RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-222ENST00000540183 NISCHQ9Y2I1 1504 aa36.01■■■■□ 3.36
SEMA4D-222ENST00000540183 ABCC9O60706 1549 aa32.48■■■□□ 2.79
SEMA4D-222ENST00000540183 CCDC180Q9P1Z9 1646 aa32.38■■■□□ 2.77
SEMA4D-222ENST00000540183 RB1CC1Q8TDY2 1594 aa30.83■■■□□ 2.53
SEMA4D-222ENST00000540183 NACADO15069 1562 aa30.57■■■□□ 2.48
SEMA4D-222ENST00000540183 DNAJC5BQ9UF47 199 aa30.56■■■□□ 2.48
SEMA4D-222ENST00000540183 DCAF8L2P0C7V8 631 aa30.43■■■□□ 2.46
SEMA4D-222ENST00000540183 UNC13AQ9UPW8 1703 aa30.34■■■□□ 2.45
SEMA4D-222ENST00000540183 PABPN1Q86U42 306 aaKnown RBP eCLIP30.21■■■□□ 2.43
SEMA4D-222ENST00000540183 MYO15BQ96JP2 1530 aa30.06■■■□□ 2.4
SEMA4D-222ENST00000540183 BICRAQ9NZM4 1560 aa30.02■■■□□ 2.4
SEMA4D-222ENST00000540183 ZCCHC6Q5VYS8 1495 aaKnown RBP29.83■■■□□ 2.37
SEMA4D-222ENST00000540183 DCAF1Q9Y4B6 1507 aa29.68■■■□□ 2.34
SEMA4D-222ENST00000540183 SCRIBQ14160 1630 aa29.57■■■□□ 2.32
SEMA4D-222ENST00000540183 SHROOM4Q9ULL8 1493 aa29.42■■■□□ 2.3
SEMA4D-222ENST00000540183 CC2D2AQ9P2K1 1620 aa29.36■■■□□ 2.29
SEMA4D-222ENST00000540183 EIF4G1Q04637 1599 aaKnown RBP29.24■■■□□ 2.27
SEMA4D-222ENST00000540183 CECR2Q9BXF3 1484 aa29.22■■■□□ 2.27
SEMA4D-222ENST00000540183 NCAPD3P42695 1498 aa28.2■■■□□ 2.1
SEMA4D-222ENST00000540183 SMARCA4P51532 1647 aa28.16■■■□□ 2.1
SEMA4D-222ENST00000540183 ATAD2BQ9ULI0 1458 aa28.15■■■□□ 2.1
SEMA4D-222ENST00000540183 SMARCA2P51531 1590 aa28.04■■■□□ 2.08
SEMA4D-222ENST00000540183 HMGXB3Q12766 1538 aa28.02■■■□□ 2.08
SEMA4D-222ENST00000540183 DNAJC5Q9H3Z4 198 aa28.01■■■□□ 2.07
SEMA4D-222ENST00000540183 ERCC6Q03468 1493 aa27.99■■■□□ 2.07
SEMA4D-222ENST00000540183 BAZ1AQ9NRL2 1556 aaPredicted RBP27.94■■■□□ 2.06
SEMA4D-222ENST00000540183 CUX2O14529 1486 aa27.93■■■□□ 2.06
SEMA4D-222ENST00000540183 NESP48681 1621 aa27.92■■■□□ 2.06
SEMA4D-222ENST00000540183 BAZ1BQ9UIG0 1483 aaKnown RBP27.87■■■□□ 2.05
SEMA4D-222ENST00000540183 PEG3Q9GZU2 1588 aa27.82■■■□□ 2.04
SEMA4D-222ENST00000540183 MROH2BQ7Z745 1585 aa27.81■■■□□ 2.04
SEMA4D-222ENST00000540183 THOC2Q8NI27 1593 aaKnown RBP27.65■■■□□ 2.02
SEMA4D-222ENST00000540183 KIF21AQ7Z4S6 1674 aa27.62■■■□□ 2.01
SEMA4D-222ENST00000540183 LAMC3Q9Y6N6 1575 aa27.61■■■□□ 2.01
SEMA4D-222ENST00000540183 WIZO95785 1651 aa27.52■■■□□ 2
SEMA4D-222ENST00000540183 PDS5BQ9NTI5 1447 aa27.4■■□□□ 1.98
SEMA4D-222ENST00000540183 CADPSQ9ULU8 1353 aa27.34■■□□□ 1.97
SEMA4D-222ENST00000540183 MRC2Q9UBG0 1479 aa27.23■■□□□ 1.95
SEMA4D-222ENST00000540183 WDR62O43379 1518 aa27.18■■□□□ 1.94
SEMA4D-222ENST00000540183 RSF1Q96T23 1441 aaPredicted RBP27.14■■□□□ 1.93
SEMA4D-222ENST00000540183 CEP164Q9UPV0 1460 aa27.11■■□□□ 1.93
SEMA4D-222ENST00000540183 TOP2AP11388 1531 aaKnown RBP27.08■■□□□ 1.93
SEMA4D-222ENST00000540183 FANCD2Q9BXW9 1451 aa27.07■■□□□ 1.92
SEMA4D-222ENST00000540183 CFTRP13569 1480 aa27.03■■□□□ 1.92
SEMA4D-222ENST00000540183 PRDM2Q13029 1718 aa26.92■■□□□ 1.9
SEMA4D-222ENST00000540183 URB2Q14146 1524 aaKnown RBP26.91■■□□□ 1.9
SEMA4D-222ENST00000540183 TRIM41Q8WV44 630 aa26.82■■□□□ 1.88
SEMA4D-222ENST00000540183 CCDC88BA6NC98 1476 aa26.77■■□□□ 1.88
SEMA4D-222ENST00000540183 OSCARQ8IYS5 282 aa26.61■■□□□ 1.85
SEMA4D-222ENST00000540183 ZNF608Q9ULD9 1512 aaPredicted RBP26.6■■□□□ 1.85
SEMA4D-222ENST00000540183 TOPBP1Q92547 1522 aa26.58■■□□□ 1.85
SEMA4D-222ENST00000540183 IFT140Q96RY7 1462 aa26.54■■□□□ 1.84
SEMA4D-222ENST00000540183 DNMBPQ6XZF7 1577 aa26.47■■□□□ 1.83
SEMA4D-222ENST00000540183 EIF4G3O43432 1585 aaKnown RBP26.46■■□□□ 1.83
SEMA4D-222ENST00000540183 RIMBP3CA6NJZ7 1639 aa26.44■■□□□ 1.82
SEMA4D-222ENST00000540183 RIMBP3BA6NNM3 1639 aa26.44■■□□□ 1.82
SEMA4D-222ENST00000540183 RIMBP3Q9UFD9 1639 aa26.44■■□□□ 1.82
SEMA4D-222ENST00000540183 ABCC8Q09428 1581 aa26.41■■□□□ 1.82
SEMA4D-222ENST00000540183 TARBP1Q13395 1621 aaKnown RBP26.39■■□□□ 1.81
SEMA4D-222ENST00000540183 CHD1O14646 1710 aa26.36■■□□□ 1.81
SEMA4D-222ENST00000540183 AQRO60306 1485 aaKnown RBP eCLIP26.32■■□□□ 1.8
SEMA4D-222ENST00000540183 POLA1P09884 1462 aaPredicted RBP26.3■■□□□ 1.8
SEMA4D-222ENST00000540183 ARHGEF11O15085 1522 aa26.29■■□□□ 1.8
SEMA4D-222ENST00000540183 RAD54L2Q9Y4B4 1467 aa26.24■■□□□ 1.79
SEMA4D-222ENST00000540183 SOGA1O94964 1423 aa26.14■■□□□ 1.77
SEMA4D-222ENST00000540183 FGD5Q6ZNL6 1462 aa26.13■■□□□ 1.77
SEMA4D-222ENST00000540183 TDRD9Q8NDG6 1382 aaKnown RBP26.13■■□□□ 1.77
SEMA4D-222ENST00000540183 FBLN2P98095 1184 aa26.13■■□□□ 1.77
SEMA4D-222ENST00000540183 CUX1P39880 1505 aa26.13■■□□□ 1.77
SEMA4D-222ENST00000540183 CYB5RLQ6IPT4 315 aa26.06■■□□□ 1.76
SEMA4D-222ENST00000540183 SNAPC4Q5SXM2 1469 aa26.05■■□□□ 1.76
SEMA4D-222ENST00000540183 ARAP1Q96P48 1450 aa26.04■■□□□ 1.76
SEMA4D-222ENST00000540183 WDR97A6NE52 1622 aa26.03■■□□□ 1.76
SEMA4D-222ENST00000540183 PBRM1Q86U86 1689 aa25.96■■□□□ 1.75
SEMA4D-222ENST00000540183 CLASP1Q7Z460 1538 aa25.94■■□□□ 1.74
SEMA4D-222ENST00000540183 GRIN2BQ13224 1484 aa25.91■■□□□ 1.74
SEMA4D-222ENST00000540183 SUPT5HO00267 1087 aaKnown RBP25.91■■□□□ 1.74
SEMA4D-222ENST00000540183 MAGI1Q96QZ7 1491 aaPredicted RBP25.91■■□□□ 1.74
SEMA4D-222ENST00000540183 SYNJ1O43426 1573 aa25.89■■□□□ 1.73
SEMA4D-222ENST00000540183 CHMP7Q8WUX9 453 aaPredicted RBP25.87■■□□□ 1.73
SEMA4D-222ENST00000540183 SYNJ2O15056 1496 aa25.84■■□□□ 1.73
SEMA4D-222ENST00000540183 ABCA5Q8WWZ7 1642 aa25.83■■□□□ 1.73
SEMA4D-222ENST00000540183 GAPVD1Q14C86 1478 aa25.83■■□□□ 1.73
SEMA4D-222ENST00000540183 TRHP20396 242 aaPredicted RBP25.79■■□□□ 1.72
SEMA4D-222ENST00000540183 ABCA10Q8WWZ4 1543 aa25.78■■□□□ 1.72
SEMA4D-222ENST00000540183 BIVM-ERCC5R4GMW8 1640 aa25.7■■□□□ 1.71
SEMA4D-222ENST00000540183 TOP2BQ02880 1626 aa25.66■■□□□ 1.7
SEMA4D-222ENST00000540183 ADAMTS12P58397 1594 aa25.64■■□□□ 1.69
SEMA4D-222ENST00000540183 WRNQ14191 1432 aaPredicted RBP eCLIP25.63■■□□□ 1.69
SEMA4D-222ENST00000540183 ERCC6L2Q5T890 1561 aa25.61■■□□□ 1.69
SEMA4D-222ENST00000540183 GRIN2AQ12879 1464 aa25.6■■□□□ 1.69
SEMA4D-222ENST00000540183 CEP170Q5SW79 1584 aa25.59■■□□□ 1.69
SEMA4D-222ENST00000540183 NUP160Q12769 1436 aa25.5■■□□□ 1.67
SEMA4D-222ENST00000540183 FHAD1B1AJZ9 1412 aa25.47■■□□□ 1.67
SEMA4D-222ENST00000540183 SHROOM2Q13796 1616 aa25.47■■□□□ 1.67
SEMA4D-222ENST00000540183 ERICH3Q5RHP9 1530 aa25.46■■□□□ 1.67
SEMA4D-222ENST00000540183 RUSC2Q8N2Y8 1516 aa25.28■■□□□ 1.64
SEMA4D-222ENST00000540183 PRG4Q92954 1404 aaPredicted RBP25.28■■□□□ 1.64
SEMA4D-222ENST00000540183 KIF13AQ9H1H9 1805 aa25.26■■□□□ 1.63
SEMA4D-222ENST00000540183 JPH4Q96JJ6 628 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms