RNA–Protein interactions for RNA: ENST00000540740.5

PTPN6-214, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 4

Gene PTPN6, Length 592 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-214ENST00000540740 NISCHQ9Y2I1 1504 aa28.12■■■□□ 2.09
PTPN6-214ENST00000540740 CCDC180Q9P1Z9 1646 aa25.11■■□□□ 1.61
PTPN6-214ENST00000540740 ABCC9O60706 1549 aa24.76■■□□□ 1.55
PTPN6-214ENST00000540740 RB1CC1Q8TDY2 1594 aa23.7■■□□□ 1.38
PTPN6-214ENST00000540740 NACADO15069 1562 aa23.61■■□□□ 1.37
PTPN6-214ENST00000540740 DCAF8L2P0C7V8 631 aa23.58■■□□□ 1.37
PTPN6-214ENST00000540740 ZCCHC6Q5VYS8 1495 aaKnown RBP23.4■■□□□ 1.34
PTPN6-214ENST00000540740 MYO15BQ96JP2 1530 aa23.36■■□□□ 1.33
PTPN6-214ENST00000540740 UNC13AQ9UPW8 1703 aa23.24■■□□□ 1.31
PTPN6-214ENST00000540740 DCAF1Q9Y4B6 1507 aa23.21■■□□□ 1.31
PTPN6-214ENST00000540740 PABPN1Q86U42 306 aaKnown RBP eCLIP23.07■■□□□ 1.28
PTPN6-214ENST00000540740 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
PTPN6-214ENST00000540740 SCRIBQ14160 1630 aa22.95■■□□□ 1.26
PTPN6-214ENST00000540740 DNAJC5BQ9UF47 199 aa22.83■■□□□ 1.25
PTPN6-214ENST00000540740 SHROOM4Q9ULL8 1493 aa22.68■■□□□ 1.22
PTPN6-214ENST00000540740 EIF4G1Q04637 1599 aaKnown RBP22.42■■□□□ 1.18
PTPN6-214ENST00000540740 CC2D2AQ9P2K1 1620 aa22.39■■□□□ 1.17
PTPN6-214ENST00000540740 CECR2Q9BXF3 1484 aa22.24■■□□□ 1.15
PTPN6-214ENST00000540740 SMARCA4P51532 1647 aa21.89■■□□□ 1.09
PTPN6-214ENST00000540740 BAZ1AQ9NRL2 1556 aaPredicted RBP21.81■■□□□ 1.08
PTPN6-214ENST00000540740 ATAD2BQ9ULI0 1458 aa21.77■■□□□ 1.08
PTPN6-214ENST00000540740 NCAPD3P42695 1498 aa21.76■■□□□ 1.07
PTPN6-214ENST00000540740 SMARCA2P51531 1590 aa21.75■■□□□ 1.07
PTPN6-214ENST00000540740 MROH2BQ7Z745 1585 aa21.69■■□□□ 1.06
PTPN6-214ENST00000540740 HMGXB3Q12766 1538 aa21.68■■□□□ 1.06
PTPN6-214ENST00000540740 PEG3Q9GZU2 1588 aa21.63■■□□□ 1.05
PTPN6-214ENST00000540740 BAZ1BQ9UIG0 1483 aaKnown RBP21.61■■□□□ 1.05
PTPN6-214ENST00000540740 WIZO95785 1651 aa21.48■■□□□ 1.03
PTPN6-214ENST00000540740 NESP48681 1621 aa21.37■■□□□ 1.01
PTPN6-214ENST00000540740 ERCC6Q03468 1493 aa21.35■■□□□ 1.01
PTPN6-214ENST00000540740 RSF1Q96T23 1441 aaPredicted RBP21.34■■□□□ 1.01
PTPN6-214ENST00000540740 LAMC3Q9Y6N6 1575 aa21.26■□□□□ 0.99
PTPN6-214ENST00000540740 TOP2AP11388 1531 aaKnown RBP21.21■□□□□ 0.99
PTPN6-214ENST00000540740 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
PTPN6-214ENST00000540740 CUX2O14529 1486 aa21.14■□□□□ 0.98
PTPN6-214ENST00000540740 CADPSQ9ULU8 1353 aa21.12■□□□□ 0.97
PTPN6-214ENST00000540740 THOC2Q8NI27 1593 aaKnown RBP21.1■□□□□ 0.97
PTPN6-214ENST00000540740 PDS5BQ9NTI5 1447 aa21.09■□□□□ 0.97
PTPN6-214ENST00000540740 CFTRP13569 1480 aa20.97■□□□□ 0.95
PTPN6-214ENST00000540740 CCDC88BA6NC98 1476 aa20.94■□□□□ 0.94
PTPN6-214ENST00000540740 FANCD2Q9BXW9 1451 aa20.93■□□□□ 0.94
PTPN6-214ENST00000540740 MRC2Q9UBG0 1479 aa20.93■□□□□ 0.94
PTPN6-214ENST00000540740 CEP164Q9UPV0 1460 aa20.93■□□□□ 0.94
PTPN6-214ENST00000540740 PRDM2Q13029 1718 aa20.89■□□□□ 0.93
PTPN6-214ENST00000540740 WDR62O43379 1518 aa20.87■□□□□ 0.93
PTPN6-214ENST00000540740 URB2Q14146 1524 aaKnown RBP20.73■□□□□ 0.91
PTPN6-214ENST00000540740 SUPT5HO00267 1087 aaKnown RBP20.7■□□□□ 0.9
PTPN6-214ENST00000540740 DNAJC5Q9H3Z4 198 aa20.66■□□□□ 0.9
PTPN6-214ENST00000540740 TOPBP1Q92547 1522 aa20.58■□□□□ 0.88
PTPN6-214ENST00000540740 DNMBPQ6XZF7 1577 aa20.54■□□□□ 0.88
PTPN6-214ENST00000540740 ABCC8Q09428 1581 aa20.51■□□□□ 0.87
PTPN6-214ENST00000540740 IFT140Q96RY7 1462 aa20.46■□□□□ 0.87
PTPN6-214ENST00000540740 ZNF608Q9ULD9 1512 aaPredicted RBP20.43■□□□□ 0.86
PTPN6-214ENST00000540740 POLA1P09884 1462 aaPredicted RBP20.38■□□□□ 0.85
PTPN6-214ENST00000540740 EIF4G3O43432 1585 aaKnown RBP20.38■□□□□ 0.85
PTPN6-214ENST00000540740 TARBP1Q13395 1621 aaKnown RBP20.37■□□□□ 0.85
PTPN6-214ENST00000540740 CUX1P39880 1505 aa20.37■□□□□ 0.85
PTPN6-214ENST00000540740 FGD5Q6ZNL6 1462 aa20.32■□□□□ 0.84
PTPN6-214ENST00000540740 RAD54L2Q9Y4B4 1467 aa20.31■□□□□ 0.84
PTPN6-214ENST00000540740 AQRO60306 1485 aaKnown RBP eCLIP20.27■□□□□ 0.84
PTPN6-214ENST00000540740 SOGA1O94964 1423 aa20.27■□□□□ 0.83
PTPN6-214ENST00000540740 WDR97A6NE52 1622 aa20.2■□□□□ 0.82
PTPN6-214ENST00000540740 TDRD9Q8NDG6 1382 aaKnown RBP20.2■□□□□ 0.82
PTPN6-214ENST00000540740 OSCARQ8IYS5 282 aa20.19■□□□□ 0.82
PTPN6-214ENST00000540740 CHD1O14646 1710 aa20.16■□□□□ 0.82
PTPN6-214ENST00000540740 SYNJ1O43426 1573 aa20.15■□□□□ 0.82
PTPN6-214ENST00000540740 BIVM-ERCC5R4GMW8 1640 aa20.15■□□□□ 0.82
PTPN6-214ENST00000540740 WRNQ14191 1432 aaPredicted RBP eCLIP20.14■□□□□ 0.81
PTPN6-214ENST00000540740 TOP2BQ02880 1626 aa20.13■□□□□ 0.81
PTPN6-214ENST00000540740 SNAPC4Q5SXM2 1469 aa20.11■□□□□ 0.81
PTPN6-214ENST00000540740 PBRM1Q86U86 1689 aa20.1■□□□□ 0.81
PTPN6-214ENST00000540740 ABCA10Q8WWZ4 1543 aa20.08■□□□□ 0.81
PTPN6-214ENST00000540740 ABCA5Q8WWZ7 1642 aa20.07■□□□□ 0.8
PTPN6-214ENST00000540740 FBLN2P98095 1184 aa20.07■□□□□ 0.8
PTPN6-214ENST00000540740 GRIN2BQ13224 1484 aa20.06■□□□□ 0.8
PTPN6-214ENST00000540740 GAPVD1Q14C86 1478 aa20.05■□□□□ 0.8
PTPN6-214ENST00000540740 MAGI1Q96QZ7 1491 aaPredicted RBP20.04■□□□□ 0.8
PTPN6-214ENST00000540740 TRIM41Q8WV44 630 aa20■□□□□ 0.79
PTPN6-214ENST00000540740 RIMBP3CA6NJZ7 1639 aa19.99■□□□□ 0.79
PTPN6-214ENST00000540740 RIMBP3BA6NNM3 1639 aa19.99■□□□□ 0.79
PTPN6-214ENST00000540740 RIMBP3Q9UFD9 1639 aa19.99■□□□□ 0.79
PTPN6-214ENST00000540740 SYNJ2O15056 1496 aa19.96■□□□□ 0.79
PTPN6-214ENST00000540740 CHMP7Q8WUX9 453 aaPredicted RBP19.95■□□□□ 0.78
PTPN6-214ENST00000540740 ARHGEF11O15085 1522 aa19.95■□□□□ 0.78
PTPN6-214ENST00000540740 ADAMTS12P58397 1594 aa19.9■□□□□ 0.78
PTPN6-214ENST00000540740 CLASP1Q7Z460 1538 aa19.89■□□□□ 0.77
PTPN6-214ENST00000540740 ERICH3Q5RHP9 1530 aa19.85■□□□□ 0.77
PTPN6-214ENST00000540740 GRIN2AQ12879 1464 aa19.83■□□□□ 0.76
PTPN6-214ENST00000540740 FHAD1B1AJZ9 1412 aa19.79■□□□□ 0.76
PTPN6-214ENST00000540740 ARAP1Q96P48 1450 aa19.78■□□□□ 0.76
PTPN6-214ENST00000540740 CEP170Q5SW79 1584 aa19.77■□□□□ 0.76
PTPN6-214ENST00000540740 CYB5RLQ6IPT4 315 aa19.74■□□□□ 0.75
PTPN6-214ENST00000540740 NUP160Q12769 1436 aa19.72■□□□□ 0.75
PTPN6-214ENST00000540740 KIF27Q86VH2 1401 aa19.72■□□□□ 0.75
PTPN6-214ENST00000540740 CUL7Q14999 1698 aa19.66■□□□□ 0.74
PTPN6-214ENST00000540740 IGF1RP08069 1367 aa19.64■□□□□ 0.73
PTPN6-214ENST00000540740 ERCC6L2Q5T890 1561 aa19.64■□□□□ 0.73
PTPN6-214ENST00000540740 SHROOM2Q13796 1616 aa19.62■□□□□ 0.73
PTPN6-214ENST00000540740 RUSC2Q8N2Y8 1516 aa19.62■□□□□ 0.73
PTPN6-214ENST00000540740 CARMIL1Q5VZK9 1371 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms