RNA–Protein interactions for RNA: ENST00000539746.1

VTN-202, Transcript of vitronectin, humanhuman

TSL 2

Gene VTN, Length 609 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTN-202ENST00000539746 NISCHQ9Y2I1 1504 aa26.9■■□□□ 1.9
VTN-202ENST00000539746 CCDC180Q9P1Z9 1646 aa23.73■■□□□ 1.39
VTN-202ENST00000539746 ZCCHC6Q5VYS8 1495 aaKnown RBP22.55■■□□□ 1.2
VTN-202ENST00000539746 DCAF1Q9Y4B6 1507 aa22.46■■□□□ 1.19
VTN-202ENST00000539746 ABCC9O60706 1549 aa22.36■■□□□ 1.17
VTN-202ENST00000539746 MYO15BQ96JP2 1530 aa22.36■■□□□ 1.17
VTN-202ENST00000539746 NACADO15069 1562 aa22.2■■□□□ 1.14
VTN-202ENST00000539746 DCAF8L2P0C7V8 631 aa22.19■■□□□ 1.14
VTN-202ENST00000539746 RB1CC1Q8TDY2 1594 aa22.05■■□□□ 1.12
VTN-202ENST00000539746 SCRIBQ14160 1630 aa21.51■■□□□ 1.03
VTN-202ENST00000539746 SHROOM4Q9ULL8 1493 aa21.47■■□□□ 1.03
VTN-202ENST00000539746 UNC13AQ9UPW8 1703 aa21.19■□□□□ 0.98
VTN-202ENST00000539746 BICRAQ9NZM4 1560 aa21.06■□□□□ 0.96
VTN-202ENST00000539746 PABPN1Q86U42 306 aaKnown RBP eCLIP20.95■□□□□ 0.94
VTN-202ENST00000539746 BAZ1AQ9NRL2 1556 aaPredicted RBP20.93■□□□□ 0.94
VTN-202ENST00000539746 SMARCA4P51532 1647 aa20.71■□□□□ 0.91
VTN-202ENST00000539746 RSF1Q96T23 1441 aaPredicted RBP20.7■□□□□ 0.9
VTN-202ENST00000539746 CECR2Q9BXF3 1484 aa20.69■□□□□ 0.9
VTN-202ENST00000539746 SUPT5HO00267 1087 aaKnown RBP20.67■□□□□ 0.9
VTN-202ENST00000539746 SMARCA2P51531 1590 aa20.62■□□□□ 0.89
VTN-202ENST00000539746 MROH2BQ7Z745 1585 aa20.61■□□□□ 0.89
VTN-202ENST00000539746 EIF4G1Q04637 1599 aaKnown RBP20.59■□□□□ 0.89
VTN-202ENST00000539746 PEG3Q9GZU2 1588 aa20.58■□□□□ 0.88
VTN-202ENST00000539746 ATAD2BQ9ULI0 1458 aa20.44■□□□□ 0.86
VTN-202ENST00000539746 TOP2AP11388 1531 aaKnown RBP20.42■□□□□ 0.86
VTN-202ENST00000539746 NCAPD3P42695 1498 aa20.41■□□□□ 0.86
VTN-202ENST00000539746 HMGXB3Q12766 1538 aa20.41■□□□□ 0.86
VTN-202ENST00000539746 BAZ1BQ9UIG0 1483 aaKnown RBP20.4■□□□□ 0.86
VTN-202ENST00000539746 WIZO95785 1651 aa20.38■□□□□ 0.85
VTN-202ENST00000539746 CC2D2AQ9P2K1 1620 aa20.29■□□□□ 0.84
VTN-202ENST00000539746 CCDC88BA6NC98 1476 aa20.08■□□□□ 0.81
VTN-202ENST00000539746 CADPSQ9ULU8 1353 aa19.85■□□□□ 0.77
VTN-202ENST00000539746 CFTRP13569 1480 aa19.85■□□□□ 0.77
VTN-202ENST00000539746 LAMC3Q9Y6N6 1575 aa19.81■□□□□ 0.76
VTN-202ENST00000539746 PDS5BQ9NTI5 1447 aa19.74■□□□□ 0.75
VTN-202ENST00000539746 PRDM2Q13029 1718 aa19.73■□□□□ 0.75
VTN-202ENST00000539746 DNAJC5BQ9UF47 199 aa19.68■□□□□ 0.74
VTN-202ENST00000539746 CHIC1Q5VXU3 224 aa19.67■□□□□ 0.74
VTN-202ENST00000539746 TRIM41Q8WV44 630 aa19.66■□□□□ 0.74
VTN-202ENST00000539746 ABCC8Q09428 1581 aa19.62■□□□□ 0.73
VTN-202ENST00000539746 WRNQ14191 1432 aaPredicted RBP eCLIP19.61■□□□□ 0.73
VTN-202ENST00000539746 FANCD2Q9BXW9 1451 aa19.59■□□□□ 0.73
VTN-202ENST00000539746 CEP164Q9UPV0 1460 aa19.56■□□□□ 0.72
VTN-202ENST00000539746 EEA1Q15075 1411 aa19.46■□□□□ 0.71
VTN-202ENST00000539746 TOP2BQ02880 1626 aa19.46■□□□□ 0.71
VTN-202ENST00000539746 NESP48681 1621 aa19.44■□□□□ 0.7
VTN-202ENST00000539746 ERCC6Q03468 1493 aa19.44■□□□□ 0.7
VTN-202ENST00000539746 BIVM-ERCC5R4GMW8 1640 aa19.42■□□□□ 0.7
VTN-202ENST00000539746 DNMBPQ6XZF7 1577 aa19.41■□□□□ 0.7
VTN-202ENST00000539746 MRC2Q9UBG0 1479 aa19.37■□□□□ 0.69
VTN-202ENST00000539746 SYNJ1O43426 1573 aa19.34■□□□□ 0.69
VTN-202ENST00000539746 CUX1P39880 1505 aa19.33■□□□□ 0.68
VTN-202ENST00000539746 TOPBP1Q92547 1522 aa19.31■□□□□ 0.68
VTN-202ENST00000539746 KIF21AQ7Z4S6 1674 aa19.28■□□□□ 0.68
VTN-202ENST00000539746 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
VTN-202ENST00000539746 WDR62O43379 1518 aa19.24■□□□□ 0.67
VTN-202ENST00000539746 FGD5Q6ZNL6 1462 aa19.22■□□□□ 0.67
VTN-202ENST00000539746 URB2Q14146 1524 aaKnown RBP19.22■□□□□ 0.67
VTN-202ENST00000539746 WDR97A6NE52 1622 aa19.19■□□□□ 0.66
VTN-202ENST00000539746 SOGA1O94964 1423 aa19.18■□□□□ 0.66
VTN-202ENST00000539746 POLA1P09884 1462 aaPredicted RBP19.17■□□□□ 0.66
VTN-202ENST00000539746 IFT140Q96RY7 1462 aa19.16■□□□□ 0.66
VTN-202ENST00000539746 ABCA10Q8WWZ4 1543 aa19.16■□□□□ 0.66
VTN-202ENST00000539746 CSRNP3Q8WYN3 585 aa19.13■□□□□ 0.65
VTN-202ENST00000539746 THOC2Q8NI27 1593 aaKnown RBP19.11■□□□□ 0.65
VTN-202ENST00000539746 CUX2O14529 1486 aa19.09■□□□□ 0.65
VTN-202ENST00000539746 FAM9AQ8IZU1 332 aaPredicted RBP19.01■□□□□ 0.63
VTN-202ENST00000539746 ERICH3Q5RHP9 1530 aa19■□□□□ 0.63
VTN-202ENST00000539746 GOLGA3Q08378 1498 aa18.99■□□□□ 0.63
VTN-202ENST00000539746 KIF21BO75037 1637 aa18.99■□□□□ 0.63
VTN-202ENST00000539746 TARBP1Q13395 1621 aaKnown RBP18.99■□□□□ 0.63
VTN-202ENST00000539746 GAPVD1Q14C86 1478 aa18.98■□□□□ 0.63
VTN-202ENST00000539746 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
VTN-202ENST00000539746 CUL7Q14999 1698 aa18.97■□□□□ 0.63
VTN-202ENST00000539746 GRIN2BQ13224 1484 aa18.94■□□□□ 0.62
VTN-202ENST00000539746 ABCA5Q8WWZ7 1642 aa18.93■□□□□ 0.62
VTN-202ENST00000539746 IGF1RP08069 1367 aa18.92■□□□□ 0.62
VTN-202ENST00000539746 PRXQ9BXM0 1461 aa18.9■□□□□ 0.62
VTN-202ENST00000539746 CARMIL1Q5VZK9 1371 aa18.9■□□□□ 0.62
VTN-202ENST00000539746 RAPGEF2Q9Y4G8 1499 aa18.9■□□□□ 0.62
VTN-202ENST00000539746 TDRD9Q8NDG6 1382 aaKnown RBP18.88■□□□□ 0.61
VTN-202ENST00000539746 RUSC2Q8N2Y8 1516 aa18.86■□□□□ 0.61
VTN-202ENST00000539746 TNIKQ9UKE5 1360 aa18.86■□□□□ 0.61
VTN-202ENST00000539746 UBTFP17480 764 aaKnown RBP18.86■□□□□ 0.61
VTN-202ENST00000539746 MAGI1Q96QZ7 1491 aaPredicted RBP18.85■□□□□ 0.61
VTN-202ENST00000539746 FHAD1B1AJZ9 1412 aa18.84■□□□□ 0.61
VTN-202ENST00000539746 EIF4G3O43432 1585 aaKnown RBP18.81■□□□□ 0.6
VTN-202ENST00000539746 PBRM1Q86U86 1689 aa18.79■□□□□ 0.6
VTN-202ENST00000539746 AQRO60306 1485 aaKnown RBP eCLIP18.78■□□□□ 0.6
VTN-202ENST00000539746 ZNF608Q9ULD9 1512 aaPredicted RBP18.74■□□□□ 0.59
VTN-202ENST00000539746 ADAMTS12P58397 1594 aa18.72■□□□□ 0.59
VTN-202ENST00000539746 SYNJ2O15056 1496 aa18.72■□□□□ 0.59
VTN-202ENST00000539746 LOC105371045A0A1W2PR82 267 aa18.72■□□□□ 0.59
VTN-202ENST00000539746 CHMP7Q8WUX9 453 aaPredicted RBP18.7■□□□□ 0.58
VTN-202ENST00000539746 SNAPC4Q5SXM2 1469 aa18.7■□□□□ 0.58
VTN-202ENST00000539746 CEP162Q5TB80 1403 aa18.66■□□□□ 0.58
VTN-202ENST00000539746 GRIN2AQ12879 1464 aa18.63■□□□□ 0.57
VTN-202ENST00000539746 CLIP1P30622 1438 aa18.62■□□□□ 0.57
VTN-202ENST00000539746 EFCAB5A4FU69 1503 aa18.61■□□□□ 0.57
VTN-202ENST00000539746 CTTNBP2Q8WZ74 1663 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms