RNA–Protein interactions for RNA: ENST00000541171.1

LEMD3-203, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 856 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-203ENST00000541171 NISCHQ9Y2I1 1504 aa60■■■■■ 7.19
LEMD3-203ENST00000541171 ABCC9O60706 1549 aa53.98■■■■■ 6.23
LEMD3-203ENST00000541171 CCDC180Q9P1Z9 1646 aa53.75■■■■■ 6.19
LEMD3-203ENST00000541171 RB1CC1Q8TDY2 1594 aa51.26■■■■■ 5.8
LEMD3-203ENST00000541171 DCAF8L2P0C7V8 631 aa50.91■■■■■ 5.74
LEMD3-203ENST00000541171 NACADO15069 1562 aa50.88■■■■■ 5.74
LEMD3-203ENST00000541171 DNAJC5BQ9UF47 199 aa50.69■■■■■ 5.71
LEMD3-203ENST00000541171 PABPN1Q86U42 306 aaKnown RBP eCLIP50.33■■■■■ 5.65
LEMD3-203ENST00000541171 MYO15BQ96JP2 1530 aa50.11■■■■■ 5.61
LEMD3-203ENST00000541171 UNC13AQ9UPW8 1703 aa50.04■■■■■ 5.6
LEMD3-203ENST00000541171 BICRAQ9NZM4 1560 aa49.75■■■■■ 5.56
LEMD3-203ENST00000541171 ZCCHC6Q5VYS8 1495 aaKnown RBP49.69■■■■■ 5.55
LEMD3-203ENST00000541171 DCAF1Q9Y4B6 1507 aa49.48■■■■■ 5.51
LEMD3-203ENST00000541171 SCRIBQ14160 1630 aa49.12■■■■■ 5.45
LEMD3-203ENST00000541171 SHROOM4Q9ULL8 1493 aa48.99■■■■■ 5.43
LEMD3-203ENST00000541171 CC2D2AQ9P2K1 1620 aa48.68■■■■■ 5.38
LEMD3-203ENST00000541171 CECR2Q9BXF3 1484 aa48.59■■■■■ 5.37
LEMD3-203ENST00000541171 EIF4G1Q04637 1599 aaKnown RBP48.56■■■■■ 5.36
LEMD3-203ENST00000541171 NCAPD3P42695 1498 aa47■■■■■ 5.11
LEMD3-203ENST00000541171 ATAD2BQ9ULI0 1458 aa46.89■■■■■ 5.1
LEMD3-203ENST00000541171 SMARCA4P51532 1647 aa46.79■■■■■ 5.08
LEMD3-203ENST00000541171 SMARCA2P51531 1590 aa46.71■■■■■ 5.07
LEMD3-203ENST00000541171 HMGXB3Q12766 1538 aa46.6■■■■■ 5.05
LEMD3-203ENST00000541171 ERCC6Q03468 1493 aa46.6■■■■■ 5.05
LEMD3-203ENST00000541171 BAZ1AQ9NRL2 1556 aaPredicted RBP46.56■■■■■ 5.04
LEMD3-203ENST00000541171 DNAJC5Q9H3Z4 198 aa46.52■■■■■ 5.04
LEMD3-203ENST00000541171 BAZ1BQ9UIG0 1483 aaKnown RBP46.44■■■■■ 5.03
LEMD3-203ENST00000541171 CUX2O14529 1486 aa46.43■■■■■ 5.02
LEMD3-203ENST00000541171 NESP48681 1621 aa46.35■■■■■ 5.01
LEMD3-203ENST00000541171 PEG3Q9GZU2 1588 aa46.27■■■■■ 5
LEMD3-203ENST00000541171 MROH2BQ7Z745 1585 aa46.26■■■■■ 5
LEMD3-203ENST00000541171 LAMC3Q9Y6N6 1575 aa45.92■■■■■ 4.94
LEMD3-203ENST00000541171 THOC2Q8NI27 1593 aaKnown RBP45.77■■■■■ 4.92
LEMD3-203ENST00000541171 PDS5BQ9NTI5 1447 aa45.73■■■■■ 4.91
LEMD3-203ENST00000541171 WIZO95785 1651 aa45.7■■■■■ 4.91
LEMD3-203ENST00000541171 KIF21AQ7Z4S6 1674 aa45.66■■■■■ 4.9
LEMD3-203ENST00000541171 CADPSQ9ULU8 1353 aa45.62■■■■■ 4.89
LEMD3-203ENST00000541171 MRC2Q9UBG0 1479 aa45.31■■■■■ 4.84
LEMD3-203ENST00000541171 RSF1Q96T23 1441 aaPredicted RBP45.31■■■■■ 4.84
LEMD3-203ENST00000541171 WDR62O43379 1518 aa45.16■■■■■ 4.82
LEMD3-203ENST00000541171 CEP164Q9UPV0 1460 aa45.14■■■■■ 4.82
LEMD3-203ENST00000541171 FANCD2Q9BXW9 1451 aa45.1■■■■■ 4.81
LEMD3-203ENST00000541171 TOP2AP11388 1531 aaKnown RBP45.09■■■■■ 4.81
LEMD3-203ENST00000541171 CFTRP13569 1480 aa45.05■■■■■ 4.8
LEMD3-203ENST00000541171 URB2Q14146 1524 aaKnown RBP44.72■■■■■ 4.75
LEMD3-203ENST00000541171 CCDC88BA6NC98 1476 aa44.65■■■■■ 4.74
LEMD3-203ENST00000541171 TRIM41Q8WV44 630 aa44.59■■■■■ 4.73
LEMD3-203ENST00000541171 PRDM2Q13029 1718 aa44.49■■■■■ 4.71
LEMD3-203ENST00000541171 OSCARQ8IYS5 282 aa44.42■■■■■ 4.7
LEMD3-203ENST00000541171 IFT140Q96RY7 1462 aa44.23■■■■■ 4.67
LEMD3-203ENST00000541171 TOPBP1Q92547 1522 aa44.23■■■■■ 4.67
LEMD3-203ENST00000541171 ZNF608Q9ULD9 1512 aaPredicted RBP44.2■■■■■ 4.67
LEMD3-203ENST00000541171 ABCC8Q09428 1581 aa44.09■■■■■ 4.65
LEMD3-203ENST00000541171 DNMBPQ6XZF7 1577 aa44.03■■■■■ 4.64
LEMD3-203ENST00000541171 EIF4G3O43432 1585 aaKnown RBP43.88■■■■■ 4.62
LEMD3-203ENST00000541171 AQRO60306 1485 aaKnown RBP eCLIP43.83■■■■■ 4.61
LEMD3-203ENST00000541171 TARBP1Q13395 1621 aaKnown RBP43.79■■■■■ 4.6
LEMD3-203ENST00000541171 POLA1P09884 1462 aaPredicted RBP43.77■■■■■ 4.6
LEMD3-203ENST00000541171 RIMBP3CA6NJZ7 1639 aa43.76■■■■■ 4.6
LEMD3-203ENST00000541171 RIMBP3BA6NNM3 1639 aa43.76■■■■■ 4.6
LEMD3-203ENST00000541171 RIMBP3Q9UFD9 1639 aa43.76■■■■■ 4.6
LEMD3-203ENST00000541171 RAD54L2Q9Y4B4 1467 aa43.68■■■■■ 4.58
LEMD3-203ENST00000541171 FBLN2P98095 1184 aa43.65■■■■■ 4.58
LEMD3-203ENST00000541171 SOGA1O94964 1423 aa43.64■■■■■ 4.58
LEMD3-203ENST00000541171 ARHGEF11O15085 1522 aa43.63■■■■■ 4.57
LEMD3-203ENST00000541171 TDRD9Q8NDG6 1382 aaKnown RBP43.58■■■■■ 4.57
LEMD3-203ENST00000541171 CHD1O14646 1710 aa43.56■■■■■ 4.56
LEMD3-203ENST00000541171 FGD5Q6ZNL6 1462 aa43.52■■■■■ 4.56
LEMD3-203ENST00000541171 SUPT5HO00267 1087 aaKnown RBP43.47■■■■■ 4.55
LEMD3-203ENST00000541171 CUX1P39880 1505 aa43.46■■■■■ 4.55
LEMD3-203ENST00000541171 CYB5RLQ6IPT4 315 aa43.44■■■■■ 4.54
LEMD3-203ENST00000541171 SNAPC4Q5SXM2 1469 aa43.35■■■■■ 4.53
LEMD3-203ENST00000541171 WDR97A6NE52 1622 aa43.28■■■■■ 4.52
LEMD3-203ENST00000541171 CHMP7Q8WUX9 453 aaPredicted RBP43.27■■■■■ 4.52
LEMD3-203ENST00000541171 GRIN2BQ13224 1484 aa43.21■■■■■ 4.51
LEMD3-203ENST00000541171 ARAP1Q96P48 1450 aa43.2■■■■■ 4.51
LEMD3-203ENST00000541171 MAGI1Q96QZ7 1491 aaPredicted RBP43.18■■■■■ 4.5
LEMD3-203ENST00000541171 GAPVD1Q14C86 1478 aa43.07■■■■■ 4.49
LEMD3-203ENST00000541171 SYNJ1O43426 1573 aa43.06■■■■■ 4.48
LEMD3-203ENST00000541171 CLASP1Q7Z460 1538 aa43.06■■■■■ 4.48
LEMD3-203ENST00000541171 SYNJ2O15056 1496 aa43.06■■■■■ 4.48
LEMD3-203ENST00000541171 TRHP20396 242 aaPredicted RBP43■■■■■ 4.47
LEMD3-203ENST00000541171 ABCA10Q8WWZ4 1543 aa42.98■■■■■ 4.47
LEMD3-203ENST00000541171 PBRM1Q86U86 1689 aa42.98■■■■■ 4.47
LEMD3-203ENST00000541171 ABCA5Q8WWZ7 1642 aa42.89■■■■■ 4.46
LEMD3-203ENST00000541171 WRNQ14191 1432 aaPredicted RBP eCLIP42.85■■■■■ 4.452e-6■■■■■ 52.2
LEMD3-203ENST00000541171 TOP2BQ02880 1626 aa42.71■■■■■ 4.43
LEMD3-203ENST00000541171 BIVM-ERCC5R4GMW8 1640 aa42.7■■■■■ 4.43
LEMD3-203ENST00000541171 GRIN2AQ12879 1464 aa42.65■■■■■ 4.42
LEMD3-203ENST00000541171 ADAMTS12P58397 1594 aa42.59■■■■■ 4.41
LEMD3-203ENST00000541171 FHAD1B1AJZ9 1412 aa42.52■■■■■ 4.4
LEMD3-203ENST00000541171 CEP170Q5SW79 1584 aa42.48■■■■■ 4.39
LEMD3-203ENST00000541171 NUP160Q12769 1436 aa42.48■■■■■ 4.39
LEMD3-203ENST00000541171 ERCC6L2Q5T890 1561 aa42.46■■■■■ 4.39
LEMD3-203ENST00000541171 ERICH3Q5RHP9 1530 aa42.42■■■■■ 4.38
LEMD3-203ENST00000541171 SHROOM2Q13796 1616 aa42.24■■■■■ 4.35
LEMD3-203ENST00000541171 PRG4Q92954 1404 aaPredicted RBP42.15■■■■■ 4.34
LEMD3-203ENST00000541171 JPH4Q96JJ6 628 aa42.15■■■■■ 4.34
LEMD3-203ENST00000541171 RUSC2Q8N2Y8 1516 aa41.97■■■■■ 4.31
LEMD3-203ENST00000541171 IGF1RP08069 1367 aa41.97■■■■■ 4.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms