RNA–Protein interactions for RNA: ENST00000540216.5

CCDC130-202, Transcript of coiled-coil domain containing 130, humanhuman

TSL 2

Gene CCDC130, Length 995 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC130-202ENST00000540216 NISCHQ9Y2I1 1504 aa32.64■■■□□ 2.82
CCDC130-202ENST00000540216 CCDC180Q9P1Z9 1646 aa29.09■■■□□ 2.25
CCDC130-202ENST00000540216 ABCC9O60706 1549 aa28.41■■■□□ 2.14
CCDC130-202ENST00000540216 RB1CC1Q8TDY2 1594 aa27.38■■□□□ 1.97
CCDC130-202ENST00000540216 NACADO15069 1562 aa27.35■■□□□ 1.97
CCDC130-202ENST00000540216 MYO15BQ96JP2 1530 aa27.22■■□□□ 1.95
CCDC130-202ENST00000540216 ZCCHC6Q5VYS8 1495 aaKnown RBP27.2■■□□□ 1.95
CCDC130-202ENST00000540216 DCAF8L2P0C7V8 631 aa27.18■■□□□ 1.94
CCDC130-202ENST00000540216 DCAF1Q9Y4B6 1507 aa27.06■■□□□ 1.92
CCDC130-202ENST00000540216 UNC13AQ9UPW8 1703 aa26.7■■□□□ 1.87
CCDC130-202ENST00000540216 BICRAQ9NZM4 1560 aa26.51■■□□□ 1.83
CCDC130-202ENST00000540216 PABPN1Q86U42 306 aaKnown RBP eCLIP26.49■■□□□ 1.83
CCDC130-202ENST00000540216 SCRIBQ14160 1630 aa26.47■■□□□ 1.83
CCDC130-202ENST00000540216 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
CCDC130-202ENST00000540216 DNAJC5BQ9UF47 199 aa26.05■■□□□ 1.76
CCDC130-202ENST00000540216 EIF4G1Q04637 1599 aaKnown RBP25.83■■□□□ 1.73
CCDC130-202ENST00000540216 CC2D2AQ9P2K1 1620 aa25.73■■□□□ 1.71
CCDC130-202ENST00000540216 CECR2Q9BXF3 1484 aa25.56■■□□□ 1.68
CCDC130-202ENST00000540216 SMARCA4P51532 1647 aa25.34■■□□□ 1.65
CCDC130-202ENST00000540216 BAZ1AQ9NRL2 1556 aaPredicted RBP25.33■■□□□ 1.65
CCDC130-202ENST00000540216 SMARCA2P51531 1590 aa25.22■■□□□ 1.63
CCDC130-202ENST00000540216 NCAPD3P42695 1498 aa25.21■■□□□ 1.63
CCDC130-202ENST00000540216 ATAD2BQ9ULI0 1458 aa25.21■■□□□ 1.63
CCDC130-202ENST00000540216 MROH2BQ7Z745 1585 aa25.13■■□□□ 1.61
CCDC130-202ENST00000540216 PEG3Q9GZU2 1588 aa25.13■■□□□ 1.61
CCDC130-202ENST00000540216 HMGXB3Q12766 1538 aa25.12■■□□□ 1.61
CCDC130-202ENST00000540216 BAZ1BQ9UIG0 1483 aaKnown RBP25.01■■□□□ 1.59
CCDC130-202ENST00000540216 WIZO95785 1651 aa24.84■■□□□ 1.57
CCDC130-202ENST00000540216 RSF1Q96T23 1441 aaPredicted RBP24.83■■□□□ 1.57
CCDC130-202ENST00000540216 TOP2AP11388 1531 aaKnown RBP24.63■■□□□ 1.53
CCDC130-202ENST00000540216 LAMC3Q9Y6N6 1575 aa24.58■■□□□ 1.52
CCDC130-202ENST00000540216 NESP48681 1621 aa24.55■■□□□ 1.52
CCDC130-202ENST00000540216 ERCC6Q03468 1493 aa24.52■■□□□ 1.52
CCDC130-202ENST00000540216 CADPSQ9ULU8 1353 aa24.46■■□□□ 1.51
CCDC130-202ENST00000540216 PDS5BQ9NTI5 1447 aa24.4■■□□□ 1.5
CCDC130-202ENST00000540216 CUX2O14529 1486 aa24.32■■□□□ 1.48
CCDC130-202ENST00000540216 CFTRP13569 1480 aa24.32■■□□□ 1.48
CCDC130-202ENST00000540216 CCDC88BA6NC98 1476 aa24.3■■□□□ 1.48
CCDC130-202ENST00000540216 KIF21AQ7Z4S6 1674 aa24.29■■□□□ 1.48
CCDC130-202ENST00000540216 THOC2Q8NI27 1593 aaKnown RBP24.25■■□□□ 1.47
CCDC130-202ENST00000540216 FANCD2Q9BXW9 1451 aa24.18■■□□□ 1.46
CCDC130-202ENST00000540216 CEP164Q9UPV0 1460 aa24.18■■□□□ 1.46
CCDC130-202ENST00000540216 PRDM2Q13029 1718 aa24.16■■□□□ 1.46
CCDC130-202ENST00000540216 MRC2Q9UBG0 1479 aa24.15■■□□□ 1.46
CCDC130-202ENST00000540216 SUPT5HO00267 1087 aaKnown RBP24.1■■□□□ 1.45
CCDC130-202ENST00000540216 WDR62O43379 1518 aa24.08■■□□□ 1.45
CCDC130-202ENST00000540216 URB2Q14146 1524 aaKnown RBP23.93■■□□□ 1.42
CCDC130-202ENST00000540216 ABCC8Q09428 1581 aa23.84■■□□□ 1.41
CCDC130-202ENST00000540216 TOPBP1Q92547 1522 aa23.79■■□□□ 1.4
CCDC130-202ENST00000540216 DNMBPQ6XZF7 1577 aa23.78■■□□□ 1.4
CCDC130-202ENST00000540216 IFT140Q96RY7 1462 aa23.68■■□□□ 1.38
CCDC130-202ENST00000540216 CUX1P39880 1505 aa23.59■■□□□ 1.37
CCDC130-202ENST00000540216 POLA1P09884 1462 aaPredicted RBP23.58■■□□□ 1.37
CCDC130-202ENST00000540216 DNAJC5Q9H3Z4 198 aa23.55■■□□□ 1.36
CCDC130-202ENST00000540216 TARBP1Q13395 1621 aaKnown RBP23.54■■□□□ 1.36
CCDC130-202ENST00000540216 FGD5Q6ZNL6 1462 aa23.52■■□□□ 1.36
CCDC130-202ENST00000540216 ZNF608Q9ULD9 1512 aaPredicted RBP23.52■■□□□ 1.36
CCDC130-202ENST00000540216 SOGA1O94964 1423 aa23.48■■□□□ 1.35
CCDC130-202ENST00000540216 EIF4G3O43432 1585 aaKnown RBP23.46■■□□□ 1.35
CCDC130-202ENST00000540216 RAD54L2Q9Y4B4 1467 aa23.43■■□□□ 1.34
CCDC130-202ENST00000540216 WRNQ14191 1432 aaPredicted RBP eCLIP23.43■■□□□ 1.34
CCDC130-202ENST00000540216 WDR97A6NE52 1622 aa23.43■■□□□ 1.34
CCDC130-202ENST00000540216 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
CCDC130-202ENST00000540216 TOP2BQ02880 1626 aa23.4■■□□□ 1.34
CCDC130-202ENST00000540216 AQRO60306 1485 aaKnown RBP eCLIP23.37■■□□□ 1.332e-9■■■■□ 24.2
CCDC130-202ENST00000540216 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
CCDC130-202ENST00000540216 TDRD9Q8NDG6 1382 aaKnown RBP23.32■■□□□ 1.32
CCDC130-202ENST00000540216 ABCA10Q8WWZ4 1543 aa23.32■■□□□ 1.32
CCDC130-202ENST00000540216 OSCARQ8IYS5 282 aa23.25■■□□□ 1.31
CCDC130-202ENST00000540216 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
CCDC130-202ENST00000540216 ABCA5Q8WWZ7 1642 aa23.22■■□□□ 1.31
CCDC130-202ENST00000540216 GAPVD1Q14C86 1478 aa23.22■■□□□ 1.31
CCDC130-202ENST00000540216 MAGI1Q96QZ7 1491 aaPredicted RBP23.2■■□□□ 1.3
CCDC130-202ENST00000540216 SNAPC4Q5SXM2 1469 aa23.18■■□□□ 1.3
CCDC130-202ENST00000540216 PBRM1Q86U86 1689 aa23.17■■□□□ 1.3
CCDC130-202ENST00000540216 CHD1O14646 1710 aa23.15■■□□□ 1.3
CCDC130-202ENST00000540216 SYNJ2O15056 1496 aa23.1■■□□□ 1.29
CCDC130-202ENST00000540216 FBLN2P98095 1184 aa23.08■■□□□ 1.29
CCDC130-202ENST00000540216 ERICH3Q5RHP9 1530 aa23.05■■□□□ 1.28
CCDC130-202ENST00000540216 CHMP7Q8WUX9 453 aaPredicted RBP23.04■■□□□ 1.28
CCDC130-202ENST00000540216 ADAMTS12P58397 1594 aa23.01■■□□□ 1.27
CCDC130-202ENST00000540216 FHAD1B1AJZ9 1412 aa22.97■■□□□ 1.27
CCDC130-202ENST00000540216 KIF27Q86VH2 1401 aa22.96■■□□□ 1.27
CCDC130-202ENST00000540216 CLASP1Q7Z460 1538 aa22.93■■□□□ 1.26
CCDC130-202ENST00000540216 GRIN2AQ12879 1464 aa22.93■■□□□ 1.26
CCDC130-202ENST00000540216 ARHGEF11O15085 1522 aa22.89■■□□□ 1.26
CCDC130-202ENST00000540216 RIMBP3CA6NJZ7 1639 aa22.89■■□□□ 1.25
CCDC130-202ENST00000540216 RIMBP3BA6NNM3 1639 aa22.89■■□□□ 1.25
CCDC130-202ENST00000540216 RIMBP3Q9UFD9 1639 aa22.89■■□□□ 1.25
CCDC130-202ENST00000540216 CUL7Q14999 1698 aa22.84■■□□□ 1.25
CCDC130-202ENST00000540216 NUP160Q12769 1436 aa22.84■■□□□ 1.25
CCDC130-202ENST00000540216 IGF1RP08069 1367 aa22.83■■□□□ 1.25
CCDC130-202ENST00000540216 TRIM41Q8WV44 630 aa22.81■■□□□ 1.24
CCDC130-202ENST00000540216 CEP170Q5SW79 1584 aa22.8■■□□□ 1.24
CCDC130-202ENST00000540216 CARMIL1Q5VZK9 1371 aa22.71■■□□□ 1.23
CCDC130-202ENST00000540216 ARAP1Q96P48 1450 aa22.69■■□□□ 1.22
CCDC130-202ENST00000540216 SHROOM2Q13796 1616 aa22.68■■□□□ 1.22
CCDC130-202ENST00000540216 RUSC2Q8N2Y8 1516 aa22.67■■□□□ 1.22
CCDC130-202ENST00000540216 CYB5RLQ6IPT4 315 aa22.62■■□□□ 1.21
CCDC130-202ENST00000540216 KIAA0586Q9BVV6 1533 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms