RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 NISCHQ9Y2I1 1504 aa51.96■■■■■ 5.91
CHFR-217ENST00000540537 CCDC180Q9P1Z9 1646 aa46.49■■■■■ 5.03
CHFR-217ENST00000540537 ABCC9O60706 1549 aa45.98■■■■■ 4.95
CHFR-217ENST00000540537 RB1CC1Q8TDY2 1594 aa44.01■■■■■ 4.64
CHFR-217ENST00000540537 NACADO15069 1562 aa43.84■■■■■ 4.61
CHFR-217ENST00000540537 DCAF8L2P0C7V8 631 aa43.57■■■■■ 4.57
CHFR-217ENST00000540537 MYO15BQ96JP2 1530 aa43.42■■■■■ 4.54
CHFR-217ENST00000540537 ZCCHC6Q5VYS8 1495 aaKnown RBP43.18■■■■■ 4.5
CHFR-217ENST00000540537 UNC13AQ9UPW8 1703 aa43.01■■■■■ 4.48
CHFR-217ENST00000540537 DCAF1Q9Y4B6 1507 aa43.01■■■■■ 4.48
CHFR-217ENST00000540537 PABPN1Q86U42 306 aaKnown RBP eCLIP42.85■■■■■ 4.45
CHFR-217ENST00000540537 DNAJC5BQ9UF47 199 aa42.71■■■■■ 4.43
CHFR-217ENST00000540537 BICRAQ9NZM4 1560 aa42.69■■■■■ 4.43
CHFR-217ENST00000540537 SCRIBQ14160 1630 aa42.32■■■■■ 4.37
CHFR-217ENST00000540537 SHROOM4Q9ULL8 1493 aa42.26■■■■■ 4.36
CHFR-217ENST00000540537 EIF4G1Q04637 1599 aaKnown RBP41.62■■■■■ 4.25
CHFR-217ENST00000540537 CC2D2AQ9P2K1 1620 aa41.58■■■■■ 4.25
CHFR-217ENST00000540537 CECR2Q9BXF3 1484 aa41.4■■■■■ 4.22
CHFR-217ENST00000540537 SMARCA4P51532 1647 aa40.45■■■■■ 4.07
CHFR-217ENST00000540537 NCAPD3P42695 1498 aa40.45■■■■■ 4.07
CHFR-217ENST00000540537 ATAD2BQ9ULI0 1458 aa40.37■■■■■ 4.05
CHFR-217ENST00000540537 BAZ1AQ9NRL2 1556 aaPredicted RBP40.32■■■■■ 4.05
CHFR-217ENST00000540537 SMARCA2P51531 1590 aa40.31■■■■■ 4.04
CHFR-217ENST00000540537 HMGXB3Q12766 1538 aa40.21■■■■■ 4.03
CHFR-217ENST00000540537 PEG3Q9GZU2 1588 aa40.09■■■■■ 4.01
CHFR-217ENST00000540537 MROH2BQ7Z745 1585 aa40.02■■■■■ 4
CHFR-217ENST00000540537 BAZ1BQ9UIG0 1483 aaKnown RBP40■■■■□ 3.99
CHFR-217ENST00000540537 ERCC6Q03468 1493 aa39.69■■■■□ 3.94
CHFR-217ENST00000540537 NESP48681 1621 aa39.62■■■■□ 3.93
CHFR-217ENST00000540537 WIZO95785 1651 aa39.56■■■■□ 3.92
CHFR-217ENST00000540537 CUX2O14529 1486 aa39.52■■■■□ 3.92
CHFR-217ENST00000540537 LAMC3Q9Y6N6 1575 aa39.48■■■■□ 3.91
CHFR-217ENST00000540537 RSF1Q96T23 1441 aaPredicted RBP39.36■■■■□ 3.89
CHFR-217ENST00000540537 PDS5BQ9NTI5 1447 aa39.23■■■■□ 3.87
CHFR-217ENST00000540537 CADPSQ9ULU8 1353 aa39.22■■■■□ 3.87
CHFR-217ENST00000540537 THOC2Q8NI27 1593 aaKnown RBP39.18■■■■□ 3.86
CHFR-217ENST00000540537 KIF21AQ7Z4S6 1674 aa39.16■■■■□ 3.86
CHFR-217ENST00000540537 TOP2AP11388 1531 aaKnown RBP39.13■■■■□ 3.85
CHFR-217ENST00000540537 DNAJC5Q9H3Z4 198 aa38.95■■■■□ 3.83
CHFR-217ENST00000540537 CFTRP13569 1480 aa38.88■■■■□ 3.81
CHFR-217ENST00000540537 MRC2Q9UBG0 1479 aa38.86■■■■□ 3.81
CHFR-217ENST00000540537 CEP164Q9UPV0 1460 aa38.79■■■■□ 3.8
CHFR-217ENST00000540537 FANCD2Q9BXW9 1451 aa38.77■■■■□ 3.8
CHFR-217ENST00000540537 WDR62O43379 1518 aa38.76■■■■□ 3.8
CHFR-217ENST00000540537 CCDC88BA6NC98 1476 aa38.65■■■■□ 3.78
CHFR-217ENST00000540537 PRDM2Q13029 1718 aa38.56■■■■□ 3.76
CHFR-217ENST00000540537 URB2Q14146 1524 aaKnown RBP38.43■■■■□ 3.74
CHFR-217ENST00000540537 TOPBP1Q92547 1522 aa38.09■■■■□ 3.69
CHFR-217ENST00000540537 ABCC8Q09428 1581 aa38.08■■■■□ 3.69
CHFR-217ENST00000540537 IFT140Q96RY7 1462 aa38.01■■■■□ 3.67
CHFR-217ENST00000540537 DNMBPQ6XZF7 1577 aa38.01■■■■□ 3.67
CHFR-217ENST00000540537 SUPT5HO00267 1087 aaKnown RBP37.87■■■■□ 3.65
CHFR-217ENST00000540537 ZNF608Q9ULD9 1512 aaPredicted RBP37.86■■■■□ 3.65
CHFR-217ENST00000540537 OSCARQ8IYS5 282 aa37.74■■■■□ 3.63
CHFR-217ENST00000540537 POLA1P09884 1462 aaPredicted RBP37.73■■■■□ 3.63
CHFR-217ENST00000540537 TARBP1Q13395 1621 aaKnown RBP37.72■■■■□ 3.63
CHFR-217ENST00000540537 EIF4G3O43432 1585 aaKnown RBP37.7■■■■□ 3.63
CHFR-217ENST00000540537 CUX1P39880 1505 aa37.59■■■■□ 3.61
CHFR-217ENST00000540537 AQRO60306 1485 aaKnown RBP eCLIP37.57■■■■□ 3.6
CHFR-217ENST00000540537 SOGA1O94964 1423 aa37.55■■■■□ 3.6
CHFR-217ENST00000540537 FGD5Q6ZNL6 1462 aa37.55■■■■□ 3.6
CHFR-217ENST00000540537 RAD54L2Q9Y4B4 1467 aa37.55■■■■□ 3.6
CHFR-217ENST00000540537 WDR97A6NE52 1622 aa37.44■■■■□ 3.58
CHFR-217ENST00000540537 TDRD9Q8NDG6 1382 aaKnown RBP37.4■■■■□ 3.58
CHFR-217ENST00000540537 TRIM41Q8WV44 630 aa37.36■■■■□ 3.57
CHFR-217ENST00000540537 CHD1O14646 1710 aa37.33■■■■□ 3.57
CHFR-217ENST00000540537 SNAPC4Q5SXM2 1469 aa37.22■■■■□ 3.55
CHFR-217ENST00000540537 RIMBP3CA6NJZ7 1639 aa37.21■■■■□ 3.55
CHFR-217ENST00000540537 RIMBP3BA6NNM3 1639 aa37.21■■■■□ 3.55
CHFR-217ENST00000540537 RIMBP3Q9UFD9 1639 aa37.21■■■■□ 3.55
CHFR-217ENST00000540537 GRIN2BQ13224 1484 aa37.2■■■■□ 3.55
CHFR-217ENST00000540537 FBLN2P98095 1184 aa37.2■■■■□ 3.55
CHFR-217ENST00000540537 ABCA10Q8WWZ4 1543 aa37.18■■■■□ 3.54
CHFR-217ENST00000540537 MAGI1Q96QZ7 1491 aaPredicted RBP37.18■■■■□ 3.54
CHFR-217ENST00000540537 ARHGEF11O15085 1522 aa37.14■■■■□ 3.54
CHFR-217ENST00000540537 WRNQ14191 1432 aaPredicted RBP eCLIP37.13■■■■□ 3.531e-6■■■■■ 52.5
CHFR-217ENST00000540537 TOP2BQ02880 1626 aa37.13■■■■□ 3.53
CHFR-217ENST00000540537 BIVM-ERCC5R4GMW8 1640 aa37.13■■■■□ 3.53
CHFR-217ENST00000540537 GAPVD1Q14C86 1478 aa37.12■■■■□ 3.53
CHFR-217ENST00000540537 PBRM1Q86U86 1689 aa37.09■■■■□ 3.53
CHFR-217ENST00000540537 ABCA5Q8WWZ7 1642 aa37.08■■■■□ 3.53
CHFR-217ENST00000540537 SYNJ1O43426 1573 aa37.07■■■■□ 3.52
CHFR-217ENST00000540537 CHMP7Q8WUX9 453 aaPredicted RBP37.04■■■■□ 3.52
CHFR-217ENST00000540537 SYNJ2O15056 1496 aa37.03■■■■□ 3.52
CHFR-217ENST00000540537 CLASP1Q7Z460 1538 aa36.94■■■■□ 3.5
CHFR-217ENST00000540537 ARAP1Q96P48 1450 aa36.81■■■■□ 3.48
CHFR-217ENST00000540537 CYB5RLQ6IPT4 315 aa36.79■■■■□ 3.48
CHFR-217ENST00000540537 ADAMTS12P58397 1594 aa36.77■■■■□ 3.48
CHFR-217ENST00000540537 ERICH3Q5RHP9 1530 aa36.73■■■■□ 3.47
CHFR-217ENST00000540537 GRIN2AQ12879 1464 aa36.72■■■■□ 3.47
CHFR-217ENST00000540537 FHAD1B1AJZ9 1412 aa36.68■■■■□ 3.46
CHFR-217ENST00000540537 NUP160Q12769 1436 aa36.59■■■■□ 3.45
CHFR-217ENST00000540537 CEP170Q5SW79 1584 aa36.56■■■■□ 3.44
CHFR-217ENST00000540537 KIF27Q86VH2 1401 aa36.41■■■■□ 3.42
CHFR-217ENST00000540537 SHROOM2Q13796 1616 aa36.39■■■■□ 3.42
CHFR-217ENST00000540537 ERCC6L2Q5T890 1561 aa36.35■■■■□ 3.41
CHFR-217ENST00000540537 IGF1RP08069 1367 aa36.32■■■■□ 3.4
CHFR-217ENST00000540537 CUL7Q14999 1698 aa36.29■■■■□ 3.4
CHFR-217ENST00000540537 RUSC2Q8N2Y8 1516 aa36.24■■■■□ 3.39
CHFR-217ENST00000540537 TRHP20396 242 aaPredicted RBP36.23■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms