RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 NISCHQ9Y2I1 1504 aa18.8■□□□□ 0.6
YBX3-209ENST00000540747 ABCC9O60706 1549 aa17.02■□□□□ 0.32
YBX3-209ENST00000540747 CCDC180Q9P1Z9 1646 aa16.92■□□□□ 0.3
YBX3-209ENST00000540747 RB1CC1Q8TDY2 1594 aa16.16■□□□□ 0.18
YBX3-209ENST00000540747 DNAJC5BQ9UF47 199 aa16.15■□□□□ 0.18
YBX3-209ENST00000540747 NACADO15069 1562 aa16.04■□□□□ 0.16
YBX3-209ENST00000540747 MYO15BQ96JP2 1530 aa15.84■□□□□ 0.13
YBX3-209ENST00000540747 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
YBX3-209ENST00000540747 UNC13AQ9UPW8 1703 aa15.79■□□□□ 0.12
YBX3-209ENST00000540747 BICRAQ9NZM4 1560 aa15.76■□□□□ 0.11
YBX3-209ENST00000540747 DCAF8L2P0C7V8 631 aa15.73■□□□□ 0.11
YBX3-209ENST00000540747 ZCCHC6Q5VYS8 1495 aaKnown RBP15.58■□□□□ 0.08
YBX3-209ENST00000540747 DCAF1Q9Y4B6 1507 aa15.57■□□□□ 0.08
YBX3-209ENST00000540747 SHROOM4Q9ULL8 1493 aa15.55■□□□□ 0.08
YBX3-209ENST00000540747 CC2D2AQ9P2K1 1620 aa15.39■□□□□ 0.05
YBX3-209ENST00000540747 CECR2Q9BXF3 1484 aa15.37■□□□□ 0.05
YBX3-209ENST00000540747 SCRIBQ14160 1630 aa15.36■□□□□ 0.05
YBX3-209ENST00000540747 EIF4G1Q04637 1599 aaKnown RBP15.34■□□□□ 0.05
YBX3-209ENST00000540747 DNAJC5Q9H3Z4 198 aa14.92□□□□□ -0.02
YBX3-209ENST00000540747 NCAPD3P42695 1498 aa14.83□□□□□ -0.03
YBX3-209ENST00000540747 CUX2O14529 1486 aa14.77□□□□□ -0.04
YBX3-209ENST00000540747 ATAD2BQ9ULI0 1458 aa14.76□□□□□ -0.05
YBX3-209ENST00000540747 HMGXB3Q12766 1538 aa14.71□□□□□ -0.06
YBX3-209ENST00000540747 SMARCA4P51532 1647 aa14.68□□□□□ -0.06
YBX3-209ENST00000540747 SMARCA2P51531 1590 aa14.68□□□□□ -0.06
YBX3-209ENST00000540747 ERCC6Q03468 1493 aa14.67□□□□□ -0.06
YBX3-209ENST00000540747 NESP48681 1621 aa14.6□□□□□ -0.07
YBX3-209ENST00000540747 PEG3Q9GZU2 1588 aa14.6□□□□□ -0.07
YBX3-209ENST00000540747 BAZ1AQ9NRL2 1556 aaPredicted RBP14.58□□□□□ -0.08
YBX3-209ENST00000540747 BAZ1BQ9UIG0 1483 aaKnown RBP14.56□□□□□ -0.08
YBX3-209ENST00000540747 THOC2Q8NI27 1593 aaKnown RBP14.52□□□□□ -0.08
YBX3-209ENST00000540747 LAMC3Q9Y6N6 1575 aa14.48□□□□□ -0.09
YBX3-209ENST00000540747 MROH2BQ7Z745 1585 aa14.47□□□□□ -0.09
YBX3-209ENST00000540747 PDS5BQ9NTI5 1447 aa14.39□□□□□ -0.11
YBX3-209ENST00000540747 KIF21AQ7Z4S6 1674 aa14.39□□□□□ -0.11
YBX3-209ENST00000540747 CADPSQ9ULU8 1353 aa14.34□□□□□ -0.11
YBX3-209ENST00000540747 MRC2Q9UBG0 1479 aa14.29□□□□□ -0.12
YBX3-209ENST00000540747 WDR62O43379 1518 aa14.29□□□□□ -0.12
YBX3-209ENST00000540747 WIZO95785 1651 aa14.26□□□□□ -0.13
YBX3-209ENST00000540747 CFTRP13569 1480 aa14.18□□□□□ -0.14
YBX3-209ENST00000540747 CEP164Q9UPV0 1460 aa14.18□□□□□ -0.14
YBX3-209ENST00000540747 FANCD2Q9BXW9 1451 aa14.17□□□□□ -0.14
YBX3-209ENST00000540747 RSF1Q96T23 1441 aaPredicted RBP14.14□□□□□ -0.15
YBX3-209ENST00000540747 TOP2AP11388 1531 aaKnown RBP14.1□□□□□ -0.15
YBX3-209ENST00000540747 URB2Q14146 1524 aaKnown RBP14.1□□□□□ -0.15
YBX3-209ENST00000540747 TRIM41Q8WV44 630 aa14.09□□□□□ -0.15
YBX3-209ENST00000540747 OSCARQ8IYS5 282 aa14□□□□□ -0.17
YBX3-209ENST00000540747 PRDM2Q13029 1718 aa13.95□□□□□ -0.18
YBX3-209ENST00000540747 CCDC88BA6NC98 1476 aa13.93□□□□□ -0.18
YBX3-209ENST00000540747 ZNF608Q9ULD9 1512 aaPredicted RBP13.93□□□□□ -0.18
YBX3-209ENST00000540747 IFT140Q96RY7 1462 aa13.93□□□□□ -0.18
YBX3-209ENST00000540747 TOPBP1Q92547 1522 aa13.9□□□□□ -0.19
YBX3-209ENST00000540747 RIMBP3CA6NJZ7 1639 aa13.88□□□□□ -0.19
YBX3-209ENST00000540747 RIMBP3BA6NNM3 1639 aa13.88□□□□□ -0.19
YBX3-209ENST00000540747 RIMBP3Q9UFD9 1639 aa13.88□□□□□ -0.19
YBX3-209ENST00000540747 ARHGEF11O15085 1522 aa13.85□□□□□ -0.19
YBX3-209ENST00000540747 ABCC8Q09428 1581 aa13.83□□□□□ -0.19
YBX3-209ENST00000540747 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.2
YBX3-209ENST00000540747 DNMBPQ6XZF7 1577 aa13.83□□□□□ -0.2
YBX3-209ENST00000540747 TARBP1Q13395 1621 aaKnown RBP13.8□□□□□ -0.2
YBX3-209ENST00000540747 AQRO60306 1485 aaKnown RBP eCLIP13.75□□□□□ -0.218e-6■■■■□ 23.2
YBX3-209ENST00000540747 POLA1P09884 1462 aaPredicted RBP13.75□□□□□ -0.21
YBX3-209ENST00000540747 CHD1O14646 1710 aa13.72□□□□□ -0.21
YBX3-209ENST00000540747 ARAP1Q96P48 1450 aa13.72□□□□□ -0.21
YBX3-209ENST00000540747 RAD54L2Q9Y4B4 1467 aa13.68□□□□□ -0.22
YBX3-209ENST00000540747 CYB5RLQ6IPT4 315 aa13.66□□□□□ -0.22
YBX3-209ENST00000540747 WDR97A6NE52 1622 aa13.65□□□□□ -0.22
YBX3-209ENST00000540747 TDRD9Q8NDG6 1382 aaKnown RBP13.64□□□□□ -0.23
YBX3-209ENST00000540747 CLASP1Q7Z460 1538 aa13.64□□□□□ -0.23
YBX3-209ENST00000540747 SOGA1O94964 1423 aa13.64□□□□□ -0.23
YBX3-209ENST00000540747 FGD5Q6ZNL6 1462 aa13.62□□□□□ -0.23
YBX3-209ENST00000540747 SNAPC4Q5SXM2 1469 aa13.61□□□□□ -0.23
YBX3-209ENST00000540747 CUX1P39880 1505 aa13.61□□□□□ -0.23
YBX3-209ENST00000540747 MAGI1Q96QZ7 1491 aaPredicted RBP13.6□□□□□ -0.23
YBX3-209ENST00000540747 FBLN2P98095 1184 aa13.59□□□□□ -0.23
YBX3-209ENST00000540747 GRIN2BQ13224 1484 aa13.56□□□□□ -0.24
YBX3-209ENST00000540747 SYNJ2O15056 1496 aa13.55□□□□□ -0.24
YBX3-209ENST00000540747 SYNJ1O43426 1573 aa13.54□□□□□ -0.24
YBX3-209ENST00000540747 TRHP20396 242 aaPredicted RBP13.5□□□□□ -0.25
YBX3-209ENST00000540747 CHMP7Q8WUX9 453 aaPredicted RBP13.5□□□□□ -0.25
YBX3-209ENST00000540747 ABCA10Q8WWZ4 1543 aa13.49□□□□□ -0.25
YBX3-209ENST00000540747 ABCA5Q8WWZ7 1642 aa13.49□□□□□ -0.25
YBX3-209ENST00000540747 GAPVD1Q14C86 1478 aa13.48□□□□□ -0.25
YBX3-209ENST00000540747 PBRM1Q86U86 1689 aa13.47□□□□□ -0.25
YBX3-209ENST00000540747 NUP160Q12769 1436 aa13.4□□□□□ -0.26
YBX3-209ENST00000540747 GRIN2AQ12879 1464 aa13.4□□□□□ -0.26
YBX3-209ENST00000540747 ADAMTS12P58397 1594 aa13.39□□□□□ -0.27
YBX3-209ENST00000540747 ERCC6L2Q5T890 1561 aa13.39□□□□□ -0.27
YBX3-209ENST00000540747 WRNQ14191 1432 aaPredicted RBP eCLIP13.37□□□□□ -0.27
YBX3-209ENST00000540747 CEP170Q5SW79 1584 aa13.37□□□□□ -0.27
YBX3-209ENST00000540747 SHROOM2Q13796 1616 aa13.35□□□□□ -0.27
YBX3-209ENST00000540747 TOP2BQ02880 1626 aa13.35□□□□□ -0.27
YBX3-209ENST00000540747 BIVM-ERCC5R4GMW8 1640 aa13.35□□□□□ -0.27
YBX3-209ENST00000540747 FHAD1B1AJZ9 1412 aa13.32□□□□□ -0.28
YBX3-209ENST00000540747 ERICH3Q5RHP9 1530 aa13.3□□□□□ -0.28
YBX3-209ENST00000540747 SUPT5HO00267 1087 aaKnown RBP13.24□□□□□ -0.29
YBX3-209ENST00000540747 PRG4Q92954 1404 aaPredicted RBP13.22□□□□□ -0.29
YBX3-209ENST00000540747 KIF13AQ9H1H9 1805 aa13.2□□□□□ -0.3
YBX3-209ENST00000540747 RUSC2Q8N2Y8 1516 aa13.2□□□□□ -0.3
YBX3-209ENST00000540747 AEBP2Q6ZN18 517 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms