RNA–Protein interactions for RNA: ENST00000539413.1

CIT-210, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 4

Gene CIT, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-210ENST00000539413 NISCHQ9Y2I1 1504 aa38.46■■■■□ 3.75
CIT-210ENST00000539413 CCDC180Q9P1Z9 1646 aa34.26■■■■□ 3.08
CIT-210ENST00000539413 ABCC9O60706 1549 aa33.77■■■■□ 3
CIT-210ENST00000539413 RB1CC1Q8TDY2 1594 aa32.35■■■□□ 2.77
CIT-210ENST00000539413 NACADO15069 1562 aa32.26■■■□□ 2.75
CIT-210ENST00000539413 DCAF8L2P0C7V8 631 aa32.23■■■□□ 2.75
CIT-210ENST00000539413 ZCCHC6Q5VYS8 1495 aaKnown RBP32■■■□□ 2.71
CIT-210ENST00000539413 MYO15BQ96JP2 1530 aa31.98■■■□□ 2.71
CIT-210ENST00000539413 DCAF1Q9Y4B6 1507 aa31.78■■■□□ 2.68
CIT-210ENST00000539413 UNC13AQ9UPW8 1703 aa31.63■■■□□ 2.65
CIT-210ENST00000539413 PABPN1Q86U42 306 aaKnown RBP eCLIP31.52■■■□□ 2.64
CIT-210ENST00000539413 BICRAQ9NZM4 1560 aa31.42■■■□□ 2.62
CIT-210ENST00000539413 SCRIBQ14160 1630 aa31.29■■■□□ 2.6
CIT-210ENST00000539413 DNAJC5BQ9UF47 199 aa31.19■■■□□ 2.58
CIT-210ENST00000539413 SHROOM4Q9ULL8 1493 aa31■■■□□ 2.55
CIT-210ENST00000539413 EIF4G1Q04637 1599 aaKnown RBP30.59■■■□□ 2.49
CIT-210ENST00000539413 CC2D2AQ9P2K1 1620 aa30.52■■■□□ 2.48
CIT-210ENST00000539413 CECR2Q9BXF3 1484 aa30.34■■■□□ 2.45
CIT-210ENST00000539413 SMARCA4P51532 1647 aa29.89■■■□□ 2.38
CIT-210ENST00000539413 BAZ1AQ9NRL2 1556 aaPredicted RBP29.81■■■□□ 2.36
CIT-210ENST00000539413 NCAPD3P42695 1498 aa29.78■■■□□ 2.36
CIT-210ENST00000539413 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
CIT-210ENST00000539413 SMARCA2P51531 1590 aa29.71■■■□□ 2.35
CIT-210ENST00000539413 MROH2BQ7Z745 1585 aa29.66■■■□□ 2.34
CIT-210ENST00000539413 HMGXB3Q12766 1538 aa29.61■■■□□ 2.33
CIT-210ENST00000539413 PEG3Q9GZU2 1588 aa29.58■■■□□ 2.33
CIT-210ENST00000539413 BAZ1BQ9UIG0 1483 aaKnown RBP29.52■■■□□ 2.32
CIT-210ENST00000539413 WIZO95785 1651 aa29.33■■■□□ 2.29
CIT-210ENST00000539413 RSF1Q96T23 1441 aaPredicted RBP29.23■■■□□ 2.27
CIT-210ENST00000539413 NESP48681 1621 aa29.17■■■□□ 2.26
CIT-210ENST00000539413 ERCC6Q03468 1493 aa29.09■■■□□ 2.25
CIT-210ENST00000539413 LAMC3Q9Y6N6 1575 aa29.02■■■□□ 2.24
CIT-210ENST00000539413 TOP2AP11388 1531 aaKnown RBP28.99■■■□□ 2.23
CIT-210ENST00000539413 CADPSQ9ULU8 1353 aa28.9■■■□□ 2.22
CIT-210ENST00000539413 CUX2O14529 1486 aa28.85■■■□□ 2.21
CIT-210ENST00000539413 PDS5BQ9NTI5 1447 aa28.83■■■□□ 2.21
CIT-210ENST00000539413 KIF21AQ7Z4S6 1674 aa28.8■■■□□ 2.2
CIT-210ENST00000539413 THOC2Q8NI27 1593 aaKnown RBP28.76■■■□□ 2.19
CIT-210ENST00000539413 CFTRP13569 1480 aa28.69■■■□□ 2.18
CIT-210ENST00000539413 CCDC88BA6NC98 1476 aa28.66■■■□□ 2.18
CIT-210ENST00000539413 FANCD2Q9BXW9 1451 aa28.59■■■□□ 2.17
CIT-210ENST00000539413 MRC2Q9UBG0 1479 aa28.56■■■□□ 2.16
CIT-210ENST00000539413 CEP164Q9UPV0 1460 aa28.56■■■□□ 2.16
CIT-210ENST00000539413 WDR62O43379 1518 aa28.48■■■□□ 2.15
CIT-210ENST00000539413 PRDM2Q13029 1718 aa28.43■■■□□ 2.14
CIT-210ENST00000539413 SUPT5HO00267 1087 aaKnown RBP28.35■■■□□ 2.13
CIT-210ENST00000539413 URB2Q14146 1524 aaKnown RBP28.33■■■□□ 2.13
CIT-210ENST00000539413 DNAJC5Q9H3Z4 198 aa28.21■■■□□ 2.11
CIT-210ENST00000539413 TOPBP1Q92547 1522 aa28.11■■■□□ 2.09
CIT-210ENST00000539413 ABCC8Q09428 1581 aa28.05■■■□□ 2.08
CIT-210ENST00000539413 DNMBPQ6XZF7 1577 aa28.05■■■□□ 2.08
CIT-210ENST00000539413 IFT140Q96RY7 1462 aa27.96■■■□□ 2.07
CIT-210ENST00000539413 ZNF608Q9ULD9 1512 aaPredicted RBP27.89■■■□□ 2.06
CIT-210ENST00000539413 POLA1P09884 1462 aaPredicted RBP27.86■■■□□ 2.05
CIT-210ENST00000539413 CUX1P39880 1505 aa27.83■■■□□ 2.05
CIT-210ENST00000539413 TARBP1Q13395 1621 aaKnown RBP27.82■■■□□ 2.04
CIT-210ENST00000539413 EIF4G3O43432 1585 aaKnown RBP27.77■■■□□ 2.04
CIT-210ENST00000539413 FGD5Q6ZNL6 1462 aa27.76■■■□□ 2.04
CIT-210ENST00000539413 RAD54L2Q9Y4B4 1467 aa27.76■■■□□ 2.03
CIT-210ENST00000539413 SOGA1O94964 1423 aa27.74■■■□□ 2.03
CIT-210ENST00000539413 AQRO60306 1485 aaKnown RBP eCLIP27.7■■■□□ 2.02
CIT-210ENST00000539413 TDRD9Q8NDG6 1382 aaKnown RBP27.61■■■□□ 2.01
CIT-210ENST00000539413 OSCARQ8IYS5 282 aa27.61■■■□□ 2.01
CIT-210ENST00000539413 WRNQ14191 1432 aaPredicted RBP eCLIP27.56■■■□□ 2
CIT-210ENST00000539413 WDR97A6NE52 1622 aa27.55■■■□□ 2
CIT-210ENST00000539413 SYNJ1O43426 1573 aa27.53■■■□□ 2
CIT-210ENST00000539413 BIVM-ERCC5R4GMW8 1640 aa27.52■■■□□ 2
CIT-210ENST00000539413 TOP2BQ02880 1626 aa27.52■■■□□ 2
CIT-210ENST00000539413 ABCA10Q8WWZ4 1543 aa27.46■■□□□ 1.99
CIT-210ENST00000539413 CHD1O14646 1710 aa27.44■■□□□ 1.98
CIT-210ENST00000539413 SNAPC4Q5SXM2 1469 aa27.44■■□□□ 1.98
CIT-210ENST00000539413 GRIN2BQ13224 1484 aa27.43■■□□□ 1.98
CIT-210ENST00000539413 GAPVD1Q14C86 1478 aa27.41■■□□□ 1.98
CIT-210ENST00000539413 FBLN2P98095 1184 aa27.4■■□□□ 1.98
CIT-210ENST00000539413 ABCA5Q8WWZ7 1642 aa27.39■■□□□ 1.98
CIT-210ENST00000539413 PBRM1Q86U86 1689 aa27.36■■□□□ 1.97
CIT-210ENST00000539413 MAGI1Q96QZ7 1491 aaPredicted RBP27.36■■□□□ 1.97
CIT-210ENST00000539413 SYNJ2O15056 1496 aa27.27■■□□□ 1.96
CIT-210ENST00000539413 CHMP7Q8WUX9 453 aaPredicted RBP27.27■■□□□ 1.96
CIT-210ENST00000539413 RIMBP3CA6NJZ7 1639 aa27.23■■□□□ 1.95
CIT-210ENST00000539413 RIMBP3BA6NNM3 1639 aa27.23■■□□□ 1.95
CIT-210ENST00000539413 RIMBP3Q9UFD9 1639 aa27.23■■□□□ 1.95
CIT-210ENST00000539413 TRIM41Q8WV44 630 aa27.22■■□□□ 1.95
CIT-210ENST00000539413 ARHGEF11O15085 1522 aa27.19■■□□□ 1.94
CIT-210ENST00000539413 ADAMTS12P58397 1594 aa27.15■■□□□ 1.94
CIT-210ENST00000539413 CLASP1Q7Z460 1538 aa27.15■■□□□ 1.94
CIT-210ENST00000539413 ERICH3Q5RHP9 1530 aa27.12■■□□□ 1.93
CIT-210ENST00000539413 GRIN2AQ12879 1464 aa27.08■■□□□ 1.93
CIT-210ENST00000539413 FHAD1B1AJZ9 1412 aa27.07■■□□□ 1.92
CIT-210ENST00000539413 KIF27Q86VH2 1401 aa26.99■■□□□ 1.91
CIT-210ENST00000539413 CEP170Q5SW79 1584 aa26.97■■□□□ 1.91
CIT-210ENST00000539413 ARAP1Q96P48 1450 aa26.97■■□□□ 1.91
CIT-210ENST00000539413 NUP160Q12769 1436 aa26.97■■□□□ 1.91
CIT-210ENST00000539413 CYB5RLQ6IPT4 315 aa26.95■■□□□ 1.9
CIT-210ENST00000539413 IGF1RP08069 1367 aa26.92■■□□□ 1.9
CIT-210ENST00000539413 CUL7Q14999 1698 aa26.84■■□□□ 1.89
CIT-210ENST00000539413 ERCC6L2Q5T890 1561 aa26.79■■□□□ 1.88
CIT-210ENST00000539413 SHROOM2Q13796 1616 aa26.79■■□□□ 1.88
CIT-210ENST00000539413 RUSC2Q8N2Y8 1516 aa26.75■■□□□ 1.87
CIT-210ENST00000539413 CARMIL1Q5VZK9 1371 aa26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms