RNA–Protein interactions for RNA: ENST00000539611.1

ARF3-206, Transcript of ADP ribosylation factor 3, humanhuman

TSL 5

Gene ARF3, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARF3-206ENST00000539611 NISCHQ9Y2I1 1504 aa52.1■■■■■ 5.93
ARF3-206ENST00000539611 CCDC180Q9P1Z9 1646 aa46.29■■■■■ 5
ARF3-206ENST00000539611 ABCC9O60706 1549 aa45.35■■■■■ 4.85
ARF3-206ENST00000539611 RB1CC1Q8TDY2 1594 aa43.58■■■■■ 4.57
ARF3-206ENST00000539611 NACADO15069 1562 aa43.55■■■■■ 4.56
ARF3-206ENST00000539611 DCAF8L2P0C7V8 631 aa43.45■■■■■ 4.55
ARF3-206ENST00000539611 ZCCHC6Q5VYS8 1495 aaKnown RBP43.4■■■■■ 4.54
ARF3-206ENST00000539611 MYO15BQ96JP2 1530 aa43.32■■■■■ 4.53
ARF3-206ENST00000539611 DCAF1Q9Y4B6 1507 aa43.12■■■■■ 4.49
ARF3-206ENST00000539611 UNC13AQ9UPW8 1703 aa42.59■■■■■ 4.41
ARF3-206ENST00000539611 PABPN1Q86U42 306 aaKnown RBP eCLIP42.38■■■■■ 4.37
ARF3-206ENST00000539611 BICRAQ9NZM4 1560 aa42.34■■■■■ 4.37
ARF3-206ENST00000539611 SCRIBQ14160 1630 aa42.23■■■■■ 4.35
ARF3-206ENST00000539611 SHROOM4Q9ULL8 1493 aa41.85■■■■■ 4.29
ARF3-206ENST00000539611 DNAJC5BQ9UF47 199 aa41.74■■■■■ 4.27
ARF3-206ENST00000539611 EIF4G1Q04637 1599 aaKnown RBP41.19■■■■■ 4.18
ARF3-206ENST00000539611 CC2D2AQ9P2K1 1620 aa41.02■■■■■ 4.16
ARF3-206ENST00000539611 CECR2Q9BXF3 1484 aa40.76■■■■■ 4.12
ARF3-206ENST00000539611 SMARCA4P51532 1647 aa40.42■■■■■ 4.06
ARF3-206ENST00000539611 BAZ1AQ9NRL2 1556 aaPredicted RBP40.35■■■■■ 4.05
ARF3-206ENST00000539611 ATAD2BQ9ULI0 1458 aa40.24■■■■■ 4.03
ARF3-206ENST00000539611 NCAPD3P42695 1498 aa40.23■■■■■ 4.03
ARF3-206ENST00000539611 MROH2BQ7Z745 1585 aa40.16■■■■■ 4.02
ARF3-206ENST00000539611 SMARCA2P51531 1590 aa40.14■■■■■ 4.02
ARF3-206ENST00000539611 PEG3Q9GZU2 1588 aa40.06■■■■■ 4
ARF3-206ENST00000539611 HMGXB3Q12766 1538 aa40■■■■□ 3.99
ARF3-206ENST00000539611 BAZ1BQ9UIG0 1483 aaKnown RBP39.86■■■■□ 3.97
ARF3-206ENST00000539611 RSF1Q96T23 1441 aaPredicted RBP39.69■■■■□ 3.94
ARF3-206ENST00000539611 WIZO95785 1651 aa39.69■■■■□ 3.94
ARF3-206ENST00000539611 TOP2AP11388 1531 aaKnown RBP39.28■■■■□ 3.88
ARF3-206ENST00000539611 NESP48681 1621 aa39.25■■■■□ 3.87
ARF3-206ENST00000539611 LAMC3Q9Y6N6 1575 aa39.12■■■■□ 3.85
ARF3-206ENST00000539611 ERCC6Q03468 1493 aa39.05■■■■□ 3.84
ARF3-206ENST00000539611 CADPSQ9ULU8 1353 aa39.04■■■■□ 3.84
ARF3-206ENST00000539611 PDS5BQ9NTI5 1447 aa38.86■■■■□ 3.81
ARF3-206ENST00000539611 CCDC88BA6NC98 1476 aa38.84■■■■□ 3.81
ARF3-206ENST00000539611 CFTRP13569 1480 aa38.81■■■■□ 3.8
ARF3-206ENST00000539611 KIF21AQ7Z4S6 1674 aa38.74■■■■□ 3.79
ARF3-206ENST00000539611 CUX2O14529 1486 aa38.69■■■■□ 3.78
ARF3-206ENST00000539611 THOC2Q8NI27 1593 aaKnown RBP38.66■■■■□ 3.78
ARF3-206ENST00000539611 SUPT5HO00267 1087 aaKnown RBP38.58■■■■□ 3.77
ARF3-206ENST00000539611 FANCD2Q9BXW9 1451 aa38.56■■■■□ 3.76
ARF3-206ENST00000539611 CEP164Q9UPV0 1460 aa38.5■■■■□ 3.75
ARF3-206ENST00000539611 MRC2Q9UBG0 1479 aa38.47■■■■□ 3.75
ARF3-206ENST00000539611 PRDM2Q13029 1718 aa38.41■■■■□ 3.74
ARF3-206ENST00000539611 WDR62O43379 1518 aa38.37■■■■□ 3.73
ARF3-206ENST00000539611 URB2Q14146 1524 aaKnown RBP38.21■■■■□ 3.71
ARF3-206ENST00000539611 TOPBP1Q92547 1522 aa37.96■■■■□ 3.67
ARF3-206ENST00000539611 ABCC8Q09428 1581 aa37.92■■■■□ 3.66
ARF3-206ENST00000539611 DNMBPQ6XZF7 1577 aa37.89■■■■□ 3.66
ARF3-206ENST00000539611 IFT140Q96RY7 1462 aa37.71■■■■□ 3.63
ARF3-206ENST00000539611 CUX1P39880 1505 aa37.66■■■■□ 3.62
ARF3-206ENST00000539611 POLA1P09884 1462 aaPredicted RBP37.64■■■■□ 3.62
ARF3-206ENST00000539611 ZNF608Q9ULD9 1512 aaPredicted RBP37.58■■■■□ 3.61
ARF3-206ENST00000539611 DNAJC5Q9H3Z4 198 aa37.58■■■■□ 3.61
ARF3-206ENST00000539611 TARBP1Q13395 1621 aaKnown RBP37.56■■■■□ 3.6
ARF3-206ENST00000539611 FGD5Q6ZNL6 1462 aa37.53■■■■□ 3.6
ARF3-206ENST00000539611 RAD54L2Q9Y4B4 1467 aa37.48■■■■□ 3.59
ARF3-206ENST00000539611 SOGA1O94964 1423 aa37.46■■■■□ 3.59
ARF3-206ENST00000539611 EIF4G3O43432 1585 aaKnown RBP37.39■■■■□ 3.58
ARF3-206ENST00000539611 WRNQ14191 1432 aaPredicted RBP eCLIP37.39■■■■□ 3.58
ARF3-206ENST00000539611 AQRO60306 1485 aaKnown RBP eCLIP37.35■■■■□ 3.57
ARF3-206ENST00000539611 SYNJ1O43426 1573 aa37.32■■■■□ 3.56
ARF3-206ENST00000539611 TOP2BQ02880 1626 aa37.32■■■■□ 3.56
ARF3-206ENST00000539611 BIVM-ERCC5R4GMW8 1640 aa37.31■■■■□ 3.56
ARF3-206ENST00000539611 TDRD9Q8NDG6 1382 aaKnown RBP37.27■■■■□ 3.56
ARF3-206ENST00000539611 WDR97A6NE52 1622 aa37.22■■■■□ 3.55
ARF3-206ENST00000539611 ABCA10Q8WWZ4 1543 aa37.18■■■■□ 3.54
ARF3-206ENST00000539611 OSCARQ8IYS5 282 aa37.07■■■■□ 3.52
ARF3-206ENST00000539611 GRIN2BQ13224 1484 aa37.03■■■■□ 3.52
ARF3-206ENST00000539611 GAPVD1Q14C86 1478 aa37.03■■■■□ 3.52
ARF3-206ENST00000539611 ABCA5Q8WWZ7 1642 aa37.03■■■■□ 3.52
ARF3-206ENST00000539611 SNAPC4Q5SXM2 1469 aa36.99■■■■□ 3.51
ARF3-206ENST00000539611 MAGI1Q96QZ7 1491 aaPredicted RBP36.94■■■■□ 3.5
ARF3-206ENST00000539611 PBRM1Q86U86 1689 aa36.91■■■■□ 3.5
ARF3-206ENST00000539611 CHD1O14646 1710 aa36.89■■■■□ 3.5
ARF3-206ENST00000539611 FBLN2P98095 1184 aa36.84■■■■□ 3.49
ARF3-206ENST00000539611 SYNJ2O15056 1496 aa36.8■■■■□ 3.48
ARF3-206ENST00000539611 CHMP7Q8WUX9 453 aaPredicted RBP36.76■■■■□ 3.48
ARF3-206ENST00000539611 ERICH3Q5RHP9 1530 aa36.72■■■■□ 3.47
ARF3-206ENST00000539611 ADAMTS12P58397 1594 aa36.66■■■■□ 3.46
ARF3-206ENST00000539611 FHAD1B1AJZ9 1412 aa36.6■■■■□ 3.45
ARF3-206ENST00000539611 KIF27Q86VH2 1401 aa36.59■■■■□ 3.45
ARF3-206ENST00000539611 GRIN2AQ12879 1464 aa36.56■■■■□ 3.44
ARF3-206ENST00000539611 CLASP1Q7Z460 1538 aa36.56■■■■□ 3.44
ARF3-206ENST00000539611 IGF1RP08069 1367 aa36.51■■■■□ 3.43
ARF3-206ENST00000539611 ARHGEF11O15085 1522 aa36.49■■■■□ 3.43
ARF3-206ENST00000539611 RIMBP3CA6NJZ7 1639 aa36.48■■■■□ 3.43
ARF3-206ENST00000539611 RIMBP3BA6NNM3 1639 aa36.48■■■■□ 3.43
ARF3-206ENST00000539611 RIMBP3Q9UFD9 1639 aa36.48■■■■□ 3.43
ARF3-206ENST00000539611 TRIM41Q8WV44 630 aa36.45■■■■□ 3.43
ARF3-206ENST00000539611 NUP160Q12769 1436 aa36.43■■■■□ 3.42
ARF3-206ENST00000539611 CEP170Q5SW79 1584 aa36.39■■■■□ 3.42
ARF3-206ENST00000539611 CUL7Q14999 1698 aa36.34■■■■□ 3.41
ARF3-206ENST00000539611 RUSC2Q8N2Y8 1516 aa36.31■■■■□ 3.4
ARF3-206ENST00000539611 CARMIL1Q5VZK9 1371 aa36.26■■■■□ 3.39
ARF3-206ENST00000539611 ARAP1Q96P48 1450 aa36.21■■■■□ 3.39
ARF3-206ENST00000539611 SHROOM2Q13796 1616 aa36.14■■■■□ 3.38
ARF3-206ENST00000539611 CYB5RLQ6IPT4 315 aa36.13■■■■□ 3.37
ARF3-206ENST00000539611 ERCC6L2Q5T890 1561 aa36.06■■■■□ 3.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms