RNA–Protein interactions for RNA: ENST00000539372.5

TNFRSF1A-212, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,063 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-212ENST00000539372 NISCHQ9Y2I1 1504 aa47.15■■■■■ 5.14
TNFRSF1A-212ENST00000539372 CCDC180Q9P1Z9 1646 aa42.09■■■■■ 4.33
TNFRSF1A-212ENST00000539372 ABCC9O60706 1549 aa41.83■■■■■ 4.29
TNFRSF1A-212ENST00000539372 RB1CC1Q8TDY2 1594 aa39.91■■■■□ 3.98
TNFRSF1A-212ENST00000539372 DCAF8L2P0C7V8 631 aa39.75■■■■□ 3.95
TNFRSF1A-212ENST00000539372 NACADO15069 1562 aa39.72■■■■□ 3.95
TNFRSF1A-212ENST00000539372 MYO15BQ96JP2 1530 aa39.26■■■■□ 3.88
TNFRSF1A-212ENST00000539372 ZCCHC6Q5VYS8 1495 aaKnown RBP39.16■■■■□ 3.86
TNFRSF1A-212ENST00000539372 PABPN1Q86U42 306 aaKnown RBP eCLIP39.05■■■■□ 3.84
TNFRSF1A-212ENST00000539372 UNC13AQ9UPW8 1703 aa39■■■■□ 3.83
TNFRSF1A-212ENST00000539372 DCAF1Q9Y4B6 1507 aa38.92■■■■□ 3.82
TNFRSF1A-212ENST00000539372 DNAJC5BQ9UF47 199 aa38.91■■■■□ 3.82
TNFRSF1A-212ENST00000539372 BICRAQ9NZM4 1560 aa38.74■■■■□ 3.79
TNFRSF1A-212ENST00000539372 SCRIBQ14160 1630 aa38.48■■■■□ 3.75
TNFRSF1A-212ENST00000539372 SHROOM4Q9ULL8 1493 aa38.2■■■■□ 3.71
TNFRSF1A-212ENST00000539372 EIF4G1Q04637 1599 aaKnown RBP37.77■■■■□ 3.64
TNFRSF1A-212ENST00000539372 CC2D2AQ9P2K1 1620 aa37.77■■■■□ 3.64
TNFRSF1A-212ENST00000539372 CECR2Q9BXF3 1484 aa37.62■■■■□ 3.61
TNFRSF1A-212ENST00000539372 SMARCA4P51532 1647 aa36.7■■■■□ 3.47
TNFRSF1A-212ENST00000539372 NCAPD3P42695 1498 aa36.68■■■■□ 3.46
TNFRSF1A-212ENST00000539372 ATAD2BQ9ULI0 1458 aa36.65■■■■□ 3.46
TNFRSF1A-212ENST00000539372 BAZ1AQ9NRL2 1556 aaPredicted RBP36.56■■■■□ 3.44
TNFRSF1A-212ENST00000539372 SMARCA2P51531 1590 aa36.54■■■■□ 3.44
TNFRSF1A-212ENST00000539372 HMGXB3Q12766 1538 aa36.43■■■■□ 3.42
TNFRSF1A-212ENST00000539372 MROH2BQ7Z745 1585 aa36.36■■■■□ 3.41
TNFRSF1A-212ENST00000539372 BAZ1BQ9UIG0 1483 aaKnown RBP36.32■■■■□ 3.41
TNFRSF1A-212ENST00000539372 PEG3Q9GZU2 1588 aa36.3■■■■□ 3.4
TNFRSF1A-212ENST00000539372 ERCC6Q03468 1493 aa36.08■■■■□ 3.37
TNFRSF1A-212ENST00000539372 NESP48681 1621 aa36.05■■■■□ 3.36
TNFRSF1A-212ENST00000539372 WIZO95785 1651 aa35.94■■■■□ 3.34
TNFRSF1A-212ENST00000539372 CUX2O14529 1486 aa35.82■■■■□ 3.32
TNFRSF1A-212ENST00000539372 LAMC3Q9Y6N6 1575 aa35.77■■■■□ 3.32
TNFRSF1A-212ENST00000539372 RSF1Q96T23 1441 aaPredicted RBP35.74■■■■□ 3.31
TNFRSF1A-212ENST00000539372 CADPSQ9ULU8 1353 aa35.61■■■■□ 3.29
TNFRSF1A-212ENST00000539372 PDS5BQ9NTI5 1447 aa35.59■■■■□ 3.29
TNFRSF1A-212ENST00000539372 KIF21AQ7Z4S6 1674 aa35.55■■■■□ 3.28
TNFRSF1A-212ENST00000539372 THOC2Q8NI27 1593 aaKnown RBP35.55■■■■□ 3.28
TNFRSF1A-212ENST00000539372 TOP2AP11388 1531 aaKnown RBP35.5■■■■□ 3.27
TNFRSF1A-212ENST00000539372 DNAJC5Q9H3Z4 198 aa35.4■■■■□ 3.26
TNFRSF1A-212ENST00000539372 CFTRP13569 1480 aa35.27■■■■□ 3.24
TNFRSF1A-212ENST00000539372 MRC2Q9UBG0 1479 aa35.27■■■■□ 3.24
TNFRSF1A-212ENST00000539372 FANCD2Q9BXW9 1451 aa35.22■■■■□ 3.23
TNFRSF1A-212ENST00000539372 CEP164Q9UPV0 1460 aa35.21■■■■□ 3.23
TNFRSF1A-212ENST00000539372 WDR62O43379 1518 aa35.16■■■■□ 3.22
TNFRSF1A-212ENST00000539372 CCDC88BA6NC98 1476 aa35.12■■■■□ 3.21
TNFRSF1A-212ENST00000539372 URB2Q14146 1524 aaKnown RBP34.91■■■■□ 3.18
TNFRSF1A-212ENST00000539372 PRDM2Q13029 1718 aa34.9■■■■□ 3.18
TNFRSF1A-212ENST00000539372 TOPBP1Q92547 1522 aa34.59■■■■□ 3.13
TNFRSF1A-212ENST00000539372 SUPT5HO00267 1087 aaKnown RBP34.54■■■■□ 3.12
TNFRSF1A-212ENST00000539372 ABCC8Q09428 1581 aa34.49■■■■□ 3.11
TNFRSF1A-212ENST00000539372 IFT140Q96RY7 1462 aa34.48■■■■□ 3.11
TNFRSF1A-212ENST00000539372 DNMBPQ6XZF7 1577 aa34.48■■■■□ 3.11
TNFRSF1A-212ENST00000539372 ZNF608Q9ULD9 1512 aaPredicted RBP34.43■■■■□ 3.1
TNFRSF1A-212ENST00000539372 OSCARQ8IYS5 282 aa34.3■■■■□ 3.08
TNFRSF1A-212ENST00000539372 POLA1P09884 1462 aaPredicted RBP34.26■■■■□ 3.07
TNFRSF1A-212ENST00000539372 EIF4G3O43432 1585 aaKnown RBP34.23■■■■□ 3.07
TNFRSF1A-212ENST00000539372 TARBP1Q13395 1621 aaKnown RBP34.22■■■■□ 3.07
TNFRSF1A-212ENST00000539372 AQRO60306 1485 aaKnown RBP eCLIP34.18■■■■□ 3.069e-7■■■■■ 31.3
TNFRSF1A-212ENST00000539372 RAD54L2Q9Y4B4 1467 aa34.16■■■■□ 3.06
TNFRSF1A-212ENST00000539372 CUX1P39880 1505 aa34.14■■■■□ 3.06
TNFRSF1A-212ENST00000539372 SOGA1O94964 1423 aa34.13■■■■□ 3.05
TNFRSF1A-212ENST00000539372 FGD5Q6ZNL6 1462 aa34.11■■■■□ 3.05
TNFRSF1A-212ENST00000539372 TRIM41Q8WV44 630 aa34.1■■■■□ 3.05
TNFRSF1A-212ENST00000539372 TDRD9Q8NDG6 1382 aaKnown RBP34.03■■■■□ 3.04
TNFRSF1A-212ENST00000539372 FBLN2P98095 1184 aa33.91■■■■□ 3.02
TNFRSF1A-212ENST00000539372 CHD1O14646 1710 aa33.89■■■■□ 3.02
TNFRSF1A-212ENST00000539372 WDR97A6NE52 1622 aa33.86■■■■□ 3.01
TNFRSF1A-212ENST00000539372 SNAPC4Q5SXM2 1469 aa33.82■■■■□ 3.01
TNFRSF1A-212ENST00000539372 RIMBP3CA6NJZ7 1639 aa33.79■■■■□ 3
TNFRSF1A-212ENST00000539372 RIMBP3BA6NNM3 1639 aa33.79■■■■□ 3
TNFRSF1A-212ENST00000539372 RIMBP3Q9UFD9 1639 aa33.79■■■■□ 3
TNFRSF1A-212ENST00000539372 GRIN2BQ13224 1484 aa33.76■■■■□ 3
TNFRSF1A-212ENST00000539372 ARHGEF11O15085 1522 aa33.74■■■□□ 2.99
TNFRSF1A-212ENST00000539372 ABCA10Q8WWZ4 1543 aa33.73■■■□□ 2.99
TNFRSF1A-212ENST00000539372 WRNQ14191 1432 aaPredicted RBP eCLIP33.71■■■□□ 2.99
TNFRSF1A-212ENST00000539372 MAGI1Q96QZ7 1491 aaPredicted RBP33.71■■■□□ 2.99
TNFRSF1A-212ENST00000539372 GAPVD1Q14C86 1478 aa33.7■■■□□ 2.99
TNFRSF1A-212ENST00000539372 CHMP7Q8WUX9 453 aaPredicted RBP33.69■■■□□ 2.98
TNFRSF1A-212ENST00000539372 SYNJ1O43426 1573 aa33.68■■■□□ 2.98
TNFRSF1A-212ENST00000539372 TOP2BQ02880 1626 aa33.67■■■□□ 2.98
TNFRSF1A-212ENST00000539372 BIVM-ERCC5R4GMW8 1640 aa33.65■■■□□ 2.98
TNFRSF1A-212ENST00000539372 PBRM1Q86U86 1689 aa33.64■■■□□ 2.98
TNFRSF1A-212ENST00000539372 ABCA5Q8WWZ7 1642 aa33.63■■■□□ 2.97
TNFRSF1A-212ENST00000539372 SYNJ2O15056 1496 aa33.61■■■□□ 2.97
TNFRSF1A-212ENST00000539372 CYB5RLQ6IPT4 315 aa33.51■■■□□ 2.95
TNFRSF1A-212ENST00000539372 CLASP1Q7Z460 1538 aa33.51■■■□□ 2.95
TNFRSF1A-212ENST00000539372 ARAP1Q96P48 1450 aa33.44■■■□□ 2.94
TNFRSF1A-212ENST00000539372 ADAMTS12P58397 1594 aa33.36■■■□□ 2.93
TNFRSF1A-212ENST00000539372 GRIN2AQ12879 1464 aa33.33■■■□□ 2.93
TNFRSF1A-212ENST00000539372 ERICH3Q5RHP9 1530 aa33.29■■■□□ 2.92
TNFRSF1A-212ENST00000539372 FHAD1B1AJZ9 1412 aa33.28■■■□□ 2.92
TNFRSF1A-212ENST00000539372 CEP170Q5SW79 1584 aa33.21■■■□□ 2.91
TNFRSF1A-212ENST00000539372 NUP160Q12769 1436 aa33.19■■■□□ 2.9
TNFRSF1A-212ENST00000539372 ERCC6L2Q5T890 1561 aa33.07■■■□□ 2.88
TNFRSF1A-212ENST00000539372 KIF27Q86VH2 1401 aa33.04■■■□□ 2.88
TNFRSF1A-212ENST00000539372 TRHP20396 242 aaPredicted RBP33.02■■■□□ 2.88
TNFRSF1A-212ENST00000539372 IGF1RP08069 1367 aa33■■■□□ 2.87
TNFRSF1A-212ENST00000539372 SHROOM2Q13796 1616 aa32.99■■■□□ 2.87
TNFRSF1A-212ENST00000539372 JPH4Q96JJ6 628 aa32.89■■■□□ 2.86
TNFRSF1A-212ENST00000539372 PRG4Q92954 1404 aaPredicted RBP32.88■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms