RNA–Protein interactions for RNA: ENST00000539492.1

CD4-209, Transcript of CD4 molecule, humanhuman

TSL 4

Gene CD4, Length 579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-209ENST00000539492 NISCHQ9Y2I1 1504 aa20.57■□□□□ 0.88
CD4-209ENST00000539492 CCDC180Q9P1Z9 1646 aa18.56■□□□□ 0.56
CD4-209ENST00000539492 ABCC9O60706 1549 aa18.55■□□□□ 0.56
CD4-209ENST00000539492 RB1CC1Q8TDY2 1594 aa17.68■□□□□ 0.42
CD4-209ENST00000539492 NACADO15069 1562 aa17.53■□□□□ 0.4
CD4-209ENST00000539492 DNAJC5BQ9UF47 199 aa17.42■□□□□ 0.38
CD4-209ENST00000539492 UNC13AQ9UPW8 1703 aa17.34■□□□□ 0.37
CD4-209ENST00000539492 DCAF8L2P0C7V8 631 aa17.31■□□□□ 0.36
CD4-209ENST00000539492 MYO15BQ96JP2 1530 aa17.27■□□□□ 0.36
CD4-209ENST00000539492 PABPN1Q86U42 306 aaKnown RBP eCLIP17.21■□□□□ 0.35
CD4-209ENST00000539492 BICRAQ9NZM4 1560 aa17.15■□□□□ 0.34
CD4-209ENST00000539492 ZCCHC6Q5VYS8 1495 aaKnown RBP17.05■□□□□ 0.32
CD4-209ENST00000539492 DCAF1Q9Y4B6 1507 aa17.01■□□□□ 0.31
CD4-209ENST00000539492 SHROOM4Q9ULL8 1493 aa16.95■□□□□ 0.3
CD4-209ENST00000539492 SCRIBQ14160 1630 aa16.86■□□□□ 0.29
CD4-209ENST00000539492 CC2D2AQ9P2K1 1620 aa16.8■□□□□ 0.28
CD4-209ENST00000539492 EIF4G1Q04637 1599 aaKnown RBP16.74■□□□□ 0.27
CD4-209ENST00000539492 CECR2Q9BXF3 1484 aa16.73■□□□□ 0.27
CD4-209ENST00000539492 NCAPD3P42695 1498 aa16.15■□□□□ 0.18
CD4-209ENST00000539492 ATAD2BQ9ULI0 1458 aa16.1■□□□□ 0.17
CD4-209ENST00000539492 SMARCA4P51532 1647 aa16.09■□□□□ 0.17
CD4-209ENST00000539492 DNAJC5Q9H3Z4 198 aa16.09■□□□□ 0.17
CD4-209ENST00000539492 SMARCA2P51531 1590 aa16.08■□□□□ 0.16
CD4-209ENST00000539492 CUX2O14529 1486 aa16.07■□□□□ 0.16
CD4-209ENST00000539492 HMGXB3Q12766 1538 aa16.07■□□□□ 0.16
CD4-209ENST00000539492 ERCC6Q03468 1493 aa16.04■□□□□ 0.16
CD4-209ENST00000539492 BAZ1AQ9NRL2 1556 aaPredicted RBP15.99■□□□□ 0.15
CD4-209ENST00000539492 BAZ1BQ9UIG0 1483 aaKnown RBP15.94■□□□□ 0.14
CD4-209ENST00000539492 PEG3Q9GZU2 1588 aa15.94■□□□□ 0.14
CD4-209ENST00000539492 NESP48681 1621 aa15.91■□□□□ 0.14
CD4-209ENST00000539492 MROH2BQ7Z745 1585 aa15.83■□□□□ 0.13
CD4-209ENST00000539492 LAMC3Q9Y6N6 1575 aa15.83■□□□□ 0.13
CD4-209ENST00000539492 THOC2Q8NI27 1593 aaKnown RBP15.83■□□□□ 0.12
CD4-209ENST00000539492 KIF21AQ7Z4S6 1674 aa15.78■□□□□ 0.12
CD4-209ENST00000539492 PDS5BQ9NTI5 1447 aa15.72■□□□□ 0.11
CD4-209ENST00000539492 WIZO95785 1651 aa15.66■□□□□ 0.1
CD4-209ENST00000539492 CADPSQ9ULU8 1353 aa15.64■□□□□ 0.09
CD4-209ENST00000539492 MRC2Q9UBG0 1479 aa15.6■□□□□ 0.09
CD4-209ENST00000539492 WDR62O43379 1518 aa15.58■□□□□ 0.08
CD4-209ENST00000539492 CEP164Q9UPV0 1460 aa15.52■□□□□ 0.08
CD4-209ENST00000539492 FANCD2Q9BXW9 1451 aa15.48■□□□□ 0.07
CD4-209ENST00000539492 CFTRP13569 1480 aa15.47■□□□□ 0.07
CD4-209ENST00000539492 TOP2AP11388 1531 aaKnown RBP15.47■□□□□ 0.07
CD4-209ENST00000539492 RSF1Q96T23 1441 aaPredicted RBP15.46■□□□□ 0.07
CD4-209ENST00000539492 PRDM2Q13029 1718 aa15.43■□□□□ 0.06
CD4-209ENST00000539492 URB2Q14146 1524 aaKnown RBP15.36■□□□□ 0.05
CD4-209ENST00000539492 TRIM41Q8WV44 630 aa15.34■□□□□ 0.05
CD4-209ENST00000539492 OSCARQ8IYS5 282 aa15.26■□□□□ 0.03
CD4-209ENST00000539492 CCDC88BA6NC98 1476 aa15.26■□□□□ 0.03
CD4-209ENST00000539492 IFT140Q96RY7 1462 aa15.21■□□□□ 0.03
CD4-209ENST00000539492 TOPBP1Q92547 1522 aa15.19■□□□□ 0.02
CD4-209ENST00000539492 ZNF608Q9ULD9 1512 aaPredicted RBP15.17■□□□□ 0.02
CD4-209ENST00000539492 ABCC8Q09428 1581 aa15.16■□□□□ 0.02
CD4-209ENST00000539492 DNMBPQ6XZF7 1577 aa15.15■□□□□ 0.02
CD4-209ENST00000539492 RIMBP3CA6NJZ7 1639 aa15.14■□□□□ 0.01
CD4-209ENST00000539492 RIMBP3BA6NNM3 1639 aa15.14■□□□□ 0.01
CD4-209ENST00000539492 RIMBP3Q9UFD9 1639 aa15.14■□□□□ 0.01
CD4-209ENST00000539492 EIF4G3O43432 1585 aaKnown RBP15.13■□□□□ 0.01
CD4-209ENST00000539492 TARBP1Q13395 1621 aaKnown RBP15.08■□□□□ 0
CD4-209ENST00000539492 ARHGEF11O15085 1522 aa15.07■□□□□ 0
CD4-209ENST00000539492 CHD1O14646 1710 aa15.06■□□□□ 0
CD4-209ENST00000539492 POLA1P09884 1462 aaPredicted RBP15.02■□□□□ -0
CD4-209ENST00000539492 AQRO60306 1485 aaKnown RBP eCLIP15.01□□□□□ -0.01
CD4-209ENST00000539492 WDR97A6NE52 1622 aa14.96□□□□□ -0.01
CD4-209ENST00000539492 RAD54L2Q9Y4B4 1467 aa14.95□□□□□ -0.02
CD4-209ENST00000539492 SOGA1O94964 1423 aa14.92□□□□□ -0.02
CD4-209ENST00000539492 FGD5Q6ZNL6 1462 aa14.92□□□□□ -0.02
CD4-209ENST00000539492 ARAP1Q96P48 1450 aa14.9□□□□□ -0.02
CD4-209ENST00000539492 FBLN2P98095 1184 aa14.9□□□□□ -0.02
CD4-209ENST00000539492 CUX1P39880 1505 aa14.9□□□□□ -0.02
CD4-209ENST00000539492 TDRD9Q8NDG6 1382 aaKnown RBP14.89□□□□□ -0.03
CD4-209ENST00000539492 CYB5RLQ6IPT4 315 aa14.89□□□□□ -0.03
CD4-209ENST00000539492 SNAPC4Q5SXM2 1469 aa14.89□□□□□ -0.03
CD4-209ENST00000539492 MAGI1Q96QZ7 1491 aaPredicted RBP14.87□□□□□ -0.03
CD4-209ENST00000539492 CLASP1Q7Z460 1538 aa14.85□□□□□ -0.03
CD4-209ENST00000539492 SYNJ1O43426 1573 aa14.85□□□□□ -0.03
CD4-209ENST00000539492 PBRM1Q86U86 1689 aa14.84□□□□□ -0.03
CD4-209ENST00000539492 GRIN2BQ13224 1484 aa14.83□□□□□ -0.03
CD4-209ENST00000539492 CHMP7Q8WUX9 453 aaPredicted RBP14.8□□□□□ -0.04
CD4-209ENST00000539492 SYNJ2O15056 1496 aa14.8□□□□□ -0.04
CD4-209ENST00000539492 GAPVD1Q14C86 1478 aa14.77□□□□□ -0.04
CD4-209ENST00000539492 ABCA5Q8WWZ7 1642 aa14.77□□□□□ -0.05
CD4-209ENST00000539492 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
CD4-209ENST00000539492 TRHP20396 242 aaPredicted RBP14.75□□□□□ -0.05
CD4-209ENST00000539492 BIVM-ERCC5R4GMW8 1640 aa14.67□□□□□ -0.06
CD4-209ENST00000539492 ADAMTS12P58397 1594 aa14.66□□□□□ -0.06
CD4-209ENST00000539492 SUPT5HO00267 1087 aaKnown RBP14.66□□□□□ -0.06
CD4-209ENST00000539492 TOP2BQ02880 1626 aa14.66□□□□□ -0.06
CD4-209ENST00000539492 WRNQ14191 1432 aaPredicted RBP eCLIP14.66□□□□□ -0.06
CD4-209ENST00000539492 GRIN2AQ12879 1464 aa14.64□□□□□ -0.07
CD4-209ENST00000539492 NUP160Q12769 1436 aa14.61□□□□□ -0.07
CD4-209ENST00000539492 CEP170Q5SW79 1584 aa14.6□□□□□ -0.07
CD4-209ENST00000539492 ERCC6L2Q5T890 1561 aa14.59□□□□□ -0.07
CD4-209ENST00000539492 ERICH3Q5RHP9 1530 aa14.58□□□□□ -0.08
CD4-209ENST00000539492 SHROOM2Q13796 1616 aa14.58□□□□□ -0.08
CD4-209ENST00000539492 FHAD1B1AJZ9 1412 aa14.58□□□□□ -0.08
CD4-209ENST00000539492 KIF13AQ9H1H9 1805 aa14.46□□□□□ -0.09
CD4-209ENST00000539492 RUSC2Q8N2Y8 1516 aa14.45□□□□□ -0.1
CD4-209ENST00000539492 PRG4Q92954 1404 aaPredicted RBP14.44□□□□□ -0.1
CD4-209ENST00000539492 JPH4Q96JJ6 628 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 192.7 ms