RNA–Protein interactions for RNA: ENST00000540445.5

LMO3-222, Transcript of LIM domain only 3, humanhuman

TSL 2 BASIC

Gene LMO3, Length 906 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-222ENST00000540445 NISCHQ9Y2I1 1504 aa22.43■■□□□ 1.18
LMO3-222ENST00000540445 CCDC180Q9P1Z9 1646 aa20.16■□□□□ 0.82
LMO3-222ENST00000540445 ABCC9O60706 1549 aa19.94■□□□□ 0.78
LMO3-222ENST00000540445 RB1CC1Q8TDY2 1594 aa19.07■□□□□ 0.64
LMO3-222ENST00000540445 NACADO15069 1562 aa18.98■□□□□ 0.63
LMO3-222ENST00000540445 MYO15BQ96JP2 1530 aa18.78■□□□□ 0.6
LMO3-222ENST00000540445 UNC13AQ9UPW8 1703 aa18.77■□□□□ 0.6
LMO3-222ENST00000540445 DCAF8L2P0C7V8 631 aa18.77■□□□□ 0.6
LMO3-222ENST00000540445 DNAJC5BQ9UF47 199 aa18.63■□□□□ 0.57
LMO3-222ENST00000540445 ZCCHC6Q5VYS8 1495 aaKnown RBP18.63■□□□□ 0.57
LMO3-222ENST00000540445 DCAF1Q9Y4B6 1507 aa18.58■□□□□ 0.56
LMO3-222ENST00000540445 BICRAQ9NZM4 1560 aa18.57■□□□□ 0.56
LMO3-222ENST00000540445 PABPN1Q86U42 306 aaKnown RBP eCLIP18.54■□□□□ 0.56
LMO3-222ENST00000540445 SHROOM4Q9ULL8 1493 aa18.3■□□□□ 0.52
LMO3-222ENST00000540445 SCRIBQ14160 1630 aa18.3■□□□□ 0.52
LMO3-222ENST00000540445 CC2D2AQ9P2K1 1620 aa18.08■□□□□ 0.48
LMO3-222ENST00000540445 EIF4G1Q04637 1599 aaKnown RBP18.06■□□□□ 0.48
LMO3-222ENST00000540445 CECR2Q9BXF3 1484 aa17.95■□□□□ 0.46
LMO3-222ENST00000540445 SMARCA4P51532 1647 aa17.5■□□□□ 0.39
LMO3-222ENST00000540445 NCAPD3P42695 1498 aa17.5■□□□□ 0.39
LMO3-222ENST00000540445 ATAD2BQ9ULI0 1458 aa17.46■□□□□ 0.39
LMO3-222ENST00000540445 SMARCA2P51531 1590 aa17.42■□□□□ 0.38
LMO3-222ENST00000540445 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
LMO3-222ENST00000540445 BAZ1AQ9NRL2 1556 aaPredicted RBP17.4■□□□□ 0.38
LMO3-222ENST00000540445 PEG3Q9GZU2 1588 aa17.36■□□□□ 0.37
LMO3-222ENST00000540445 MROH2BQ7Z745 1585 aa17.28■□□□□ 0.36
LMO3-222ENST00000540445 BAZ1BQ9UIG0 1483 aaKnown RBP17.27■□□□□ 0.36
LMO3-222ENST00000540445 NESP48681 1621 aa17.18■□□□□ 0.34
LMO3-222ENST00000540445 CUX2O14529 1486 aa17.18■□□□□ 0.34
LMO3-222ENST00000540445 ERCC6Q03468 1493 aa17.18■□□□□ 0.34
LMO3-222ENST00000540445 LAMC3Q9Y6N6 1575 aa17.11■□□□□ 0.33
LMO3-222ENST00000540445 WIZO95785 1651 aa17.11■□□□□ 0.33
LMO3-222ENST00000540445 THOC2Q8NI27 1593 aaKnown RBP17.06■□□□□ 0.32
LMO3-222ENST00000540445 KIF21AQ7Z4S6 1674 aa17.04■□□□□ 0.32
LMO3-222ENST00000540445 DNAJC5Q9H3Z4 198 aa17.01■□□□□ 0.31
LMO3-222ENST00000540445 PDS5BQ9NTI5 1447 aa16.95■□□□□ 0.3
LMO3-222ENST00000540445 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
LMO3-222ENST00000540445 RSF1Q96T23 1441 aaPredicted RBP16.94■□□□□ 0.3
LMO3-222ENST00000540445 TOP2AP11388 1531 aaKnown RBP16.88■□□□□ 0.29
LMO3-222ENST00000540445 MRC2Q9UBG0 1479 aa16.82■□□□□ 0.28
LMO3-222ENST00000540445 WDR62O43379 1518 aa16.81■□□□□ 0.28
LMO3-222ENST00000540445 CFTRP13569 1480 aa16.8■□□□□ 0.28
LMO3-222ENST00000540445 PRDM2Q13029 1718 aa16.77■□□□□ 0.28
LMO3-222ENST00000540445 CEP164Q9UPV0 1460 aa16.77■□□□□ 0.28
LMO3-222ENST00000540445 FANCD2Q9BXW9 1451 aa16.76■□□□□ 0.27
LMO3-222ENST00000540445 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
LMO3-222ENST00000540445 URB2Q14146 1524 aaKnown RBP16.65■□□□□ 0.26
LMO3-222ENST00000540445 TOPBP1Q92547 1522 aa16.47■□□□□ 0.23
LMO3-222ENST00000540445 DNMBPQ6XZF7 1577 aa16.44■□□□□ 0.22
LMO3-222ENST00000540445 ABCC8Q09428 1581 aa16.43■□□□□ 0.22
LMO3-222ENST00000540445 IFT140Q96RY7 1462 aa16.43■□□□□ 0.22
LMO3-222ENST00000540445 ZNF608Q9ULD9 1512 aaPredicted RBP16.4■□□□□ 0.22
LMO3-222ENST00000540445 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
LMO3-222ENST00000540445 EIF4G3O43432 1585 aaKnown RBP16.35■□□□□ 0.21
LMO3-222ENST00000540445 OSCARQ8IYS5 282 aa16.33■□□□□ 0.2
LMO3-222ENST00000540445 POLA1P09884 1462 aaPredicted RBP16.3■□□□□ 0.2
LMO3-222ENST00000540445 SUPT5HO00267 1087 aaKnown RBP16.28■□□□□ 0.2
LMO3-222ENST00000540445 CHD1O14646 1710 aa16.25■□□□□ 0.19
LMO3-222ENST00000540445 CUX1P39880 1505 aa16.24■□□□□ 0.19
LMO3-222ENST00000540445 AQRO60306 1485 aaKnown RBP eCLIP16.24■□□□□ 0.19
LMO3-222ENST00000540445 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
LMO3-222ENST00000540445 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
LMO3-222ENST00000540445 AEBP2Q6ZN18 517 aaPredicted RBP16.22■□□□□ 0.19
LMO3-222ENST00000540445 RIMBP3CA6NJZ7 1639 aa16.22■□□□□ 0.19
LMO3-222ENST00000540445 RIMBP3BA6NNM3 1639 aa16.22■□□□□ 0.19
LMO3-222ENST00000540445 RIMBP3Q9UFD9 1639 aa16.22■□□□□ 0.19
LMO3-222ENST00000540445 WDR97A6NE52 1622 aa16.21■□□□□ 0.19
LMO3-222ENST00000540445 FGD5Q6ZNL6 1462 aa16.21■□□□□ 0.19
LMO3-222ENST00000540445 SOGA1O94964 1423 aa16.19■□□□□ 0.18
LMO3-222ENST00000540445 ARHGEF11O15085 1522 aa16.14■□□□□ 0.18
LMO3-222ENST00000540445 TDRD9Q8NDG6 1382 aaKnown RBP16.13■□□□□ 0.17
LMO3-222ENST00000540445 PBRM1Q86U86 1689 aa16.1■□□□□ 0.17
LMO3-222ENST00000540445 SNAPC4Q5SXM2 1469 aa16.1■□□□□ 0.17
LMO3-222ENST00000540445 MAGI1Q96QZ7 1491 aaPredicted RBP16.07■□□□□ 0.16
LMO3-222ENST00000540445 ABCA5Q8WWZ7 1642 aa16.06■□□□□ 0.16
LMO3-222ENST00000540445 GRIN2BQ13224 1484 aa16.06■□□□□ 0.16
LMO3-222ENST00000540445 BIVM-ERCC5R4GMW8 1640 aa16.05■□□□□ 0.16
LMO3-222ENST00000540445 ABCA10Q8WWZ4 1543 aa16.05■□□□□ 0.16
LMO3-222ENST00000540445 CLASP1Q7Z460 1538 aa16.04■□□□□ 0.16
LMO3-222ENST00000540445 GAPVD1Q14C86 1478 aa16.03■□□□□ 0.16
LMO3-222ENST00000540445 TOP2BQ02880 1626 aa16.02■□□□□ 0.16
LMO3-222ENST00000540445 FBLN2P98095 1184 aa16.02■□□□□ 0.16
LMO3-222ENST00000540445 SYNJ1O43426 1573 aa16■□□□□ 0.15
LMO3-222ENST00000540445 SYNJ2O15056 1496 aa16■□□□□ 0.15
LMO3-222ENST00000540445 ARAP1Q96P48 1450 aa16■□□□□ 0.15
LMO3-222ENST00000540445 WRNQ14191 1432 aaPredicted RBP eCLIP15.95■□□□□ 0.14
LMO3-222ENST00000540445 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
LMO3-222ENST00000540445 CYB5RLQ6IPT4 315 aa15.93■□□□□ 0.14
LMO3-222ENST00000540445 ADAMTS12P58397 1594 aa15.92■□□□□ 0.14
LMO3-222ENST00000540445 GRIN2AQ12879 1464 aa15.87■□□□□ 0.13
LMO3-222ENST00000540445 ERICH3Q5RHP9 1530 aa15.85■□□□□ 0.13
LMO3-222ENST00000540445 CEP170Q5SW79 1584 aa15.84■□□□□ 0.13
LMO3-222ENST00000540445 NUP160Q12769 1436 aa15.83■□□□□ 0.12
LMO3-222ENST00000540445 FHAD1B1AJZ9 1412 aa15.82■□□□□ 0.12
LMO3-222ENST00000540445 SHROOM2Q13796 1616 aa15.8■□□□□ 0.12
LMO3-222ENST00000540445 ERCC6L2Q5T890 1561 aa15.79■□□□□ 0.12
LMO3-222ENST00000540445 TRHP20396 242 aaPredicted RBP15.69■□□□□ 0.1
LMO3-222ENST00000540445 RUSC2Q8N2Y8 1516 aa15.68■□□□□ 0.1
LMO3-222ENST00000540445 CUL7Q14999 1698 aa15.67■□□□□ 0.1
LMO3-222ENST00000540445 KIF27Q86VH2 1401 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms