RNA–Protein interactions for RNA: ENST00000540504.2

PSMD3-204, Transcript of proteasome 26S subunit, non-ATPase 3, humanhuman

TSL 3

Gene PSMD3, Length 458 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMD3-204ENST00000540504 NISCHQ9Y2I1 1504 aa41.66■■■■■ 4.26
PSMD3-204ENST00000540504 CCDC180Q9P1Z9 1646 aa37.36■■■■□ 3.57
PSMD3-204ENST00000540504 ABCC9O60706 1549 aa37.08■■■■□ 3.53
PSMD3-204ENST00000540504 RB1CC1Q8TDY2 1594 aa35.47■■■■□ 3.27
PSMD3-204ENST00000540504 NACADO15069 1562 aa35.27■■■■□ 3.24
PSMD3-204ENST00000540504 DCAF8L2P0C7V8 631 aa35.02■■■■□ 3.2
PSMD3-204ENST00000540504 MYO15BQ96JP2 1530 aa34.89■■■■□ 3.18
PSMD3-204ENST00000540504 UNC13AQ9UPW8 1703 aa34.62■■■■□ 3.13
PSMD3-204ENST00000540504 DNAJC5BQ9UF47 199 aa34.61■■■■□ 3.13
PSMD3-204ENST00000540504 ZCCHC6Q5VYS8 1495 aaKnown RBP34.56■■■■□ 3.12
PSMD3-204ENST00000540504 PABPN1Q86U42 306 aaKnown RBP eCLIP34.53■■■■□ 3.125e-8■■□□□ 11.9
PSMD3-204ENST00000540504 DCAF1Q9Y4B6 1507 aa34.48■■■■□ 3.11
PSMD3-204ENST00000540504 BICRAQ9NZM4 1560 aa34.37■■■■□ 3.09
PSMD3-204ENST00000540504 SHROOM4Q9ULL8 1493 aa34.04■■■■□ 3.04
PSMD3-204ENST00000540504 SCRIBQ14160 1630 aa33.96■■■■□ 3.03
PSMD3-204ENST00000540504 CC2D2AQ9P2K1 1620 aa33.55■■■□□ 2.96
PSMD3-204ENST00000540504 EIF4G1Q04637 1599 aaKnown RBP33.53■■■□□ 2.96
PSMD3-204ENST00000540504 CECR2Q9BXF3 1484 aa33.43■■■□□ 2.94
PSMD3-204ENST00000540504 NCAPD3P42695 1498 aa32.54■■■□□ 2.8
PSMD3-204ENST00000540504 SMARCA4P51532 1647 aa32.46■■■□□ 2.79
PSMD3-204ENST00000540504 ATAD2BQ9ULI0 1458 aa32.44■■■□□ 2.78
PSMD3-204ENST00000540504 SMARCA2P51531 1590 aa32.41■■■□□ 2.78
PSMD3-204ENST00000540504 BAZ1AQ9NRL2 1556 aaPredicted RBP32.36■■■□□ 2.77
PSMD3-204ENST00000540504 HMGXB3Q12766 1538 aa32.33■■■□□ 2.77
PSMD3-204ENST00000540504 PEG3Q9GZU2 1588 aa32.19■■■□□ 2.74
PSMD3-204ENST00000540504 BAZ1BQ9UIG0 1483 aaKnown RBP32.14■■■□□ 2.74
PSMD3-204ENST00000540504 MROH2BQ7Z745 1585 aa32.07■■■□□ 2.72
PSMD3-204ENST00000540504 ERCC6Q03468 1493 aa32.04■■■□□ 2.72
PSMD3-204ENST00000540504 CUX2O14529 1486 aa31.98■■■□□ 2.71
PSMD3-204ENST00000540504 NESP48681 1621 aa31.89■■■□□ 2.7
PSMD3-204ENST00000540504 LAMC3Q9Y6N6 1575 aa31.81■■■□□ 2.68
PSMD3-204ENST00000540504 DNAJC5Q9H3Z4 198 aa31.73■■■□□ 2.67
PSMD3-204ENST00000540504 WIZO95785 1651 aa31.69■■■□□ 2.66
PSMD3-204ENST00000540504 PDS5BQ9NTI5 1447 aa31.61■■■□□ 2.65
PSMD3-204ENST00000540504 THOC2Q8NI27 1593 aaKnown RBP31.59■■■□□ 2.65
PSMD3-204ENST00000540504 CADPSQ9ULU8 1353 aa31.56■■■□□ 2.64
PSMD3-204ENST00000540504 KIF21AQ7Z4S6 1674 aa31.53■■■□□ 2.64
PSMD3-204ENST00000540504 RSF1Q96T23 1441 aaPredicted RBP31.48■■■□□ 2.63
PSMD3-204ENST00000540504 TOP2AP11388 1531 aaKnown RBP31.34■■■□□ 2.61
PSMD3-204ENST00000540504 MRC2Q9UBG0 1479 aa31.29■■■□□ 2.6
PSMD3-204ENST00000540504 CFTRP13569 1480 aa31.23■■■□□ 2.59
PSMD3-204ENST00000540504 WDR62O43379 1518 aa31.22■■■□□ 2.59
PSMD3-204ENST00000540504 CEP164Q9UPV0 1460 aa31.21■■■□□ 2.59
PSMD3-204ENST00000540504 FANCD2Q9BXW9 1451 aa31.18■■■□□ 2.58
PSMD3-204ENST00000540504 PRDM2Q13029 1718 aa30.96■■■□□ 2.55
PSMD3-204ENST00000540504 CCDC88BA6NC98 1476 aa30.95■■■□□ 2.55
PSMD3-204ENST00000540504 URB2Q14146 1524 aaKnown RBP30.89■■■□□ 2.54
PSMD3-204ENST00000540504 ABCC8Q09428 1581 aa30.63■■■□□ 2.49
PSMD3-204ENST00000540504 TOPBP1Q92547 1522 aa30.6■■■□□ 2.49
PSMD3-204ENST00000540504 IFT140Q96RY7 1462 aa30.59■■■□□ 2.49
PSMD3-204ENST00000540504 OSCARQ8IYS5 282 aa30.53■■■□□ 2.48
PSMD3-204ENST00000540504 DNMBPQ6XZF7 1577 aa30.53■■■□□ 2.48
PSMD3-204ENST00000540504 ZNF608Q9ULD9 1512 aaPredicted RBP30.46■■■□□ 2.47
PSMD3-204ENST00000540504 TRIM41Q8WV44 630 aa30.34■■■□□ 2.45
PSMD3-204ENST00000540504 EIF4G3O43432 1585 aaKnown RBP30.33■■■□□ 2.45
PSMD3-204ENST00000540504 TARBP1Q13395 1621 aaKnown RBP30.33■■■□□ 2.45
PSMD3-204ENST00000540504 POLA1P09884 1462 aaPredicted RBP30.3■■■□□ 2.44
PSMD3-204ENST00000540504 AQRO60306 1485 aaKnown RBP eCLIP30.21■■■□□ 2.431e-7■■■■□ 21.9
PSMD3-204ENST00000540504 SOGA1O94964 1423 aa30.18■■■□□ 2.42
PSMD3-204ENST00000540504 SUPT5HO00267 1087 aaKnown RBP30.16■■■□□ 2.42
PSMD3-204ENST00000540504 RAD54L2Q9Y4B4 1467 aa30.15■■■□□ 2.42
PSMD3-204ENST00000540504 FGD5Q6ZNL6 1462 aa30.12■■■□□ 2.41
PSMD3-204ENST00000540504 CUX1P39880 1505 aa30.12■■■□□ 2.41
PSMD3-204ENST00000540504 WDR97A6NE52 1622 aa30.11■■■□□ 2.41
PSMD3-204ENST00000540504 RIMBP3CA6NJZ7 1639 aa30.08■■■□□ 2.41
PSMD3-204ENST00000540504 RIMBP3BA6NNM3 1639 aa30.08■■■□□ 2.41
PSMD3-204ENST00000540504 RIMBP3Q9UFD9 1639 aa30.08■■■□□ 2.41
PSMD3-204ENST00000540504 CHD1O14646 1710 aa30.08■■■□□ 2.41
PSMD3-204ENST00000540504 TDRD9Q8NDG6 1382 aaKnown RBP30.05■■■□□ 2.4
PSMD3-204ENST00000540504 ARHGEF11O15085 1522 aa30.01■■■□□ 2.39
PSMD3-204ENST00000540504 FBLN2P98095 1184 aa29.98■■■□□ 2.39
PSMD3-204ENST00000540504 SNAPC4Q5SXM2 1469 aa29.93■■■□□ 2.38
PSMD3-204ENST00000540504 GRIN2BQ13224 1484 aa29.91■■■□□ 2.38
PSMD3-204ENST00000540504 MAGI1Q96QZ7 1491 aaPredicted RBP29.91■■■□□ 2.38
PSMD3-204ENST00000540504 ABCA10Q8WWZ4 1543 aa29.83■■■□□ 2.37
PSMD3-204ENST00000540504 CHMP7Q8WUX9 453 aaPredicted RBP29.83■■■□□ 2.37
PSMD3-204ENST00000540504 GAPVD1Q14C86 1478 aa29.81■■■□□ 2.36
PSMD3-204ENST00000540504 PBRM1Q86U86 1689 aa29.79■■■□□ 2.36
PSMD3-204ENST00000540504 SYNJ2O15056 1496 aa29.79■■■□□ 2.36
PSMD3-204ENST00000540504 SYNJ1O43426 1573 aa29.78■■■□□ 2.36
PSMD3-204ENST00000540504 ABCA5Q8WWZ7 1642 aa29.76■■■□□ 2.35
PSMD3-204ENST00000540504 CYB5RLQ6IPT4 315 aa29.75■■■□□ 2.35
PSMD3-204ENST00000540504 CLASP1Q7Z460 1538 aa29.75■■■□□ 2.35
PSMD3-204ENST00000540504 WRNQ14191 1432 aaPredicted RBP eCLIP29.74■■■□□ 2.35
PSMD3-204ENST00000540504 BIVM-ERCC5R4GMW8 1640 aa29.73■■■□□ 2.35
PSMD3-204ENST00000540504 TOP2BQ02880 1626 aa29.72■■■□□ 2.35
PSMD3-204ENST00000540504 ARAP1Q96P48 1450 aa29.71■■■□□ 2.35
PSMD3-204ENST00000540504 ADAMTS12P58397 1594 aa29.52■■■□□ 2.32
PSMD3-204ENST00000540504 GRIN2AQ12879 1464 aa29.51■■■□□ 2.31
PSMD3-204ENST00000540504 ERICH3Q5RHP9 1530 aa29.47■■■□□ 2.31
PSMD3-204ENST00000540504 FHAD1B1AJZ9 1412 aa29.46■■■□□ 2.31
PSMD3-204ENST00000540504 NUP160Q12769 1436 aa29.41■■■□□ 2.3
PSMD3-204ENST00000540504 TRHP20396 242 aaPredicted RBP29.38■■■□□ 2.29
PSMD3-204ENST00000540504 CEP170Q5SW79 1584 aa29.38■■■□□ 2.29
PSMD3-204ENST00000540504 SHROOM2Q13796 1616 aa29.27■■■□□ 2.28
PSMD3-204ENST00000540504 ERCC6L2Q5T890 1561 aa29.24■■■□□ 2.27
PSMD3-204ENST00000540504 KIF27Q86VH2 1401 aa29.15■■■□□ 2.26
PSMD3-204ENST00000540504 JPH4Q96JJ6 628 aa29.11■■■□□ 2.25
PSMD3-204ENST00000540504 IGF1RP08069 1367 aa29.1■■■□□ 2.25
PSMD3-204ENST00000540504 PRG4Q92954 1404 aaPredicted RBP29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms