RNA–Protein interactions for RNA: ENST00000541922.1

C2CD3-216, Transcript of C2 calcium dependent domain containing 3, humanhuman

TSL 5

Gene C2CD3, Length 767 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C2CD3-216ENST00000541922 NISCHQ9Y2I1 1504 aa54.29■■■■■ 6.28
C2CD3-216ENST00000541922 CCDC180Q9P1Z9 1646 aa48.48■■■■■ 5.35
C2CD3-216ENST00000541922 ABCC9O60706 1549 aa47.87■■■■■ 5.25
C2CD3-216ENST00000541922 RB1CC1Q8TDY2 1594 aa45.86■■■■■ 4.93
C2CD3-216ENST00000541922 NACADO15069 1562 aa45.69■■■■■ 4.9
C2CD3-216ENST00000541922 DCAF8L2P0C7V8 631 aa45.62■■■■■ 4.89
C2CD3-216ENST00000541922 MYO15BQ96JP2 1530 aa45.24■■■■■ 4.83
C2CD3-216ENST00000541922 ZCCHC6Q5VYS8 1495 aaKnown RBP45.12■■■■■ 4.81
C2CD3-216ENST00000541922 DCAF1Q9Y4B6 1507 aa44.89■■■■■ 4.78
C2CD3-216ENST00000541922 UNC13AQ9UPW8 1703 aa44.83■■■■■ 4.77
C2CD3-216ENST00000541922 PABPN1Q86U42 306 aaKnown RBP eCLIP44.66■■■■■ 4.74
C2CD3-216ENST00000541922 BICRAQ9NZM4 1560 aa44.46■■■■■ 4.71
C2CD3-216ENST00000541922 DNAJC5BQ9UF47 199 aa44.32■■■■■ 4.69
C2CD3-216ENST00000541922 SCRIBQ14160 1630 aa44.21■■■■■ 4.67
C2CD3-216ENST00000541922 SHROOM4Q9ULL8 1493 aa43.94■■■■■ 4.62
C2CD3-216ENST00000541922 EIF4G1Q04637 1599 aaKnown RBP43.33■■■■■ 4.53
C2CD3-216ENST00000541922 CC2D2AQ9P2K1 1620 aa43.28■■■■■ 4.52
C2CD3-216ENST00000541922 CECR2Q9BXF3 1484 aa43.06■■■■■ 4.48
C2CD3-216ENST00000541922 SMARCA4P51532 1647 aa42.24■■■■■ 4.35
C2CD3-216ENST00000541922 NCAPD3P42695 1498 aa42.15■■■■■ 4.34
C2CD3-216ENST00000541922 BAZ1AQ9NRL2 1556 aaPredicted RBP42.13■■■■■ 4.33
C2CD3-216ENST00000541922 ATAD2BQ9ULI0 1458 aa42.11■■■■■ 4.33
C2CD3-216ENST00000541922 SMARCA2P51531 1590 aa42.05■■■■■ 4.32
C2CD3-216ENST00000541922 HMGXB3Q12766 1538 aa41.9■■■■■ 4.3
C2CD3-216ENST00000541922 MROH2BQ7Z745 1585 aa41.84■■■■■ 4.29
C2CD3-216ENST00000541922 PEG3Q9GZU2 1588 aa41.8■■■■■ 4.28
C2CD3-216ENST00000541922 BAZ1BQ9UIG0 1483 aaKnown RBP41.76■■■■■ 4.28
C2CD3-216ENST00000541922 WIZO95785 1651 aa41.39■■■■■ 4.22
C2CD3-216ENST00000541922 ERCC6Q03468 1493 aa41.32■■■■■ 4.2
C2CD3-216ENST00000541922 NESP48681 1621 aa41.29■■■■■ 4.2
C2CD3-216ENST00000541922 RSF1Q96T23 1441 aaPredicted RBP41.19■■■■■ 4.18
C2CD3-216ENST00000541922 LAMC3Q9Y6N6 1575 aa41.12■■■■■ 4.17
C2CD3-216ENST00000541922 CUX2O14529 1486 aa41.01■■■■■ 4.16
C2CD3-216ENST00000541922 CADPSQ9ULU8 1353 aa40.9■■■■■ 4.14
C2CD3-216ENST00000541922 TOP2AP11388 1531 aaKnown RBP40.9■■■■■ 4.14
C2CD3-216ENST00000541922 PDS5BQ9NTI5 1447 aa40.87■■■■■ 4.13
C2CD3-216ENST00000541922 KIF21AQ7Z4S6 1674 aa40.81■■■■■ 4.12
C2CD3-216ENST00000541922 THOC2Q8NI27 1593 aaKnown RBP40.75■■■■■ 4.11
C2CD3-216ENST00000541922 CFTRP13569 1480 aa40.56■■■■■ 4.08
C2CD3-216ENST00000541922 MRC2Q9UBG0 1479 aa40.47■■■■■ 4.07
C2CD3-216ENST00000541922 FANCD2Q9BXW9 1451 aa40.45■■■■■ 4.07
C2CD3-216ENST00000541922 CEP164Q9UPV0 1460 aa40.45■■■■■ 4.07
C2CD3-216ENST00000541922 CCDC88BA6NC98 1476 aa40.43■■■■■ 4.06
C2CD3-216ENST00000541922 WDR62O43379 1518 aa40.34■■■■■ 4.05
C2CD3-216ENST00000541922 DNAJC5Q9H3Z4 198 aa40.28■■■■■ 4.04
C2CD3-216ENST00000541922 PRDM2Q13029 1718 aa40.26■■■■■ 4.04
C2CD3-216ENST00000541922 URB2Q14146 1524 aaKnown RBP40.06■■■■■ 4
C2CD3-216ENST00000541922 SUPT5HO00267 1087 aaKnown RBP39.88■■■■□ 3.97
C2CD3-216ENST00000541922 TOPBP1Q92547 1522 aa39.75■■■■□ 3.95
C2CD3-216ENST00000541922 ABCC8Q09428 1581 aa39.73■■■■□ 3.95
C2CD3-216ENST00000541922 DNMBPQ6XZF7 1577 aa39.67■■■■□ 3.94
C2CD3-216ENST00000541922 IFT140Q96RY7 1462 aa39.61■■■■□ 3.93
C2CD3-216ENST00000541922 ZNF608Q9ULD9 1512 aaPredicted RBP39.45■■■■□ 3.91
C2CD3-216ENST00000541922 POLA1P09884 1462 aaPredicted RBP39.37■■■■□ 3.89
C2CD3-216ENST00000541922 TARBP1Q13395 1621 aaKnown RBP39.34■■■■□ 3.89
C2CD3-216ENST00000541922 EIF4G3O43432 1585 aaKnown RBP39.29■■■■□ 3.88
C2CD3-216ENST00000541922 CUX1P39880 1505 aa39.28■■■■□ 3.88
C2CD3-216ENST00000541922 OSCARQ8IYS5 282 aa39.26■■■■□ 3.88
C2CD3-216ENST00000541922 FGD5Q6ZNL6 1462 aa39.23■■■■□ 3.87
C2CD3-216ENST00000541922 SOGA1O94964 1423 aa39.23■■■■□ 3.87
C2CD3-216ENST00000541922 RAD54L2Q9Y4B4 1467 aa39.22■■■■□ 3.87
C2CD3-216ENST00000541922 AQRO60306 1485 aaKnown RBP eCLIP39.19■■■■□ 3.86
C2CD3-216ENST00000541922 TDRD9Q8NDG6 1382 aaKnown RBP39.06■■■■□ 3.84
C2CD3-216ENST00000541922 WDR97A6NE52 1622 aa39■■■■□ 3.83
C2CD3-216ENST00000541922 CHD1O14646 1710 aa38.91■■■■□ 3.82
C2CD3-216ENST00000541922 WRNQ14191 1432 aaPredicted RBP eCLIP38.88■■■■□ 3.81
C2CD3-216ENST00000541922 FBLN2P98095 1184 aa38.86■■■■□ 3.81
C2CD3-216ENST00000541922 BIVM-ERCC5R4GMW8 1640 aa38.83■■■■□ 3.81
C2CD3-216ENST00000541922 TOP2BQ02880 1626 aa38.82■■■■□ 3.81
C2CD3-216ENST00000541922 SNAPC4Q5SXM2 1469 aa38.82■■■■□ 3.81
C2CD3-216ENST00000541922 GRIN2BQ13224 1484 aa38.81■■■■□ 3.8
C2CD3-216ENST00000541922 ABCA10Q8WWZ4 1543 aa38.81■■■■□ 3.8
C2CD3-216ENST00000541922 TRIM41Q8WV44 630 aa38.81■■■■□ 3.8
C2CD3-216ENST00000541922 SYNJ1O43426 1573 aa38.78■■■■□ 3.8
C2CD3-216ENST00000541922 GAPVD1Q14C86 1478 aa38.76■■■■□ 3.8
C2CD3-216ENST00000541922 MAGI1Q96QZ7 1491 aaPredicted RBP38.75■■■■□ 3.79
C2CD3-216ENST00000541922 PBRM1Q86U86 1689 aa38.72■■■■□ 3.79
C2CD3-216ENST00000541922 ABCA5Q8WWZ7 1642 aa38.7■■■■□ 3.79
C2CD3-216ENST00000541922 RIMBP3CA6NJZ7 1639 aa38.67■■■■□ 3.78
C2CD3-216ENST00000541922 RIMBP3BA6NNM3 1639 aa38.67■■■■□ 3.78
C2CD3-216ENST00000541922 RIMBP3Q9UFD9 1639 aa38.67■■■■□ 3.78
C2CD3-216ENST00000541922 CHMP7Q8WUX9 453 aaPredicted RBP38.66■■■■□ 3.78
C2CD3-216ENST00000541922 SYNJ2O15056 1496 aa38.6■■■■□ 3.77
C2CD3-216ENST00000541922 ARHGEF11O15085 1522 aa38.6■■■■□ 3.77
C2CD3-216ENST00000541922 CLASP1Q7Z460 1538 aa38.44■■■■□ 3.74
C2CD3-216ENST00000541922 ADAMTS12P58397 1594 aa38.36■■■■□ 3.73
C2CD3-216ENST00000541922 ERICH3Q5RHP9 1530 aa38.34■■■■□ 3.73
C2CD3-216ENST00000541922 GRIN2AQ12879 1464 aa38.31■■■■□ 3.72
C2CD3-216ENST00000541922 CYB5RLQ6IPT4 315 aa38.31■■■■□ 3.72
C2CD3-216ENST00000541922 FHAD1B1AJZ9 1412 aa38.29■■■■□ 3.72
C2CD3-216ENST00000541922 ARAP1Q96P48 1450 aa38.26■■■■□ 3.72
C2CD3-216ENST00000541922 NUP160Q12769 1436 aa38.14■■■■□ 3.7
C2CD3-216ENST00000541922 CEP170Q5SW79 1584 aa38.14■■■■□ 3.7
C2CD3-216ENST00000541922 KIF27Q86VH2 1401 aa38.11■■■■□ 3.69
C2CD3-216ENST00000541922 IGF1RP08069 1367 aa37.98■■■■□ 3.67
C2CD3-216ENST00000541922 CUL7Q14999 1698 aa37.92■■■■□ 3.66
C2CD3-216ENST00000541922 SHROOM2Q13796 1616 aa37.91■■■■□ 3.66
C2CD3-216ENST00000541922 ERCC6L2Q5T890 1561 aa37.88■■■■□ 3.65
C2CD3-216ENST00000541922 RUSC2Q8N2Y8 1516 aa37.81■■■■□ 3.64
C2CD3-216ENST00000541922 JPH4Q96JJ6 628 aa37.78■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms