RNA–Protein interactions for RNA: ENST00000540378.1

LRTM2-204, Transcript of leucine rich repeats and transmembrane domains 2, humanhuman

TSL 4

Gene LRTM2, Length 537 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM2-204ENST00000540378 NISCHQ9Y2I1 1504 aa38.14■■■■□ 3.7
LRTM2-204ENST00000540378 CCDC180Q9P1Z9 1646 aa34.19■■■■□ 3.06
LRTM2-204ENST00000540378 ABCC9O60706 1549 aa34.13■■■■□ 3.05
LRTM2-204ENST00000540378 RB1CC1Q8TDY2 1594 aa32.51■■■□□ 2.79
LRTM2-204ENST00000540378 NACADO15069 1562 aa32.29■■■□□ 2.76
LRTM2-204ENST00000540378 DCAF8L2P0C7V8 631 aa32.2■■■□□ 2.75
LRTM2-204ENST00000540378 DNAJC5BQ9UF47 199 aa31.85■■■□□ 2.69
LRTM2-204ENST00000540378 MYO15BQ96JP2 1530 aa31.84■■■□□ 2.69
LRTM2-204ENST00000540378 PABPN1Q86U42 306 aaKnown RBP eCLIP31.77■■■□□ 2.68
LRTM2-204ENST00000540378 UNC13AQ9UPW8 1703 aa31.75■■■□□ 2.67
LRTM2-204ENST00000540378 ZCCHC6Q5VYS8 1495 aaKnown RBP31.65■■■□□ 2.66
LRTM2-204ENST00000540378 BICRAQ9NZM4 1560 aa31.53■■■□□ 2.64
LRTM2-204ENST00000540378 DCAF1Q9Y4B6 1507 aa31.48■■■□□ 2.63
LRTM2-204ENST00000540378 SCRIBQ14160 1630 aa31.21■■■□□ 2.59
LRTM2-204ENST00000540378 SHROOM4Q9ULL8 1493 aa31.12■■■□□ 2.57
LRTM2-204ENST00000540378 CC2D2AQ9P2K1 1620 aa30.81■■■□□ 2.52
LRTM2-204ENST00000540378 EIF4G1Q04637 1599 aaKnown RBP30.77■■■□□ 2.52
LRTM2-204ENST00000540378 CECR2Q9BXF3 1484 aa30.72■■■□□ 2.51
LRTM2-204ENST00000540378 NCAPD3P42695 1498 aa29.79■■■□□ 2.36
LRTM2-204ENST00000540378 SMARCA4P51532 1647 aa29.74■■■□□ 2.35
LRTM2-204ENST00000540378 ATAD2BQ9ULI0 1458 aa29.74■■■□□ 2.35
LRTM2-204ENST00000540378 SMARCA2P51531 1590 aa29.67■■■□□ 2.34
LRTM2-204ENST00000540378 BAZ1AQ9NRL2 1556 aaPredicted RBP29.61■■■□□ 2.33
LRTM2-204ENST00000540378 HMGXB3Q12766 1538 aa29.61■■■□□ 2.33
LRTM2-204ENST00000540378 ERCC6Q03468 1493 aa29.48■■■□□ 2.31
LRTM2-204ENST00000540378 BAZ1BQ9UIG0 1483 aaKnown RBP29.48■■■□□ 2.31
LRTM2-204ENST00000540378 PEG3Q9GZU2 1588 aa29.42■■■□□ 2.3
LRTM2-204ENST00000540378 MROH2BQ7Z745 1585 aa29.4■■■□□ 2.3
LRTM2-204ENST00000540378 CUX2O14529 1486 aa29.35■■■□□ 2.29
LRTM2-204ENST00000540378 NESP48681 1621 aa29.34■■■□□ 2.29
LRTM2-204ENST00000540378 DNAJC5Q9H3Z4 198 aa29.17■■■□□ 2.26
LRTM2-204ENST00000540378 LAMC3Q9Y6N6 1575 aa29.13■■■□□ 2.25
LRTM2-204ENST00000540378 WIZO95785 1651 aa29.06■■■□□ 2.24
LRTM2-204ENST00000540378 THOC2Q8NI27 1593 aaKnown RBP29.01■■■□□ 2.24
LRTM2-204ENST00000540378 KIF21AQ7Z4S6 1674 aa28.96■■■□□ 2.23
LRTM2-204ENST00000540378 PDS5BQ9NTI5 1447 aa28.96■■■□□ 2.23
LRTM2-204ENST00000540378 CADPSQ9ULU8 1353 aa28.9■■■□□ 2.22
LRTM2-204ENST00000540378 RSF1Q96T23 1441 aaPredicted RBP28.81■■■□□ 2.2
LRTM2-204ENST00000540378 MRC2Q9UBG0 1479 aa28.72■■■□□ 2.19
LRTM2-204ENST00000540378 TOP2AP11388 1531 aaKnown RBP28.71■■■□□ 2.19
LRTM2-204ENST00000540378 CEP164Q9UPV0 1460 aa28.64■■■□□ 2.17
LRTM2-204ENST00000540378 WDR62O43379 1518 aa28.64■■■□□ 2.17
LRTM2-204ENST00000540378 FANCD2Q9BXW9 1451 aa28.6■■■□□ 2.17
LRTM2-204ENST00000540378 CFTRP13569 1480 aa28.59■■■□□ 2.17
LRTM2-204ENST00000540378 CCDC88BA6NC98 1476 aa28.36■■■□□ 2.13
LRTM2-204ENST00000540378 URB2Q14146 1524 aaKnown RBP28.35■■■□□ 2.13
LRTM2-204ENST00000540378 PRDM2Q13029 1718 aa28.34■■■□□ 2.13
LRTM2-204ENST00000540378 TOPBP1Q92547 1522 aa28.08■■■□□ 2.08
LRTM2-204ENST00000540378 IFT140Q96RY7 1462 aa28.05■■■□□ 2.08
LRTM2-204ENST00000540378 TRIM41Q8WV44 630 aa28.03■■■□□ 2.08
LRTM2-204ENST00000540378 OSCARQ8IYS5 282 aa28■■■□□ 2.07
LRTM2-204ENST00000540378 ZNF608Q9ULD9 1512 aaPredicted RBP28■■■□□ 2.07
LRTM2-204ENST00000540378 ABCC8Q09428 1581 aa27.99■■■□□ 2.07
LRTM2-204ENST00000540378 DNMBPQ6XZF7 1577 aa27.99■■■□□ 2.07
LRTM2-204ENST00000540378 EIF4G3O43432 1585 aaKnown RBP27.87■■■□□ 2.05
LRTM2-204ENST00000540378 TARBP1Q13395 1621 aaKnown RBP27.79■■■□□ 2.04
LRTM2-204ENST00000540378 POLA1P09884 1462 aaPredicted RBP27.79■■■□□ 2.04
LRTM2-204ENST00000540378 AQRO60306 1485 aaKnown RBP eCLIP27.75■■■□□ 2.03
LRTM2-204ENST00000540378 RAD54L2Q9Y4B4 1467 aa27.7■■■□□ 2.02
LRTM2-204ENST00000540378 SUPT5HO00267 1087 aaKnown RBP27.67■■■□□ 2.02
LRTM2-204ENST00000540378 RIMBP3CA6NJZ7 1639 aa27.67■■■□□ 2.02
LRTM2-204ENST00000540378 RIMBP3BA6NNM3 1639 aa27.67■■■□□ 2.02
LRTM2-204ENST00000540378 RIMBP3Q9UFD9 1639 aa27.67■■■□□ 2.02
LRTM2-204ENST00000540378 SOGA1O94964 1423 aa27.66■■■□□ 2.02
LRTM2-204ENST00000540378 FGD5Q6ZNL6 1462 aa27.64■■■□□ 2.02
LRTM2-204ENST00000540378 CHD1O14646 1710 aa27.64■■■□□ 2.01
LRTM2-204ENST00000540378 CUX1P39880 1505 aa27.62■■■□□ 2.01
LRTM2-204ENST00000540378 TDRD9Q8NDG6 1382 aaKnown RBP27.6■■■□□ 2.01
LRTM2-204ENST00000540378 ARHGEF11O15085 1522 aa27.59■■■□□ 2.01
LRTM2-204ENST00000540378 FBLN2P98095 1184 aa27.58■■■□□ 2.01
LRTM2-204ENST00000540378 WDR97A6NE52 1622 aa27.52■■■□□ 2
LRTM2-204ENST00000540378 SNAPC4Q5SXM2 1469 aa27.51■■□□□ 1.99
LRTM2-204ENST00000540378 GRIN2BQ13224 1484 aa27.42■■□□□ 1.98
LRTM2-204ENST00000540378 MAGI1Q96QZ7 1491 aaPredicted RBP27.4■■□□□ 1.98
LRTM2-204ENST00000540378 CYB5RLQ6IPT4 315 aa27.37■■□□□ 1.97
LRTM2-204ENST00000540378 CHMP7Q8WUX9 453 aaPredicted RBP27.37■■□□□ 1.97
LRTM2-204ENST00000540378 PBRM1Q86U86 1689 aa27.33■■□□□ 1.97
LRTM2-204ENST00000540378 GAPVD1Q14C86 1478 aa27.33■■□□□ 1.97
LRTM2-204ENST00000540378 ARAP1Q96P48 1450 aa27.33■■□□□ 1.97
LRTM2-204ENST00000540378 SYNJ1O43426 1573 aa27.32■■□□□ 1.96
LRTM2-204ENST00000540378 SYNJ2O15056 1496 aa27.32■■□□□ 1.96
LRTM2-204ENST00000540378 ABCA10Q8WWZ4 1543 aa27.31■■□□□ 1.96
LRTM2-204ENST00000540378 CLASP1Q7Z460 1538 aa27.3■■□□□ 1.96
LRTM2-204ENST00000540378 ABCA5Q8WWZ7 1642 aa27.28■■□□□ 1.96
LRTM2-204ENST00000540378 WRNQ14191 1432 aaPredicted RBP eCLIP27.23■■□□□ 1.95
LRTM2-204ENST00000540378 TOP2BQ02880 1626 aa27.2■■□□□ 1.95
LRTM2-204ENST00000540378 BIVM-ERCC5R4GMW8 1640 aa27.2■■□□□ 1.95
LRTM2-204ENST00000540378 ADAMTS12P58397 1594 aa27.09■■□□□ 1.93
LRTM2-204ENST00000540378 GRIN2AQ12879 1464 aa27.06■■□□□ 1.92
LRTM2-204ENST00000540378 TRHP20396 242 aaPredicted RBP27.06■■□□□ 1.92
LRTM2-204ENST00000540378 FHAD1B1AJZ9 1412 aa26.99■■□□□ 1.91
LRTM2-204ENST00000540378 CEP170Q5SW79 1584 aa26.97■■□□□ 1.91
LRTM2-204ENST00000540378 ERICH3Q5RHP9 1530 aa26.97■■□□□ 1.91
LRTM2-204ENST00000540378 NUP160Q12769 1436 aa26.96■■□□□ 1.91
LRTM2-204ENST00000540378 ERCC6L2Q5T890 1561 aa26.89■■□□□ 1.9
LRTM2-204ENST00000540378 SHROOM2Q13796 1616 aa26.82■■□□□ 1.88
LRTM2-204ENST00000540378 PRG4Q92954 1404 aaPredicted RBP26.71■■□□□ 1.87
LRTM2-204ENST00000540378 RUSC2Q8N2Y8 1516 aa26.7■■□□□ 1.87
LRTM2-204ENST00000540378 KIF27Q86VH2 1401 aa26.68■■□□□ 1.86
LRTM2-204ENST00000540378 JPH4Q96JJ6 628 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms