RNA–Protein interactions for RNA: ENST00000541591.5

SUDS3-203, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

TSL 3

Gene SUDS3, Length 561 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-203ENST00000541591 NISCHQ9Y2I1 1504 aa35.01■■■■□ 3.19
SUDS3-203ENST00000541591 CCDC180Q9P1Z9 1646 aa31.42■■■□□ 2.62
SUDS3-203ENST00000541591 ABCC9O60706 1549 aa31.23■■■□□ 2.59
SUDS3-203ENST00000541591 RB1CC1Q8TDY2 1594 aa29.73■■■□□ 2.35
SUDS3-203ENST00000541591 NACADO15069 1562 aa29.52■■■□□ 2.32
SUDS3-203ENST00000541591 DCAF8L2P0C7V8 631 aa29.5■■■□□ 2.31
SUDS3-203ENST00000541591 UNC13AQ9UPW8 1703 aa29.41■■■□□ 2.3
SUDS3-203ENST00000541591 ZCCHC6Q5VYS8 1495 aaKnown RBP29.07■■■□□ 2.24
SUDS3-203ENST00000541591 PABPN1Q86U42 306 aaKnown RBP eCLIP29.05■■■□□ 2.24
SUDS3-203ENST00000541591 MYO15BQ96JP2 1530 aa29.04■■■□□ 2.24
SUDS3-203ENST00000541591 DNAJC5BQ9UF47 199 aa29.02■■■□□ 2.24
SUDS3-203ENST00000541591 BICRAQ9NZM4 1560 aa28.95■■■□□ 2.22
SUDS3-203ENST00000541591 DCAF1Q9Y4B6 1507 aa28.81■■■□□ 2.2
SUDS3-203ENST00000541591 SCRIBQ14160 1630 aa28.76■■■□□ 2.2
SUDS3-203ENST00000541591 SHROOM4Q9ULL8 1493 aa28.3■■■□□ 2.12
SUDS3-203ENST00000541591 CC2D2AQ9P2K1 1620 aa28.25■■■□□ 2.11
SUDS3-203ENST00000541591 EIF4G1Q04637 1599 aaKnown RBP28.18■■■□□ 2.1
SUDS3-203ENST00000541591 CECR2Q9BXF3 1484 aa28.02■■■□□ 2.08
SUDS3-203ENST00000541591 SMARCA4P51532 1647 aa27.37■■□□□ 1.97
SUDS3-203ENST00000541591 ATAD2BQ9ULI0 1458 aa27.21■■□□□ 1.95
SUDS3-203ENST00000541591 NCAPD3P42695 1498 aa27.18■■□□□ 1.94
SUDS3-203ENST00000541591 SMARCA2P51531 1590 aa27.15■■□□□ 1.94
SUDS3-203ENST00000541591 BAZ1AQ9NRL2 1556 aaPredicted RBP27.15■■□□□ 1.94
SUDS3-203ENST00000541591 HMGXB3Q12766 1538 aa27.1■■□□□ 1.93
SUDS3-203ENST00000541591 MROH2BQ7Z745 1585 aa27.05■■□□□ 1.92
SUDS3-203ENST00000541591 BAZ1BQ9UIG0 1483 aaKnown RBP27■■□□□ 1.91
SUDS3-203ENST00000541591 PEG3Q9GZU2 1588 aa26.97■■□□□ 1.91
SUDS3-203ENST00000541591 NESP48681 1621 aa26.92■■□□□ 1.9
SUDS3-203ENST00000541591 ERCC6Q03468 1493 aa26.88■■□□□ 1.89
SUDS3-203ENST00000541591 WIZO95785 1651 aa26.87■■□□□ 1.89
SUDS3-203ENST00000541591 KIF21AQ7Z4S6 1674 aa26.73■■□□□ 1.87
SUDS3-203ENST00000541591 CUX2O14529 1486 aa26.66■■□□□ 1.86
SUDS3-203ENST00000541591 LAMC3Q9Y6N6 1575 aa26.65■■□□□ 1.86
SUDS3-203ENST00000541591 THOC2Q8NI27 1593 aaKnown RBP26.63■■□□□ 1.85
SUDS3-203ENST00000541591 RSF1Q96T23 1441 aaPredicted RBP26.47■■□□□ 1.83
SUDS3-203ENST00000541591 TOP2AP11388 1531 aaKnown RBP26.39■■□□□ 1.82
SUDS3-203ENST00000541591 PDS5BQ9NTI5 1447 aa26.38■■□□□ 1.81
SUDS3-203ENST00000541591 CADPSQ9ULU8 1353 aa26.37■■□□□ 1.81
SUDS3-203ENST00000541591 DNAJC5Q9H3Z4 198 aa26.35■■□□□ 1.81
SUDS3-203ENST00000541591 PRDM2Q13029 1718 aa26.26■■□□□ 1.79
SUDS3-203ENST00000541591 MRC2Q9UBG0 1479 aa26.24■■□□□ 1.79
SUDS3-203ENST00000541591 WDR62O43379 1518 aa26.2■■□□□ 1.79
SUDS3-203ENST00000541591 CEP164Q9UPV0 1460 aa26.19■■□□□ 1.78
SUDS3-203ENST00000541591 FANCD2Q9BXW9 1451 aa26.17■■□□□ 1.78
SUDS3-203ENST00000541591 CFTRP13569 1480 aa26.15■■□□□ 1.78
SUDS3-203ENST00000541591 CCDC88BA6NC98 1476 aa26.06■■□□□ 1.76
SUDS3-203ENST00000541591 URB2Q14146 1524 aaKnown RBP26■■□□□ 1.75
SUDS3-203ENST00000541591 TOPBP1Q92547 1522 aa25.73■■□□□ 1.71
SUDS3-203ENST00000541591 DNMBPQ6XZF7 1577 aa25.68■■□□□ 1.7
SUDS3-203ENST00000541591 ZNF608Q9ULD9 1512 aaPredicted RBP25.66■■□□□ 1.7
SUDS3-203ENST00000541591 EIF4G3O43432 1585 aaKnown RBP25.61■■□□□ 1.69
SUDS3-203ENST00000541591 IFT140Q96RY7 1462 aa25.6■■□□□ 1.69
SUDS3-203ENST00000541591 TARBP1Q13395 1621 aaKnown RBP25.55■■□□□ 1.68
SUDS3-203ENST00000541591 SUPT5HO00267 1087 aaKnown RBP25.54■■□□□ 1.68
SUDS3-203ENST00000541591 ABCC8Q09428 1581 aa25.53■■□□□ 1.68
SUDS3-203ENST00000541591 CHD1O14646 1710 aa25.51■■□□□ 1.67
SUDS3-203ENST00000541591 TRIM41Q8WV44 630 aa25.48■■□□□ 1.67
SUDS3-203ENST00000541591 POLA1P09884 1462 aaPredicted RBP25.47■■□□□ 1.67
SUDS3-203ENST00000541591 RAD54L2Q9Y4B4 1467 aa25.43■■□□□ 1.66
SUDS3-203ENST00000541591 OSCARQ8IYS5 282 aa25.42■■□□□ 1.66
SUDS3-203ENST00000541591 CUX1P39880 1505 aa25.42■■□□□ 1.66
SUDS3-203ENST00000541591 AQRO60306 1485 aaKnown RBP eCLIP25.41■■□□□ 1.663e-7■■□□□ 13.9
SUDS3-203ENST00000541591 FGD5Q6ZNL6 1462 aa25.38■■□□□ 1.65
SUDS3-203ENST00000541591 RIMBP3CA6NJZ7 1639 aa25.34■■□□□ 1.65
SUDS3-203ENST00000541591 RIMBP3BA6NNM3 1639 aa25.34■■□□□ 1.65
SUDS3-203ENST00000541591 RIMBP3Q9UFD9 1639 aa25.34■■□□□ 1.65
SUDS3-203ENST00000541591 WDR97A6NE52 1622 aa25.34■■□□□ 1.65
SUDS3-203ENST00000541591 SOGA1O94964 1423 aa25.29■■□□□ 1.64
SUDS3-203ENST00000541591 PBRM1Q86U86 1689 aa25.27■■□□□ 1.64
SUDS3-203ENST00000541591 TDRD9Q8NDG6 1382 aaKnown RBP25.27■■□□□ 1.64
SUDS3-203ENST00000541591 FBLN2P98095 1184 aa25.19■■□□□ 1.62
SUDS3-203ENST00000541591 SNAPC4Q5SXM2 1469 aa25.19■■□□□ 1.62
SUDS3-203ENST00000541591 ARHGEF11O15085 1522 aa25.18■■□□□ 1.62
SUDS3-203ENST00000541591 BIVM-ERCC5R4GMW8 1640 aa25.12■■□□□ 1.61
SUDS3-203ENST00000541591 SYNJ1O43426 1573 aa25.11■■□□□ 1.61
SUDS3-203ENST00000541591 ABCA5Q8WWZ7 1642 aa25.09■■□□□ 1.61
SUDS3-203ENST00000541591 GRIN2BQ13224 1484 aa25.05■■□□□ 1.6
SUDS3-203ENST00000541591 TOP2BQ02880 1626 aa25.04■■□□□ 1.6
SUDS3-203ENST00000541591 GAPVD1Q14C86 1478 aa25.02■■□□□ 1.6
SUDS3-203ENST00000541591 MAGI1Q96QZ7 1491 aaPredicted RBP25.02■■□□□ 1.6
SUDS3-203ENST00000541591 ABCA10Q8WWZ4 1543 aa25.02■■□□□ 1.6
SUDS3-203ENST00000541591 CLASP1Q7Z460 1538 aa25■■□□□ 1.59
SUDS3-203ENST00000541591 WRNQ14191 1432 aaPredicted RBP eCLIP24.97■■□□□ 1.59
SUDS3-203ENST00000541591 ARAP1Q96P48 1450 aa24.96■■□□□ 1.59
SUDS3-203ENST00000541591 SYNJ2O15056 1496 aa24.96■■□□□ 1.59
SUDS3-203ENST00000541591 CHMP7Q8WUX9 453 aaPredicted RBP24.95■■□□□ 1.58
SUDS3-203ENST00000541591 CYB5RLQ6IPT4 315 aa24.91■■□□□ 1.58
SUDS3-203ENST00000541591 ADAMTS12P58397 1594 aa24.9■■□□□ 1.58
SUDS3-203ENST00000541591 CEP170Q5SW79 1584 aa24.8■■□□□ 1.56
SUDS3-203ENST00000541591 GRIN2AQ12879 1464 aa24.78■■□□□ 1.56
SUDS3-203ENST00000541591 ERCC6L2Q5T890 1561 aa24.75■■□□□ 1.55
SUDS3-203ENST00000541591 ERICH3Q5RHP9 1530 aa24.71■■□□□ 1.55
SUDS3-203ENST00000541591 FHAD1B1AJZ9 1412 aa24.66■■□□□ 1.54
SUDS3-203ENST00000541591 NUP160Q12769 1436 aa24.63■■□□□ 1.53
SUDS3-203ENST00000541591 SHROOM2Q13796 1616 aa24.63■■□□□ 1.53
SUDS3-203ENST00000541591 TRHP20396 242 aaPredicted RBP24.6■■□□□ 1.53
SUDS3-203ENST00000541591 RUSC2Q8N2Y8 1516 aa24.56■■□□□ 1.52
SUDS3-203ENST00000541591 CUL7Q14999 1698 aa24.5■■□□□ 1.51
SUDS3-203ENST00000541591 KIF27Q86VH2 1401 aa24.44■■□□□ 1.5
SUDS3-203ENST00000541591 PRG4Q92954 1404 aaPredicted RBP24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms