RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-223ENST00000540475 NISCHQ9Y2I1 1504 aa32.77■■■□□ 2.84
SEMA4D-223ENST00000540475 CCDC180Q9P1Z9 1646 aa29.37■■■□□ 2.29
SEMA4D-223ENST00000540475 ABCC9O60706 1549 aa28.99■■■□□ 2.23
SEMA4D-223ENST00000540475 RB1CC1Q8TDY2 1594 aa27.79■■■□□ 2.04
SEMA4D-223ENST00000540475 NACADO15069 1562 aa27.69■■■□□ 2.02
SEMA4D-223ENST00000540475 MYO15BQ96JP2 1530 aa27.46■■□□□ 1.99
SEMA4D-223ENST00000540475 DCAF8L2P0C7V8 631 aa27.36■■□□□ 1.97
SEMA4D-223ENST00000540475 UNC13AQ9UPW8 1703 aa27.24■■□□□ 1.95
SEMA4D-223ENST00000540475 ZCCHC6Q5VYS8 1495 aaKnown RBP27.2■■□□□ 1.95
SEMA4D-223ENST00000540475 DCAF1Q9Y4B6 1507 aa27.16■■□□□ 1.94
SEMA4D-223ENST00000540475 DNAJC5BQ9UF47 199 aa27.07■■□□□ 1.92
SEMA4D-223ENST00000540475 BICRAQ9NZM4 1560 aa27.01■■□□□ 1.92
SEMA4D-223ENST00000540475 PABPN1Q86U42 306 aaKnown RBP eCLIP27■■□□□ 1.91
SEMA4D-223ENST00000540475 SHROOM4Q9ULL8 1493 aa26.71■■□□□ 1.87
SEMA4D-223ENST00000540475 SCRIBQ14160 1630 aa26.63■■□□□ 1.85
SEMA4D-223ENST00000540475 EIF4G1Q04637 1599 aaKnown RBP26.29■■□□□ 1.8
SEMA4D-223ENST00000540475 CC2D2AQ9P2K1 1620 aa26.28■■□□□ 1.8
SEMA4D-223ENST00000540475 CECR2Q9BXF3 1484 aa26.13■■□□□ 1.77
SEMA4D-223ENST00000540475 NCAPD3P42695 1498 aa25.57■■□□□ 1.68
SEMA4D-223ENST00000540475 SMARCA4P51532 1647 aa25.51■■□□□ 1.67
SEMA4D-223ENST00000540475 ATAD2BQ9ULI0 1458 aa25.47■■□□□ 1.67
SEMA4D-223ENST00000540475 SMARCA2P51531 1590 aa25.42■■□□□ 1.66
SEMA4D-223ENST00000540475 BAZ1AQ9NRL2 1556 aaPredicted RBP25.41■■□□□ 1.66
SEMA4D-223ENST00000540475 HMGXB3Q12766 1538 aa25.38■■□□□ 1.65
SEMA4D-223ENST00000540475 PEG3Q9GZU2 1588 aa25.34■■□□□ 1.65
SEMA4D-223ENST00000540475 MROH2BQ7Z745 1585 aa25.22■■□□□ 1.63
SEMA4D-223ENST00000540475 BAZ1BQ9UIG0 1483 aaKnown RBP25.19■■□□□ 1.62
SEMA4D-223ENST00000540475 NESP48681 1621 aa25■■□□□ 1.59
SEMA4D-223ENST00000540475 CUX2O14529 1486 aa24.99■■□□□ 1.59
SEMA4D-223ENST00000540475 ERCC6Q03468 1493 aa24.99■■□□□ 1.59
SEMA4D-223ENST00000540475 LAMC3Q9Y6N6 1575 aa24.94■■□□□ 1.58
SEMA4D-223ENST00000540475 WIZO95785 1651 aa24.94■■□□□ 1.58
SEMA4D-223ENST00000540475 RSF1Q96T23 1441 aaPredicted RBP24.78■■□□□ 1.56
SEMA4D-223ENST00000540475 THOC2Q8NI27 1593 aaKnown RBP24.77■■□□□ 1.56
SEMA4D-223ENST00000540475 CADPSQ9ULU8 1353 aa24.75■■□□□ 1.55
SEMA4D-223ENST00000540475 PDS5BQ9NTI5 1447 aa24.74■■□□□ 1.55
SEMA4D-223ENST00000540475 KIF21AQ7Z4S6 1674 aa24.74■■□□□ 1.55
SEMA4D-223ENST00000540475 DNAJC5Q9H3Z4 198 aa24.72■■□□□ 1.55
SEMA4D-223ENST00000540475 TOP2AP11388 1531 aaKnown RBP24.64■■□□□ 1.53
SEMA4D-223ENST00000540475 CFTRP13569 1480 aa24.54■■□□□ 1.52
SEMA4D-223ENST00000540475 MRC2Q9UBG0 1479 aa24.51■■□□□ 1.51
SEMA4D-223ENST00000540475 WDR62O43379 1518 aa24.49■■□□□ 1.51
SEMA4D-223ENST00000540475 FANCD2Q9BXW9 1451 aa24.44■■□□□ 1.5
SEMA4D-223ENST00000540475 CEP164Q9UPV0 1460 aa24.44■■□□□ 1.5
SEMA4D-223ENST00000540475 PRDM2Q13029 1718 aa24.38■■□□□ 1.49
SEMA4D-223ENST00000540475 CCDC88BA6NC98 1476 aa24.35■■□□□ 1.49
SEMA4D-223ENST00000540475 URB2Q14146 1524 aaKnown RBP24.24■■□□□ 1.47
SEMA4D-223ENST00000540475 ABCC8Q09428 1581 aa24.03■■□□□ 1.44
SEMA4D-223ENST00000540475 TOPBP1Q92547 1522 aa24.02■■□□□ 1.44
SEMA4D-223ENST00000540475 IFT140Q96RY7 1462 aa23.97■■□□□ 1.43
SEMA4D-223ENST00000540475 DNMBPQ6XZF7 1577 aa23.96■■□□□ 1.43
SEMA4D-223ENST00000540475 ZNF608Q9ULD9 1512 aaPredicted RBP23.88■■□□□ 1.41
SEMA4D-223ENST00000540475 TARBP1Q13395 1621 aaKnown RBP23.84■■□□□ 1.41
SEMA4D-223ENST00000540475 OSCARQ8IYS5 282 aa23.84■■□□□ 1.41
SEMA4D-223ENST00000540475 POLA1P09884 1462 aaPredicted RBP23.79■■□□□ 1.4
SEMA4D-223ENST00000540475 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
SEMA4D-223ENST00000540475 CUX1P39880 1505 aa23.69■■□□□ 1.38
SEMA4D-223ENST00000540475 AQRO60306 1485 aaKnown RBP eCLIP23.68■■□□□ 1.38
SEMA4D-223ENST00000540475 SUPT5HO00267 1087 aaKnown RBP23.68■■□□□ 1.38
SEMA4D-223ENST00000540475 SOGA1O94964 1423 aa23.66■■□□□ 1.38
SEMA4D-223ENST00000540475 WDR97A6NE52 1622 aa23.66■■□□□ 1.38
SEMA4D-223ENST00000540475 RAD54L2Q9Y4B4 1467 aa23.65■■□□□ 1.38
SEMA4D-223ENST00000540475 FGD5Q6ZNL6 1462 aa23.64■■□□□ 1.38
SEMA4D-223ENST00000540475 CHD1O14646 1710 aa23.59■■□□□ 1.37
SEMA4D-223ENST00000540475 TRIM41Q8WV44 630 aa23.56■■□□□ 1.36
SEMA4D-223ENST00000540475 TDRD9Q8NDG6 1382 aaKnown RBP23.55■■□□□ 1.36
SEMA4D-223ENST00000540475 RIMBP3CA6NJZ7 1639 aa23.53■■□□□ 1.36
SEMA4D-223ENST00000540475 RIMBP3BA6NNM3 1639 aa23.53■■□□□ 1.36
SEMA4D-223ENST00000540475 RIMBP3Q9UFD9 1639 aa23.53■■□□□ 1.36
SEMA4D-223ENST00000540475 ARHGEF11O15085 1522 aa23.47■■□□□ 1.35
SEMA4D-223ENST00000540475 GRIN2BQ13224 1484 aa23.44■■□□□ 1.34
SEMA4D-223ENST00000540475 SNAPC4Q5SXM2 1469 aa23.44■■□□□ 1.34
SEMA4D-223ENST00000540475 MAGI1Q96QZ7 1491 aaPredicted RBP23.44■■□□□ 1.34
SEMA4D-223ENST00000540475 ABCA10Q8WWZ4 1543 aa23.43■■□□□ 1.34
SEMA4D-223ENST00000540475 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
SEMA4D-223ENST00000540475 PBRM1Q86U86 1689 aa23.4■■□□□ 1.34
SEMA4D-223ENST00000540475 TOP2BQ02880 1626 aa23.4■■□□□ 1.34
SEMA4D-223ENST00000540475 ABCA5Q8WWZ7 1642 aa23.4■■□□□ 1.34
SEMA4D-223ENST00000540475 GAPVD1Q14C86 1478 aa23.39■■□□□ 1.34
SEMA4D-223ENST00000540475 FBLN2P98095 1184 aa23.38■■□□□ 1.33
SEMA4D-223ENST00000540475 SYNJ2O15056 1496 aa23.36■■□□□ 1.33
SEMA4D-223ENST00000540475 WRNQ14191 1432 aaPredicted RBP eCLIP23.34■■□□□ 1.33
SEMA4D-223ENST00000540475 CLASP1Q7Z460 1538 aa23.34■■□□□ 1.33
SEMA4D-223ENST00000540475 SYNJ1O43426 1573 aa23.33■■□□□ 1.33
SEMA4D-223ENST00000540475 CHMP7Q8WUX9 453 aaPredicted RBP23.31■■□□□ 1.32
SEMA4D-223ENST00000540475 ARAP1Q96P48 1450 aa23.24■■□□□ 1.31
SEMA4D-223ENST00000540475 CYB5RLQ6IPT4 315 aa23.22■■□□□ 1.31
SEMA4D-223ENST00000540475 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
SEMA4D-223ENST00000540475 ERICH3Q5RHP9 1530 aa23.16■■□□□ 1.3
SEMA4D-223ENST00000540475 GRIN2AQ12879 1464 aa23.15■■□□□ 1.3
SEMA4D-223ENST00000540475 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
SEMA4D-223ENST00000540475 NUP160Q12769 1436 aa23.09■■□□□ 1.29
SEMA4D-223ENST00000540475 CEP170Q5SW79 1584 aa23.06■■□□□ 1.28
SEMA4D-223ENST00000540475 SHROOM2Q13796 1616 aa23■■□□□ 1.27
SEMA4D-223ENST00000540475 ERCC6L2Q5T890 1561 aa22.94■■□□□ 1.26
SEMA4D-223ENST00000540475 IGF1RP08069 1367 aa22.89■■□□□ 1.26
SEMA4D-223ENST00000540475 KIF27Q86VH2 1401 aa22.89■■□□□ 1.25
SEMA4D-223ENST00000540475 CUL7Q14999 1698 aa22.86■■□□□ 1.25
SEMA4D-223ENST00000540475 RUSC2Q8N2Y8 1516 aa22.84■■□□□ 1.25
SEMA4D-223ENST00000540475 TRHP20396 242 aaPredicted RBP22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms