RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 NISCHQ9Y2I1 1504 aa35.06■■■■□ 3.2
USP28-209ENST00000540925 CCDC180Q9P1Z9 1646 aa31.25■■■□□ 2.59
USP28-209ENST00000540925 ABCC9O60706 1549 aa30.66■■■□□ 2.5
USP28-209ENST00000540925 RB1CC1Q8TDY2 1594 aa29.45■■■□□ 2.31
USP28-209ENST00000540925 NACADO15069 1562 aa29.41■■■□□ 2.3
USP28-209ENST00000540925 MYO15BQ96JP2 1530 aa29.25■■■□□ 2.27
USP28-209ENST00000540925 ZCCHC6Q5VYS8 1495 aaKnown RBP29.19■■■□□ 2.26
USP28-209ENST00000540925 DCAF8L2P0C7V8 631 aa29.14■■■□□ 2.26
USP28-209ENST00000540925 DCAF1Q9Y4B6 1507 aa29.06■■■□□ 2.24
USP28-209ENST00000540925 UNC13AQ9UPW8 1703 aa28.82■■■□□ 2.2
USP28-209ENST00000540925 DNAJC5BQ9UF47 199 aa28.81■■■□□ 2.2
USP28-209ENST00000540925 BICRAQ9NZM4 1560 aa28.65■■■□□ 2.18
USP28-209ENST00000540925 PABPN1Q86U42 306 aaKnown RBP eCLIP28.6■■■□□ 2.17
USP28-209ENST00000540925 SCRIBQ14160 1630 aa28.43■■■□□ 2.14
USP28-209ENST00000540925 SHROOM4Q9ULL8 1493 aa28.34■■■□□ 2.13
USP28-209ENST00000540925 EIF4G1Q04637 1599 aaKnown RBP27.86■■■□□ 2.05
USP28-209ENST00000540925 CC2D2AQ9P2K1 1620 aa27.78■■■□□ 2.04
USP28-209ENST00000540925 CECR2Q9BXF3 1484 aa27.59■■■□□ 2.01
USP28-209ENST00000540925 SMARCA4P51532 1647 aa27.23■■□□□ 1.95
USP28-209ENST00000540925 NCAPD3P42695 1498 aa27.17■■□□□ 1.94
USP28-209ENST00000540925 BAZ1AQ9NRL2 1556 aaPredicted RBP27.16■■□□□ 1.94
USP28-209ENST00000540925 ATAD2BQ9ULI0 1458 aa27.14■■□□□ 1.94
USP28-209ENST00000540925 SMARCA2P51531 1590 aa27.07■■□□□ 1.92
USP28-209ENST00000540925 PEG3Q9GZU2 1588 aa27.03■■□□□ 1.92
USP28-209ENST00000540925 MROH2BQ7Z745 1585 aa27.01■■□□□ 1.92
USP28-209ENST00000540925 HMGXB3Q12766 1538 aa27.01■■□□□ 1.91
USP28-209ENST00000540925 DNAJC5Q9H3Z4 198 aa26.85■■□□□ 1.89
USP28-209ENST00000540925 BAZ1BQ9UIG0 1483 aaKnown RBP26.85■■□□□ 1.89
USP28-209ENST00000540925 WIZO95785 1651 aa26.68■■□□□ 1.86
USP28-209ENST00000540925 RSF1Q96T23 1441 aaPredicted RBP26.65■■□□□ 1.86
USP28-209ENST00000540925 NESP48681 1621 aa26.52■■□□□ 1.84
USP28-209ENST00000540925 LAMC3Q9Y6N6 1575 aa26.44■■□□□ 1.82
USP28-209ENST00000540925 TOP2AP11388 1531 aaKnown RBP26.41■■□□□ 1.82
USP28-209ENST00000540925 ERCC6Q03468 1493 aa26.4■■□□□ 1.82
USP28-209ENST00000540925 CADPSQ9ULU8 1353 aa26.33■■□□□ 1.8
USP28-209ENST00000540925 CUX2O14529 1486 aa26.27■■□□□ 1.8
USP28-209ENST00000540925 PDS5BQ9NTI5 1447 aa26.23■■□□□ 1.79
USP28-209ENST00000540925 THOC2Q8NI27 1593 aaKnown RBP26.2■■□□□ 1.79
USP28-209ENST00000540925 KIF21AQ7Z4S6 1674 aa26.19■■□□□ 1.78
USP28-209ENST00000540925 CFTRP13569 1480 aa26.17■■□□□ 1.78
USP28-209ENST00000540925 CCDC88BA6NC98 1476 aa26.1■■□□□ 1.77
USP28-209ENST00000540925 FANCD2Q9BXW9 1451 aa26.01■■□□□ 1.75
USP28-209ENST00000540925 MRC2Q9UBG0 1479 aa26■■□□□ 1.75
USP28-209ENST00000540925 CEP164Q9UPV0 1460 aa25.98■■□□□ 1.75
USP28-209ENST00000540925 WDR62O43379 1518 aa25.96■■□□□ 1.75
USP28-209ENST00000540925 PRDM2Q13029 1718 aa25.92■■□□□ 1.74
USP28-209ENST00000540925 URB2Q14146 1524 aaKnown RBP25.8■■□□□ 1.72
USP28-209ENST00000540925 SUPT5HO00267 1087 aaKnown RBP25.68■■□□□ 1.7
USP28-209ENST00000540925 TOPBP1Q92547 1522 aa25.59■■□□□ 1.69
USP28-209ENST00000540925 ABCC8Q09428 1581 aa25.56■■□□□ 1.68
USP28-209ENST00000540925 DNMBPQ6XZF7 1577 aa25.55■■□□□ 1.68
USP28-209ENST00000540925 IFT140Q96RY7 1462 aa25.46■■□□□ 1.67
USP28-209ENST00000540925 TRIM41Q8WV44 630 aa25.38■■□□□ 1.65
USP28-209ENST00000540925 ZNF608Q9ULD9 1512 aaPredicted RBP25.37■■□□□ 1.65
USP28-209ENST00000540925 POLA1P09884 1462 aaPredicted RBP25.37■■□□□ 1.65
USP28-209ENST00000540925 TARBP1Q13395 1621 aaKnown RBP25.36■■□□□ 1.65
USP28-209ENST00000540925 CUX1P39880 1505 aa25.36■■□□□ 1.65
USP28-209ENST00000540925 FGD5Q6ZNL6 1462 aa25.26■■□□□ 1.63
USP28-209ENST00000540925 EIF4G3O43432 1585 aaKnown RBP25.26■■□□□ 1.63
USP28-209ENST00000540925 RAD54L2Q9Y4B4 1467 aa25.24■■□□□ 1.63
USP28-209ENST00000540925 SOGA1O94964 1423 aa25.21■■□□□ 1.63
USP28-209ENST00000540925 AQRO60306 1485 aaKnown RBP eCLIP25.18■■□□□ 1.62
USP28-209ENST00000540925 WDR97A6NE52 1622 aa25.15■■□□□ 1.62
USP28-209ENST00000540925 TDRD9Q8NDG6 1382 aaKnown RBP25.09■■□□□ 1.61
USP28-209ENST00000540925 TOP2BQ02880 1626 aa25.08■■□□□ 1.61
USP28-209ENST00000540925 BIVM-ERCC5R4GMW8 1640 aa25.08■■□□□ 1.61
USP28-209ENST00000540925 OSCARQ8IYS5 282 aa25.08■■□□□ 1.61
USP28-209ENST00000540925 WRNQ14191 1432 aaPredicted RBP eCLIP25.08■■□□□ 1.61
USP28-209ENST00000540925 SYNJ1O43426 1573 aa25.06■■□□□ 1.6
USP28-209ENST00000540925 ABCA10Q8WWZ4 1543 aa25.04■■□□□ 1.6
USP28-209ENST00000540925 ABCA5Q8WWZ7 1642 aa24.97■■□□□ 1.59
USP28-209ENST00000540925 GRIN2BQ13224 1484 aa24.96■■□□□ 1.59
USP28-209ENST00000540925 SNAPC4Q5SXM2 1469 aa24.95■■□□□ 1.58
USP28-209ENST00000540925 CHD1O14646 1710 aa24.95■■□□□ 1.58
USP28-209ENST00000540925 GAPVD1Q14C86 1478 aa24.94■■□□□ 1.58
USP28-209ENST00000540925 MAGI1Q96QZ7 1491 aaPredicted RBP24.93■■□□□ 1.58
USP28-209ENST00000540925 PBRM1Q86U86 1689 aa24.89■■□□□ 1.58
USP28-209ENST00000540925 SYNJ2O15056 1496 aa24.83■■□□□ 1.57
USP28-209ENST00000540925 FBLN2P98095 1184 aa24.79■■□□□ 1.56
USP28-209ENST00000540925 RIMBP3CA6NJZ7 1639 aa24.75■■□□□ 1.55
USP28-209ENST00000540925 RIMBP3BA6NNM3 1639 aa24.75■■□□□ 1.55
USP28-209ENST00000540925 RIMBP3Q9UFD9 1639 aa24.75■■□□□ 1.55
USP28-209ENST00000540925 CHMP7Q8WUX9 453 aaPredicted RBP24.75■■□□□ 1.55
USP28-209ENST00000540925 CLASP1Q7Z460 1538 aa24.75■■□□□ 1.55
USP28-209ENST00000540925 ARHGEF11O15085 1522 aa24.74■■□□□ 1.55
USP28-209ENST00000540925 ERICH3Q5RHP9 1530 aa24.73■■□□□ 1.55
USP28-209ENST00000540925 ADAMTS12P58397 1594 aa24.72■■□□□ 1.55
USP28-209ENST00000540925 GRIN2AQ12879 1464 aa24.65■■□□□ 1.54
USP28-209ENST00000540925 FHAD1B1AJZ9 1412 aa24.65■■□□□ 1.54
USP28-209ENST00000540925 NUP160Q12769 1436 aa24.6■■□□□ 1.53
USP28-209ENST00000540925 CEP170Q5SW79 1584 aa24.55■■□□□ 1.52
USP28-209ENST00000540925 KIF27Q86VH2 1401 aa24.55■■□□□ 1.52
USP28-209ENST00000540925 ARAP1Q96P48 1450 aa24.55■■□□□ 1.52
USP28-209ENST00000540925 IGF1RP08069 1367 aa24.54■■□□□ 1.52
USP28-209ENST00000540925 CUL7Q14999 1698 aa24.45■■□□□ 1.5
USP28-209ENST00000540925 SHROOM2Q13796 1616 aa24.43■■□□□ 1.5
USP28-209ENST00000540925 CYB5RLQ6IPT4 315 aa24.43■■□□□ 1.5
USP28-209ENST00000540925 ERCC6L2Q5T890 1561 aa24.37■■□□□ 1.49
USP28-209ENST00000540925 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
USP28-209ENST00000540925 CARMIL1Q5VZK9 1371 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms