RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 NISCHQ9Y2I1 1504 aa32.22■■■□□ 2.75
LTBR-208ENST00000541005 CCDC180Q9P1Z9 1646 aa28.81■■■□□ 2.2
LTBR-208ENST00000541005 ABCC9O60706 1549 aa28.02■■■□□ 2.08
LTBR-208ENST00000541005 RB1CC1Q8TDY2 1594 aa27.05■■□□□ 1.92
LTBR-208ENST00000541005 NACADO15069 1562 aa27.02■■□□□ 1.92
LTBR-208ENST00000541005 MYO15BQ96JP2 1530 aa26.89■■□□□ 1.89
LTBR-208ENST00000541005 ZCCHC6Q5VYS8 1495 aaKnown RBP26.86■■□□□ 1.89
LTBR-208ENST00000541005 DCAF1Q9Y4B6 1507 aa26.74■■□□□ 1.87
LTBR-208ENST00000541005 DCAF8L2P0C7V8 631 aa26.66■■□□□ 1.86
LTBR-208ENST00000541005 UNC13AQ9UPW8 1703 aa26.56■■□□□ 1.84
LTBR-208ENST00000541005 BICRAQ9NZM4 1560 aa26.25■■□□□ 1.79
LTBR-208ENST00000541005 SCRIBQ14160 1630 aa26.14■■□□□ 1.78
LTBR-208ENST00000541005 PABPN1Q86U42 306 aaKnown RBP eCLIP26.08■■□□□ 1.77
LTBR-208ENST00000541005 SHROOM4Q9ULL8 1493 aa26.03■■□□□ 1.76
LTBR-208ENST00000541005 DNAJC5BQ9UF47 199 aa25.72■■□□□ 1.71
LTBR-208ENST00000541005 EIF4G1Q04637 1599 aaKnown RBP25.54■■□□□ 1.68
LTBR-208ENST00000541005 CC2D2AQ9P2K1 1620 aa25.45■■□□□ 1.66
LTBR-208ENST00000541005 CECR2Q9BXF3 1484 aa25.22■■□□□ 1.63
LTBR-208ENST00000541005 SMARCA4P51532 1647 aa25.06■■□□□ 1.6
LTBR-208ENST00000541005 BAZ1AQ9NRL2 1556 aaPredicted RBP25■■□□□ 1.59
LTBR-208ENST00000541005 SMARCA2P51531 1590 aa24.89■■□□□ 1.58
LTBR-208ENST00000541005 NCAPD3P42695 1498 aa24.88■■□□□ 1.57
LTBR-208ENST00000541005 ATAD2BQ9ULI0 1458 aa24.87■■□□□ 1.57
LTBR-208ENST00000541005 PEG3Q9GZU2 1588 aa24.86■■□□□ 1.57
LTBR-208ENST00000541005 HMGXB3Q12766 1538 aa24.82■■□□□ 1.56
LTBR-208ENST00000541005 MROH2BQ7Z745 1585 aa24.8■■□□□ 1.56
LTBR-208ENST00000541005 BAZ1BQ9UIG0 1483 aaKnown RBP24.65■■□□□ 1.54
LTBR-208ENST00000541005 WIZO95785 1651 aa24.57■■□□□ 1.52
LTBR-208ENST00000541005 RSF1Q96T23 1441 aaPredicted RBP24.47■■□□□ 1.51
LTBR-208ENST00000541005 TOP2AP11388 1531 aaKnown RBP24.32■■□□□ 1.48
LTBR-208ENST00000541005 LAMC3Q9Y6N6 1575 aa24.29■■□□□ 1.48
LTBR-208ENST00000541005 NESP48681 1621 aa24.25■■□□□ 1.47
LTBR-208ENST00000541005 ERCC6Q03468 1493 aa24.17■■□□□ 1.46
LTBR-208ENST00000541005 CADPSQ9ULU8 1353 aa24.1■■□□□ 1.45
LTBR-208ENST00000541005 KIF21AQ7Z4S6 1674 aa24.1■■□□□ 1.45
LTBR-208ENST00000541005 PDS5BQ9NTI5 1447 aa24.03■■□□□ 1.44
LTBR-208ENST00000541005 THOC2Q8NI27 1593 aaKnown RBP24.03■■□□□ 1.44
LTBR-208ENST00000541005 CUX2O14529 1486 aa24.02■■□□□ 1.44
LTBR-208ENST00000541005 PRDM2Q13029 1718 aa24.01■■□□□ 1.43
LTBR-208ENST00000541005 CFTRP13569 1480 aa24■■□□□ 1.43
LTBR-208ENST00000541005 CCDC88BA6NC98 1476 aa23.96■■□□□ 1.43
LTBR-208ENST00000541005 FANCD2Q9BXW9 1451 aa23.85■■□□□ 1.41
LTBR-208ENST00000541005 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
LTBR-208ENST00000541005 MRC2Q9UBG0 1479 aa23.83■■□□□ 1.41
LTBR-208ENST00000541005 WDR62O43379 1518 aa23.81■■□□□ 1.4
LTBR-208ENST00000541005 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.37
LTBR-208ENST00000541005 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
LTBR-208ENST00000541005 ABCC8Q09428 1581 aa23.49■■□□□ 1.35
LTBR-208ENST00000541005 DNMBPQ6XZF7 1577 aa23.49■■□□□ 1.35
LTBR-208ENST00000541005 TOPBP1Q92547 1522 aa23.49■■□□□ 1.35
LTBR-208ENST00000541005 IFT140Q96RY7 1462 aa23.35■■□□□ 1.33
LTBR-208ENST00000541005 TARBP1Q13395 1621 aaKnown RBP23.3■■□□□ 1.32
LTBR-208ENST00000541005 CUX1P39880 1505 aa23.29■■□□□ 1.32
LTBR-208ENST00000541005 POLA1P09884 1462 aaPredicted RBP23.28■■□□□ 1.32
LTBR-208ENST00000541005 DNAJC5Q9H3Z4 198 aa23.24■■□□□ 1.31
LTBR-208ENST00000541005 ZNF608Q9ULD9 1512 aaPredicted RBP23.22■■□□□ 1.31
LTBR-208ENST00000541005 EIF4G3O43432 1585 aaKnown RBP23.21■■□□□ 1.31
LTBR-208ENST00000541005 FGD5Q6ZNL6 1462 aa23.2■■□□□ 1.3
LTBR-208ENST00000541005 WDR97A6NE52 1622 aa23.16■■□□□ 1.3
LTBR-208ENST00000541005 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
LTBR-208ENST00000541005 TOP2BQ02880 1626 aa23.11■■□□□ 1.29
LTBR-208ENST00000541005 RAD54L2Q9Y4B4 1467 aa23.11■■□□□ 1.29
LTBR-208ENST00000541005 SOGA1O94964 1423 aa23.11■■□□□ 1.29
LTBR-208ENST00000541005 SYNJ1O43426 1573 aa23.08■■□□□ 1.29
LTBR-208ENST00000541005 WRNQ14191 1432 aaPredicted RBP eCLIP23.08■■□□□ 1.28
LTBR-208ENST00000541005 AQRO60306 1485 aaKnown RBP eCLIP23.04■■□□□ 1.281e-6■■■■□ 22.1
LTBR-208ENST00000541005 ABCA10Q8WWZ4 1543 aa23.01■■□□□ 1.27
LTBR-208ENST00000541005 ABCA5Q8WWZ7 1642 aa22.98■■□□□ 1.27
LTBR-208ENST00000541005 PBRM1Q86U86 1689 aa22.97■■□□□ 1.27
LTBR-208ENST00000541005 CHD1O14646 1710 aa22.97■■□□□ 1.27
LTBR-208ENST00000541005 TDRD9Q8NDG6 1382 aaKnown RBP22.96■■□□□ 1.27
LTBR-208ENST00000541005 GRIN2BQ13224 1484 aa22.91■■□□□ 1.26
LTBR-208ENST00000541005 GAPVD1Q14C86 1478 aa22.89■■□□□ 1.25
LTBR-208ENST00000541005 MAGI1Q96QZ7 1491 aaPredicted RBP22.89■■□□□ 1.25
LTBR-208ENST00000541005 OSCARQ8IYS5 282 aa22.88■■□□□ 1.25
LTBR-208ENST00000541005 SNAPC4Q5SXM2 1469 aa22.87■■□□□ 1.25
LTBR-208ENST00000541005 SYNJ2O15056 1496 aa22.78■■□□□ 1.24
LTBR-208ENST00000541005 ERICH3Q5RHP9 1530 aa22.75■■□□□ 1.23
LTBR-208ENST00000541005 ADAMTS12P58397 1594 aa22.75■■□□□ 1.23
LTBR-208ENST00000541005 CLASP1Q7Z460 1538 aa22.68■■□□□ 1.22
LTBR-208ENST00000541005 FBLN2P98095 1184 aa22.66■■□□□ 1.22
LTBR-208ENST00000541005 RIMBP3CA6NJZ7 1639 aa22.66■■□□□ 1.22
LTBR-208ENST00000541005 RIMBP3BA6NNM3 1639 aa22.66■■□□□ 1.22
LTBR-208ENST00000541005 RIMBP3Q9UFD9 1639 aa22.66■■□□□ 1.22
LTBR-208ENST00000541005 CHMP7Q8WUX9 453 aaPredicted RBP22.64■■□□□ 1.21
LTBR-208ENST00000541005 GRIN2AQ12879 1464 aa22.62■■□□□ 1.21
LTBR-208ENST00000541005 FHAD1B1AJZ9 1412 aa22.62■■□□□ 1.21
LTBR-208ENST00000541005 ARHGEF11O15085 1522 aa22.62■■□□□ 1.21
LTBR-208ENST00000541005 KIF27Q86VH2 1401 aa22.59■■□□□ 1.21
LTBR-208ENST00000541005 CUL7Q14999 1698 aa22.57■■□□□ 1.2
LTBR-208ENST00000541005 NUP160Q12769 1436 aa22.55■■□□□ 1.2
LTBR-208ENST00000541005 CEP170Q5SW79 1584 aa22.54■■□□□ 1.2
LTBR-208ENST00000541005 IGF1RP08069 1367 aa22.48■■□□□ 1.19
LTBR-208ENST00000541005 SHROOM2Q13796 1616 aa22.46■■□□□ 1.19
LTBR-208ENST00000541005 ARAP1Q96P48 1450 aa22.43■■□□□ 1.18
LTBR-208ENST00000541005 RUSC2Q8N2Y8 1516 aa22.42■■□□□ 1.18
LTBR-208ENST00000541005 TRIM41Q8WV44 630 aa22.36■■□□□ 1.17
LTBR-208ENST00000541005 CARMIL1Q5VZK9 1371 aa22.34■■□□□ 1.17
LTBR-208ENST00000541005 ERCC6L2Q5T890 1561 aa22.3■■□□□ 1.16
LTBR-208ENST00000541005 KIAA0586Q9BVV6 1533 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms