RNA–Protein interactions for RNA: ENST00000541669.5

LDHC-207, Transcript of lactate dehydrogenase C, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDHC, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-207ENST00000541669 NISCHQ9Y2I1 1504 aa22.95■■□□□ 1.26
LDHC-207ENST00000541669 CCDC180Q9P1Z9 1646 aa20.3■□□□□ 0.84
LDHC-207ENST00000541669 ABCC9O60706 1549 aa19.36■□□□□ 0.69
LDHC-207ENST00000541669 ZCCHC6Q5VYS8 1495 aaKnown RBP19.21■□□□□ 0.67
LDHC-207ENST00000541669 DCAF1Q9Y4B6 1507 aa19.03■□□□□ 0.64
LDHC-207ENST00000541669 MYO15BQ96JP2 1530 aa18.95■□□□□ 0.62
LDHC-207ENST00000541669 NACADO15069 1562 aa18.94■□□□□ 0.62
LDHC-207ENST00000541669 DCAF8L2P0C7V8 631 aa18.92■□□□□ 0.62
LDHC-207ENST00000541669 RB1CC1Q8TDY2 1594 aa18.86■□□□□ 0.61
LDHC-207ENST00000541669 UNC13AQ9UPW8 1703 aa18.55■□□□□ 0.56
LDHC-207ENST00000541669 SCRIBQ14160 1630 aa18.51■□□□□ 0.55
LDHC-207ENST00000541669 AEBP2Q6ZN18 517 aaPredicted RBP18.43■□□□□ 0.54
LDHC-207ENST00000541669 SHROOM4Q9ULL8 1493 aa18.33■□□□□ 0.52
LDHC-207ENST00000541669 BICRAQ9NZM4 1560 aa18.27■□□□□ 0.52
LDHC-207ENST00000541669 PABPN1Q86U42 306 aaKnown RBP eCLIP18.12■□□□□ 0.49
LDHC-207ENST00000541669 CECR2Q9BXF3 1484 aa17.8■□□□□ 0.44
LDHC-207ENST00000541669 BAZ1AQ9NRL2 1556 aaPredicted RBP17.78■□□□□ 0.44
LDHC-207ENST00000541669 EIF4G1Q04637 1599 aaKnown RBP17.76■□□□□ 0.43
LDHC-207ENST00000541669 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
LDHC-207ENST00000541669 MROH2BQ7Z745 1585 aa17.69■□□□□ 0.42
LDHC-207ENST00000541669 RSF1Q96T23 1441 aaPredicted RBP17.61■□□□□ 0.41
LDHC-207ENST00000541669 CC2D2AQ9P2K1 1620 aa17.59■□□□□ 0.41
LDHC-207ENST00000541669 PEG3Q9GZU2 1588 aa17.57■□□□□ 0.4
LDHC-207ENST00000541669 WIZO95785 1651 aa17.57■□□□□ 0.4
LDHC-207ENST00000541669 SMARCA2P51531 1590 aa17.54■□□□□ 0.4
LDHC-207ENST00000541669 ATAD2BQ9ULI0 1458 aa17.5■□□□□ 0.39
LDHC-207ENST00000541669 SUPT5HO00267 1087 aaKnown RBP17.43■□□□□ 0.38
LDHC-207ENST00000541669 NCAPD3P42695 1498 aa17.43■□□□□ 0.38
LDHC-207ENST00000541669 HMGXB3Q12766 1538 aa17.42■□□□□ 0.38
LDHC-207ENST00000541669 BAZ1BQ9UIG0 1483 aaKnown RBP17.39■□□□□ 0.38
LDHC-207ENST00000541669 TOP2AP11388 1531 aaKnown RBP17.38■□□□□ 0.37
LDHC-207ENST00000541669 DNAJC5BQ9UF47 199 aa17.34■□□□□ 0.37
LDHC-207ENST00000541669 CHIC1Q5VXU3 224 aa17.29■□□□□ 0.36
LDHC-207ENST00000541669 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
LDHC-207ENST00000541669 PRDM2Q13029 1718 aa17.01■□□□□ 0.31
LDHC-207ENST00000541669 LAMC3Q9Y6N6 1575 aa16.95■□□□□ 0.3
LDHC-207ENST00000541669 CFTRP13569 1480 aa16.94■□□□□ 0.3
LDHC-207ENST00000541669 CADPSQ9ULU8 1353 aa16.93■□□□□ 0.3
LDHC-207ENST00000541669 NESP48681 1621 aa16.89■□□□□ 0.29
LDHC-207ENST00000541669 KIF21AQ7Z4S6 1674 aa16.8■□□□□ 0.28
LDHC-207ENST00000541669 PDS5BQ9NTI5 1447 aa16.77■□□□□ 0.28
LDHC-207ENST00000541669 FANCD2Q9BXW9 1451 aa16.75■□□□□ 0.27
LDHC-207ENST00000541669 CEP164Q9UPV0 1460 aa16.7■□□□□ 0.26
LDHC-207ENST00000541669 ERCC6Q03468 1493 aa16.67■□□□□ 0.26
LDHC-207ENST00000541669 ABCC8Q09428 1581 aa16.67■□□□□ 0.26
LDHC-207ENST00000541669 WRNQ14191 1432 aaPredicted RBP eCLIP16.6■□□□□ 0.25
LDHC-207ENST00000541669 THOC2Q8NI27 1593 aaKnown RBP16.6■□□□□ 0.25
LDHC-207ENST00000541669 BIVM-ERCC5R4GMW8 1640 aa16.59■□□□□ 0.25
LDHC-207ENST00000541669 MRC2Q9UBG0 1479 aa16.59■□□□□ 0.25
LDHC-207ENST00000541669 DNMBPQ6XZF7 1577 aa16.59■□□□□ 0.25
LDHC-207ENST00000541669 SYNJ1O43426 1573 aa16.58■□□□□ 0.24
LDHC-207ENST00000541669 CUX1P39880 1505 aa16.58■□□□□ 0.24
LDHC-207ENST00000541669 TOP2BQ02880 1626 aa16.57■□□□□ 0.24
LDHC-207ENST00000541669 URB2Q14146 1524 aaKnown RBP16.57■□□□□ 0.24
LDHC-207ENST00000541669 WDR62O43379 1518 aa16.55■□□□□ 0.24
LDHC-207ENST00000541669 TOPBP1Q92547 1522 aa16.55■□□□□ 0.24
LDHC-207ENST00000541669 TRIM41Q8WV44 630 aa16.46■□□□□ 0.23
LDHC-207ENST00000541669 FGD5Q6ZNL6 1462 aa16.45■□□□□ 0.22
LDHC-207ENST00000541669 POLA1P09884 1462 aaPredicted RBP16.43■□□□□ 0.22
LDHC-207ENST00000541669 WDR97A6NE52 1622 aa16.38■□□□□ 0.21
LDHC-207ENST00000541669 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
LDHC-207ENST00000541669 CUX2O14529 1486 aa16.36■□□□□ 0.21
LDHC-207ENST00000541669 SOGA1O94964 1423 aa16.34■□□□□ 0.21
LDHC-207ENST00000541669 RAD54L2Q9Y4B4 1467 aa16.33■□□□□ 0.21
LDHC-207ENST00000541669 IFT140Q96RY7 1462 aa16.33■□□□□ 0.2
LDHC-207ENST00000541669 ABCA10Q8WWZ4 1543 aa16.31■□□□□ 0.2
LDHC-207ENST00000541669 ABCA5Q8WWZ7 1642 aa16.26■□□□□ 0.19
LDHC-207ENST00000541669 EIF4G3O43432 1585 aaKnown RBP16.23■□□□□ 0.19
LDHC-207ENST00000541669 KIF27Q86VH2 1401 aa16.22■□□□□ 0.19
LDHC-207ENST00000541669 PBRM1Q86U86 1689 aa16.22■□□□□ 0.19
LDHC-207ENST00000541669 ZNF608Q9ULD9 1512 aaPredicted RBP16.21■□□□□ 0.19
LDHC-207ENST00000541669 EEA1Q15075 1411 aa16.2■□□□□ 0.18
LDHC-207ENST00000541669 RUSC2Q8N2Y8 1516 aa16.19■□□□□ 0.18
LDHC-207ENST00000541669 GAPVD1Q14C86 1478 aa16.18■□□□□ 0.18
LDHC-207ENST00000541669 TDRD9Q8NDG6 1382 aaKnown RBP16.18■□□□□ 0.18
LDHC-207ENST00000541669 AQRO60306 1485 aaKnown RBP eCLIP16.16■□□□□ 0.18
LDHC-207ENST00000541669 ERICH3Q5RHP9 1530 aa16.14■□□□□ 0.17
LDHC-207ENST00000541669 GRIN2BQ13224 1484 aa16.12■□□□□ 0.17
LDHC-207ENST00000541669 CUL7Q14999 1698 aa16.12■□□□□ 0.17
LDHC-207ENST00000541669 FAM9AQ8IZU1 332 aaPredicted RBP16.09■□□□□ 0.17
LDHC-207ENST00000541669 IGF1RP08069 1367 aa16.08■□□□□ 0.16
LDHC-207ENST00000541669 CSRNP3Q8WYN3 585 aa16.07■□□□□ 0.16
LDHC-207ENST00000541669 ADAMTS12P58397 1594 aa16.06■□□□□ 0.16
LDHC-207ENST00000541669 MAGI1Q96QZ7 1491 aaPredicted RBP16.05■□□□□ 0.16
LDHC-207ENST00000541669 KIF21BO75037 1637 aa16.05■□□□□ 0.16
LDHC-207ENST00000541669 SNAPC4Q5SXM2 1469 aa16.04■□□□□ 0.16
LDHC-207ENST00000541669 PRXQ9BXM0 1461 aa16.02■□□□□ 0.15
LDHC-207ENST00000541669 FHAD1B1AJZ9 1412 aa16■□□□□ 0.15
LDHC-207ENST00000541669 CARMIL1Q5VZK9 1371 aa16■□□□□ 0.15
LDHC-207ENST00000541669 CHD1O14646 1710 aa15.99■□□□□ 0.15
LDHC-207ENST00000541669 RAPGEF2Q9Y4G8 1499 aa15.98■□□□□ 0.15
LDHC-207ENST00000541669 SYNJ2O15056 1496 aa15.97■□□□□ 0.15
LDHC-207ENST00000541669 GOLGA3Q08378 1498 aa15.95■□□□□ 0.14
LDHC-207ENST00000541669 CTTNBP2Q8WZ74 1663 aa15.92■□□□□ 0.14
LDHC-207ENST00000541669 GRIN2AQ12879 1464 aa15.92■□□□□ 0.14
LDHC-207ENST00000541669 CHMP7Q8WUX9 453 aaPredicted RBP15.89■□□□□ 0.13
LDHC-207ENST00000541669 FBLN2P98095 1184 aa15.85■□□□□ 0.13
LDHC-207ENST00000541669 CEP170Q5SW79 1584 aa15.85■□□□□ 0.13
LDHC-207ENST00000541669 EHMT2Q96KQ7 1210 aa15.84■□□□□ 0.13
LDHC-207ENST00000541669 LOC105371045A0A1W2PR82 267 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms