RNA–Protein interactions for RNA: ENST00000541795.1

RAB6A-208, Transcript of RAB6A, member RAS oncogene family, human

TSL 2

Gene RAB6A, Length 1,812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB6A-208	ENST00000541795	NISCH	Q9Y2I1	1504 aa		40.4	■■■■■ 4.06
RAB6A-208	ENST00000541795	CCDC180	Q9P1Z9	1646 aa		35.35	■■■■□ 3.25
RAB6A-208	ENST00000541795	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.92	■■■■□ 3.02
RAB6A-208	ENST00000541795	ABCC9	O60706	1549 aa		33.49	■■■□□ 2.95
RAB6A-208	ENST00000541795	DCAF1	Q9Y4B6	1507 aa		33.41	■■■□□ 2.94
RAB6A-208	ENST00000541795	DCAF8L2	P0C7V8	631 aa		33.35	■■■□□ 2.93
RAB6A-208	ENST00000541795	MYO15B	Q96JP2	1530 aa		33.07	■■■□□ 2.88
RAB6A-208	ENST00000541795	NACAD	O15069	1562 aa		32.92	■■■□□ 2.86
RAB6A-208	ENST00000541795	SHROOM4	Q9ULL8	1493 aa		32.83	■■■□□ 2.85
RAB6A-208	ENST00000541795	RB1CC1	Q8TDY2	1594 aa		32.68	■■■□□ 2.82
RAB6A-208	ENST00000541795	SCRIB	Q14160	1630 aa		32.47	■■■□□ 2.79
RAB6A-208	ENST00000541795	UNC13A	Q9UPW8	1703 aa		32.06	■■■□□ 2.72
RAB6A-208	ENST00000541795	BICRA	Q9NZM4	1560 aa		31.68	■■■□□ 2.66
RAB6A-208	ENST00000541795	PABPN1	Q86U42	306 aa	Known RBP eCLIP	31.52	■■■□□ 2.64
RAB6A-208	ENST00000541795	SUPT5H	O00267	1087 aa	Known RBP	31.5	■■■□□ 2.63
RAB6A-208	ENST00000541795	CECR2	Q9BXF3	1484 aa		31.38	■■■□□ 2.61
RAB6A-208	ENST00000541795	RSF1	Q96T23	1441 aa	Predicted RBP	31.27	■■■□□ 2.6
RAB6A-208	ENST00000541795	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	31.22	■■■□□ 2.59
RAB6A-208	ENST00000541795	MROH2B	Q7Z745	1585 aa		31.2	■■■□□ 2.59
RAB6A-208	ENST00000541795	SMARCA4	P51532	1647 aa		31.11	■■■□□ 2.57
RAB6A-208	ENST00000541795	WIZ	O95785	1651 aa		30.97	■■■□□ 2.55
RAB6A-208	ENST00000541795	EIF4G1	Q04637	1599 aa	Known RBP	30.74	■■■□□ 2.51
RAB6A-208	ENST00000541795	PEG3	Q9GZU2	1588 aa		30.73	■■■□□ 2.51
RAB6A-208	ENST00000541795	TOP2A	P11388	1531 aa	Known RBP	30.64	■■■□□ 2.5
RAB6A-208	ENST00000541795	SMARCA2	P51531	1590 aa		30.61	■■■□□ 2.49
RAB6A-208	ENST00000541795	ATAD2B	Q9ULI0	1458 aa		30.6	■■■□□ 2.49
RAB6A-208	ENST00000541795	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.44	■■■□□ 2.46
RAB6A-208	ENST00000541795	NCAPD3	P42695	1498 aa		30.35	■■■□□ 2.45
RAB6A-208	ENST00000541795	HMGXB3	Q12766	1538 aa		30.34	■■■□□ 2.45
RAB6A-208	ENST00000541795	CC2D2A	Q9P2K1	1620 aa		30.32	■■■□□ 2.44
RAB6A-208	ENST00000541795	CCDC88B	A6NC98	1476 aa		30.29	■■■□□ 2.44
RAB6A-208	ENST00000541795	CHIC1	Q5VXU3	224 aa		30.08	■■■□□ 2.41
RAB6A-208	ENST00000541795	CFTR	P13569	1480 aa		29.65	■■■□□ 2.34
RAB6A-208	ENST00000541795	TRIM41	Q8WV44	630 aa		29.64	■■■□□ 2.33
RAB6A-208	ENST00000541795	ABCC8	Q09428	1581 aa		29.64	■■■□□ 2.33
RAB6A-208	ENST00000541795	DNAJC5B	Q9UF47	199 aa		29.59	■■■□□ 2.33
RAB6A-208	ENST00000541795	PRDM2	Q13029	1718 aa		29.58	■■■□□ 2.33
RAB6A-208	ENST00000541795	CADPS	Q9ULU8	1353 aa		29.56	■■■□□ 2.32
RAB6A-208	ENST00000541795	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.45	■■■□□ 2.3
RAB6A-208	ENST00000541795	LAMC3	Q9Y6N6	1575 aa		29.38	■■■□□ 2.29
RAB6A-208	ENST00000541795	NES	P48681	1621 aa		29.35	■■■□□ 2.29
RAB6A-208	ENST00000541795	SYNJ1	O43426	1573 aa		29.35	■■■□□ 2.29
RAB6A-208	ENST00000541795	TOP2B	Q02880	1626 aa		29.26	■■■□□ 2.27
RAB6A-208	ENST00000541795	FANCD2	Q9BXW9	1451 aa		29.25	■■■□□ 2.27
RAB6A-208	ENST00000541795	BIVM-ERCC5	R4GMW8	1640 aa		29.24	■■■□□ 2.27
RAB6A-208	ENST00000541795	CUX1	P39880	1505 aa		29.19	■■■□□ 2.26
RAB6A-208	ENST00000541795	PDS5B	Q9NTI5	1447 aa		29.13	■■■□□ 2.25
RAB6A-208	ENST00000541795	CEP164	Q9UPV0	1460 aa		29.1	■■■□□ 2.25
RAB6A-208	ENST00000541795	FAM9A	Q8IZU1	332 aa	Predicted RBP	29.08	■■■□□ 2.25
RAB6A-208	ENST00000541795	KIF21A	Q7Z4S6	1674 aa		29.06	■■■□□ 2.24
RAB6A-208	ENST00000541795	SOGA1	O94964	1423 aa		29.02	■■■□□ 2.24
RAB6A-208	ENST00000541795	DNMBP	Q6XZF7	1577 aa		29	■■■□□ 2.23
RAB6A-208	ENST00000541795	EEA1	Q15075	1411 aa		28.96	■■■□□ 2.23
RAB6A-208	ENST00000541795	TOPBP1	Q92547	1522 aa		28.93	■■■□□ 2.22
RAB6A-208	ENST00000541795	RUSC2	Q8N2Y8	1516 aa		28.92	■■■□□ 2.22
RAB6A-208	ENST00000541795	LOC105371045	A0A1W2PR82	267 aa		28.91	■■■□□ 2.22
RAB6A-208	ENST00000541795	URB2	Q14146	1524 aa	Known RBP	28.9	■■■□□ 2.22
RAB6A-208	ENST00000541795	FGD5	Q6ZNL6	1462 aa		28.9	■■■□□ 2.22
RAB6A-208	ENST00000541795	MRC2	Q9UBG0	1479 aa		28.78	■■■□□ 2.2
RAB6A-208	ENST00000541795	CSRNP3	Q8WYN3	585 aa		28.78	■■■□□ 2.2
RAB6A-208	ENST00000541795	POLA1	P09884	1462 aa	Predicted RBP	28.78	■■■□□ 2.2
RAB6A-208	ENST00000541795	ERCC6	Q03468	1493 aa		28.75	■■■□□ 2.19
RAB6A-208	ENST00000541795	KIF27	Q86VH2	1401 aa		28.72	■■■□□ 2.19
RAB6A-208	ENST00000541795	CUX2	O14529	1486 aa		28.68	■■■□□ 2.18
RAB6A-208	ENST00000541795	EHMT2	Q96KQ7	1210 aa		28.68	■■■□□ 2.18
RAB6A-208	ENST00000541795	RAD54L2	Q9Y4B4	1467 aa		28.67	■■■□□ 2.18
RAB6A-208	ENST00000541795	WDR62	O43379	1518 aa		28.64	■■■□□ 2.18
RAB6A-208	ENST00000541795	ABCA10	Q8WWZ4	1543 aa		28.64	■■■□□ 2.18
RAB6A-208	ENST00000541795	KIF21B	O75037	1637 aa		28.62	■■■□□ 2.17
RAB6A-208	ENST00000541795	WDR97	A6NE52	1622 aa		28.6	■■■□□ 2.17
RAB6A-208	ENST00000541795	THOC2	Q8NI27	1593 aa	Known RBP	28.6	■■■□□ 2.17
RAB6A-208	ENST00000541795	GOLGA3	Q08378	1498 aa		28.56	■■■□□ 2.16
RAB6A-208	ENST00000541795	TARBP1	Q13395	1621 aa	Known RBP	28.52	■■■□□ 2.16
RAB6A-208	ENST00000541795	PRX	Q9BXM0	1461 aa		28.49	■■■□□ 2.15
RAB6A-208	ENST00000541795	RAPGEF2	Q9Y4G8	1499 aa		28.45	■■■□□ 2.14
RAB6A-208	ENST00000541795	ERICH3	Q5RHP9	1530 aa		28.45	■■■□□ 2.14
RAB6A-208	ENST00000541795	ABCA5	Q8WWZ7	1642 aa		28.44	■■■□□ 2.14
RAB6A-208	ENST00000541795	IGF1R	P08069	1367 aa		28.44	■■■□□ 2.14
RAB6A-208	ENST00000541795	TNIK	Q9UKE5	1360 aa		28.42	■■■□□ 2.14
RAB6A-208	ENST00000541795	UBTF	P17480	764 aa	Known RBP	28.41	■■■□□ 2.14
RAB6A-208	ENST00000541795	IFT140	Q96RY7	1462 aa		28.4	■■■□□ 2.14
RAB6A-208	ENST00000541795	TDRD9	Q8NDG6	1382 aa	Known RBP	28.38	■■■□□ 2.13
RAB6A-208	ENST00000541795	GAPVD1	Q14C86	1478 aa		28.36	■■■□□ 2.13
RAB6A-208	ENST00000541795	CUL7	Q14999	1698 aa		28.32	■■■□□ 2.12
RAB6A-208	ENST00000541795	CARMIL1	Q5VZK9	1371 aa		28.32	■■■□□ 2.12
RAB6A-208	ENST00000541795	CEP162	Q5TB80	1403 aa		28.27	■■■□□ 2.12
RAB6A-208	ENST00000541795	PBRM1	Q86U86	1689 aa		28.27	■■■□□ 2.12
RAB6A-208	ENST00000541795	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.24	■■■□□ 2.11
RAB6A-208	ENST00000541795	AQR	O60306	1485 aa	Known RBP eCLIP	28.23	■■■□□ 2.11
RAB6A-208	ENST00000541795	EIF4G3	O43432	1585 aa	Known RBP	28.19	■■■□□ 2.1
RAB6A-208	ENST00000541795	GRIN2B	Q13224	1484 aa		28.16	■■■□□ 2.1
RAB6A-208	ENST00000541795	ADAMTS12	P58397	1594 aa		28.09	■■■□□ 2.09
RAB6A-208	ENST00000541795	CLIP1	P30622	1438 aa		28.09	■■■□□ 2.09
RAB6A-208	ENST00000541795	FHAD1	B1AJZ9	1412 aa		28.05	■■■□□ 2.08
RAB6A-208	ENST00000541795	CTTNBP2	Q8WZ74	1663 aa		28	■■■□□ 2.07
RAB6A-208	ENST00000541795	SNAPC4	Q5SXM2	1469 aa		28	■■■□□ 2.07
RAB6A-208	ENST00000541795	RANGAP1	P46060	587 aa	Predicted RBP	27.98	■■■□□ 2.07
RAB6A-208	ENST00000541795	MAGI1	Q96QZ7	1491 aa	Predicted RBP	27.95	■■■□□ 2.06
RAB6A-208	ENST00000541795	ARHGAP35	Q9NRY4	1499 aa		27.85	■■■□□ 2.05
RAB6A-208	ENST00000541795	SYNJ2	O15056	1496 aa		27.84	■■■□□ 2.05

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