■□□□□ 0.79
VTN-203ENST00000542029 ARAP1Q96P48 1450 aa20■□□□□ 0.79
VTN-203ENST00000542029 CLASP1Q7Z460 1538 aa20■□□□□ 0.79
VTN-203ENST00000542029 ABCA5Q8WWZ7 1642 aa19.99■□□□□ 0.79
VTN-203ENST00000542029 BIVM-ERCC5R4GMW8 1640 aa19.96■□□□□ 0.79
VTN-203ENST00000542029 FHAD1B1AJZ9 1412 aa19.93■□□□□ 0.78
VTN-203ENST00000542029 PBRM1Q86U86 1689 aa19.91■□□□□ 0.78
VTN-203ENST00000542029 GRIN2AQ12879 1464 aa19.91■□□□□ 0.78
VTN-203ENST00000542029 ERICH3Q5RHP9 1530 aa19.88■□□□□ 0.77
VTN-203ENST00000542029 NUP160Q12769 1436 aa19.87■□□□□ 0.77
VTN-203ENST00000542029 TRHP20396 242 aaPredicted RBP19.86■□□□□ 0.77
VTN-203ENST00000542029 ADAMTS12P58397 1594 aa19.85■□□□□ 0.77
VTN-203ENST00000542029 KIF27Q86VH2 1401 aa19.76■□□□□ 0.75
VTN-203ENST00000542029 CEP170Q5SW79 1584 aa19.74■□□□□ 0.75
VTN-203ENST00000542029 JPH4Q96JJ6 628 aa19.74■□□□□ 0.75
VTN-203ENST00000542029 IGF1RP08069 1367 aa19.72■□□□□ 0.75
VTN-203ENST00000542029 PRG4Q92954 1404 aaPredicted RBP19.67■□□□□ 0.74
VTN-203ENST00000542029 SHROOM2Q13796 1616 aa19.65■□□□□ 0.74
VTN-203ENST00000542029 ERCC6L2Q5T890 1561 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms