RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 NISCHQ9Y2I1 1504 aa28.99■■■□□ 2.23
SYNE1-238ENST00000540663 CCDC180Q9P1Z9 1646 aa25.88■■□□□ 1.73
SYNE1-238ENST00000540663 ABCC9O60706 1549 aa25.4■■□□□ 1.66
SYNE1-238ENST00000540663 RB1CC1Q8TDY2 1594 aa24.43■■□□□ 1.5
SYNE1-238ENST00000540663 NACADO15069 1562 aa24.37■■□□□ 1.49
SYNE1-238ENST00000540663 MYO15BQ96JP2 1530 aa24.21■■□□□ 1.47
SYNE1-238ENST00000540663 DCAF8L2P0C7V8 631 aa24.2■■□□□ 1.46
SYNE1-238ENST00000540663 ZCCHC6Q5VYS8 1495 aaKnown RBP24.13■■□□□ 1.45
SYNE1-238ENST00000540663 DCAF1Q9Y4B6 1507 aa24.04■■□□□ 1.44
SYNE1-238ENST00000540663 UNC13AQ9UPW8 1703 aa23.8■■□□□ 1.4
SYNE1-238ENST00000540663 PABPN1Q86U42 306 aaKnown RBP eCLIP23.67■■□□□ 1.38
SYNE1-238ENST00000540663 BICRAQ9NZM4 1560 aa23.65■■□□□ 1.38
SYNE1-238ENST00000540663 SCRIBQ14160 1630 aa23.54■■□□□ 1.36
SYNE1-238ENST00000540663 SHROOM4Q9ULL8 1493 aa23.51■■□□□ 1.35
SYNE1-238ENST00000540663 DNAJC5BQ9UF47 199 aa23.41■■□□□ 1.34
SYNE1-238ENST00000540663 EIF4G1Q04637 1599 aaKnown RBP23.06■■□□□ 1.28
SYNE1-238ENST00000540663 CC2D2AQ9P2K1 1620 aa22.99■■□□□ 1.27
SYNE1-238ENST00000540663 CECR2Q9BXF3 1484 aa22.87■■□□□ 1.25
SYNE1-238ENST00000540663 SMARCA4P51532 1647 aa22.53■■□□□ 1.2
SYNE1-238ENST00000540663 BAZ1AQ9NRL2 1556 aaPredicted RBP22.5■■□□□ 1.19
SYNE1-238ENST00000540663 NCAPD3P42695 1498 aa22.47■■□□□ 1.19
SYNE1-238ENST00000540663 ATAD2BQ9ULI0 1458 aa22.45■■□□□ 1.18
SYNE1-238ENST00000540663 SMARCA2P51531 1590 aa22.45■■□□□ 1.18
SYNE1-238ENST00000540663 HMGXB3Q12766 1538 aa22.37■■□□□ 1.17
SYNE1-238ENST00000540663 PEG3Q9GZU2 1588 aa22.34■■□□□ 1.17
SYNE1-238ENST00000540663 MROH2BQ7Z745 1585 aa22.31■■□□□ 1.16
SYNE1-238ENST00000540663 BAZ1BQ9UIG0 1483 aaKnown RBP22.26■■□□□ 1.15
SYNE1-238ENST00000540663 WIZO95785 1651 aa22.04■■□□□ 1.12
SYNE1-238ENST00000540663 RSF1Q96T23 1441 aaPredicted RBP22.01■■□□□ 1.11
SYNE1-238ENST00000540663 ERCC6Q03468 1493 aa21.94■■□□□ 1.1
SYNE1-238ENST00000540663 LAMC3Q9Y6N6 1575 aa21.92■■□□□ 1.1
SYNE1-238ENST00000540663 NESP48681 1621 aa21.91■■□□□ 1.1
SYNE1-238ENST00000540663 TOP2AP11388 1531 aaKnown RBP21.85■■□□□ 1.09
SYNE1-238ENST00000540663 CUX2O14529 1486 aa21.81■■□□□ 1.08
SYNE1-238ENST00000540663 CADPSQ9ULU8 1353 aa21.8■■□□□ 1.08
SYNE1-238ENST00000540663 PDS5BQ9NTI5 1447 aa21.79■■□□□ 1.08
SYNE1-238ENST00000540663 KIF21AQ7Z4S6 1674 aa21.67■■□□□ 1.06
SYNE1-238ENST00000540663 THOC2Q8NI27 1593 aaKnown RBP21.67■■□□□ 1.06
SYNE1-238ENST00000540663 CFTRP13569 1480 aa21.64■■□□□ 1.06
SYNE1-238ENST00000540663 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
SYNE1-238ENST00000540663 FANCD2Q9BXW9 1451 aa21.55■■□□□ 1.04
SYNE1-238ENST00000540663 MRC2Q9UBG0 1479 aa21.55■■□□□ 1.04
SYNE1-238ENST00000540663 CEP164Q9UPV0 1460 aa21.55■■□□□ 1.04
SYNE1-238ENST00000540663 WDR62O43379 1518 aa21.48■■□□□ 1.03
SYNE1-238ENST00000540663 PRDM2Q13029 1718 aa21.46■■□□□ 1.03
SYNE1-238ENST00000540663 URB2Q14146 1524 aaKnown RBP21.33■■□□□ 1
SYNE1-238ENST00000540663 DNAJC5Q9H3Z4 198 aa21.28■■□□□ 1
SYNE1-238ENST00000540663 SUPT5HO00267 1087 aaKnown RBP21.27■■□□□ 1
SYNE1-238ENST00000540663 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
SYNE1-238ENST00000540663 TOPBP1Q92547 1522 aa21.18■□□□□ 0.98
SYNE1-238ENST00000540663 DNMBPQ6XZF7 1577 aa21.16■□□□□ 0.98
SYNE1-238ENST00000540663 IFT140Q96RY7 1462 aa21.11■□□□□ 0.97
SYNE1-238ENST00000540663 POLA1P09884 1462 aaPredicted RBP20.99■□□□□ 0.95
SYNE1-238ENST00000540663 ZNF608Q9ULD9 1512 aaPredicted RBP20.98■□□□□ 0.95
SYNE1-238ENST00000540663 TARBP1Q13395 1621 aaKnown RBP20.96■□□□□ 0.95
SYNE1-238ENST00000540663 CUX1P39880 1505 aa20.95■□□□□ 0.94
SYNE1-238ENST00000540663 EIF4G3O43432 1585 aaKnown RBP20.91■□□□□ 0.94
SYNE1-238ENST00000540663 FGD5Q6ZNL6 1462 aa20.9■□□□□ 0.94
SYNE1-238ENST00000540663 SOGA1O94964 1423 aa20.9■□□□□ 0.94
SYNE1-238ENST00000540663 WDR97A6NE52 1622 aa20.86■□□□□ 0.93
SYNE1-238ENST00000540663 RAD54L2Q9Y4B4 1467 aa20.86■□□□□ 0.93
SYNE1-238ENST00000540663 AQRO60306 1485 aaKnown RBP eCLIP20.83■□□□□ 0.93
SYNE1-238ENST00000540663 OSCARQ8IYS5 282 aa20.83■□□□□ 0.93
SYNE1-238ENST00000540663 TDRD9Q8NDG6 1382 aaKnown RBP20.77■□□□□ 0.92
SYNE1-238ENST00000540663 WRNQ14191 1432 aaPredicted RBP eCLIP20.77■□□□□ 0.91
SYNE1-238ENST00000540663 TOP2BQ02880 1626 aa20.75■□□□□ 0.91
SYNE1-238ENST00000540663 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
SYNE1-238ENST00000540663 ABCA10Q8WWZ4 1543 aa20.73■□□□□ 0.91
SYNE1-238ENST00000540663 GRIN2BQ13224 1484 aa20.7■□□□□ 0.9
SYNE1-238ENST00000540663 SYNJ1O43426 1573 aa20.7■□□□□ 0.9
SYNE1-238ENST00000540663 MAGI1Q96QZ7 1491 aaPredicted RBP20.68■□□□□ 0.9
SYNE1-238ENST00000540663 GAPVD1Q14C86 1478 aa20.66■□□□□ 0.9
SYNE1-238ENST00000540663 SNAPC4Q5SXM2 1469 aa20.66■□□□□ 0.9
SYNE1-238ENST00000540663 CHD1O14646 1710 aa20.66■□□□□ 0.9
SYNE1-238ENST00000540663 ABCA5Q8WWZ7 1642 aa20.64■□□□□ 0.9
SYNE1-238ENST00000540663 PBRM1Q86U86 1689 aa20.61■□□□□ 0.89
SYNE1-238ENST00000540663 FBLN2P98095 1184 aa20.6■□□□□ 0.89
SYNE1-238ENST00000540663 SYNJ2O15056 1496 aa20.58■□□□□ 0.89
SYNE1-238ENST00000540663 CHMP7Q8WUX9 453 aaPredicted RBP20.56■□□□□ 0.88
SYNE1-238ENST00000540663 RIMBP3CA6NJZ7 1639 aa20.5■□□□□ 0.87
SYNE1-238ENST00000540663 RIMBP3BA6NNM3 1639 aa20.5■□□□□ 0.87
SYNE1-238ENST00000540663 RIMBP3Q9UFD9 1639 aa20.5■□□□□ 0.87
SYNE1-238ENST00000540663 ARHGEF11O15085 1522 aa20.5■□□□□ 0.87
SYNE1-238ENST00000540663 ERICH3Q5RHP9 1530 aa20.49■□□□□ 0.87
SYNE1-238ENST00000540663 CLASP1Q7Z460 1538 aa20.48■□□□□ 0.87
SYNE1-238ENST00000540663 ADAMTS12P58397 1594 aa20.46■□□□□ 0.87
SYNE1-238ENST00000540663 TRIM41Q8WV44 630 aa20.46■□□□□ 0.87
SYNE1-238ENST00000540663 FHAD1B1AJZ9 1412 aa20.44■□□□□ 0.86
SYNE1-238ENST00000540663 GRIN2AQ12879 1464 aa20.42■□□□□ 0.86
SYNE1-238ENST00000540663 KIF27Q86VH2 1401 aa20.36■□□□□ 0.85
SYNE1-238ENST00000540663 NUP160Q12769 1436 aa20.35■□□□□ 0.85
SYNE1-238ENST00000540663 ARAP1Q96P48 1450 aa20.32■□□□□ 0.84
SYNE1-238ENST00000540663 CEP170Q5SW79 1584 aa20.3■□□□□ 0.84
SYNE1-238ENST00000540663 IGF1RP08069 1367 aa20.28■□□□□ 0.84
SYNE1-238ENST00000540663 CUL7Q14999 1698 aa20.27■□□□□ 0.84
SYNE1-238ENST00000540663 CYB5RLQ6IPT4 315 aa20.27■□□□□ 0.84
SYNE1-238ENST00000540663 SHROOM2Q13796 1616 aa20.2■□□□□ 0.82
SYNE1-238ENST00000540663 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
SYNE1-238ENST00000540663 RUSC2Q8N2Y8 1516 aa20.16■□□□□ 0.82
SYNE1-238ENST00000540663 ERCC6L2Q5T890 1561 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms