RNA–Protein interactions for RNA: ENST00000539365.1

PTPN6-213, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 5

Gene PTPN6, Length 907 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-213ENST00000539365 NISCHQ9Y2I1 1504 aa33.69■■■□□ 2.98
PTPN6-213ENST00000539365 CCDC180Q9P1Z9 1646 aa29.99■■■□□ 2.39
PTPN6-213ENST00000539365 ABCC9O60706 1549 aa29.75■■■□□ 2.35
PTPN6-213ENST00000539365 RB1CC1Q8TDY2 1594 aa28.47■■■□□ 2.15
PTPN6-213ENST00000539365 DCAF8L2P0C7V8 631 aa28.47■■■□□ 2.15
PTPN6-213ENST00000539365 NACADO15069 1562 aa28.37■■■□□ 2.13
PTPN6-213ENST00000539365 MYO15BQ96JP2 1530 aa28.12■■■□□ 2.09
PTPN6-213ENST00000539365 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.06
PTPN6-213ENST00000539365 DCAF1Q9Y4B6 1507 aa27.86■■■□□ 2.05
PTPN6-213ENST00000539365 PABPN1Q86U42 306 aaKnown RBP eCLIP27.83■■■□□ 2.05
PTPN6-213ENST00000539365 DNAJC5BQ9UF47 199 aa27.64■■■□□ 2.02
PTPN6-213ENST00000539365 UNC13AQ9UPW8 1703 aa27.61■■■□□ 2.01
PTPN6-213ENST00000539365 BICRAQ9NZM4 1560 aa27.53■■■□□ 2
PTPN6-213ENST00000539365 SCRIBQ14160 1630 aa27.34■■□□□ 1.97
PTPN6-213ENST00000539365 SHROOM4Q9ULL8 1493 aa27.32■■□□□ 1.96
PTPN6-213ENST00000539365 EIF4G1Q04637 1599 aaKnown RBP26.88■■□□□ 1.89
PTPN6-213ENST00000539365 CC2D2AQ9P2K1 1620 aa26.83■■□□□ 1.89
PTPN6-213ENST00000539365 CECR2Q9BXF3 1484 aa26.8■■□□□ 1.88
PTPN6-213ENST00000539365 NCAPD3P42695 1498 aa26.23■■□□□ 1.79
PTPN6-213ENST00000539365 ATAD2BQ9ULI0 1458 aa26.16■■□□□ 1.78
PTPN6-213ENST00000539365 SMARCA4P51532 1647 aa26.14■■□□□ 1.77
PTPN6-213ENST00000539365 BAZ1AQ9NRL2 1556 aaPredicted RBP26.13■■□□□ 1.77
PTPN6-213ENST00000539365 SMARCA2P51531 1590 aa26.12■■□□□ 1.77
PTPN6-213ENST00000539365 HMGXB3Q12766 1538 aa25.98■■□□□ 1.75
PTPN6-213ENST00000539365 BAZ1BQ9UIG0 1483 aaKnown RBP25.93■■□□□ 1.74
PTPN6-213ENST00000539365 MROH2BQ7Z745 1585 aa25.92■■□□□ 1.74
PTPN6-213ENST00000539365 PEG3Q9GZU2 1588 aa25.91■■□□□ 1.74
PTPN6-213ENST00000539365 ERCC6Q03468 1493 aa25.72■■□□□ 1.71
PTPN6-213ENST00000539365 NESP48681 1621 aa25.6■■□□□ 1.69
PTPN6-213ENST00000539365 WIZO95785 1651 aa25.58■■□□□ 1.68
PTPN6-213ENST00000539365 RSF1Q96T23 1441 aaPredicted RBP25.57■■□□□ 1.68
PTPN6-213ENST00000539365 CUX2O14529 1486 aa25.53■■□□□ 1.68
PTPN6-213ENST00000539365 LAMC3Q9Y6N6 1575 aa25.52■■□□□ 1.68
PTPN6-213ENST00000539365 CADPSQ9ULU8 1353 aa25.48■■□□□ 1.67
PTPN6-213ENST00000539365 PDS5BQ9NTI5 1447 aa25.47■■□□□ 1.67
PTPN6-213ENST00000539365 TOP2AP11388 1531 aaKnown RBP25.33■■□□□ 1.65
PTPN6-213ENST00000539365 DNAJC5Q9H3Z4 198 aa25.23■■□□□ 1.63
PTPN6-213ENST00000539365 THOC2Q8NI27 1593 aaKnown RBP25.21■■□□□ 1.63
PTPN6-213ENST00000539365 CFTRP13569 1480 aa25.21■■□□□ 1.63
PTPN6-213ENST00000539365 KIF21AQ7Z4S6 1674 aa25.2■■□□□ 1.62
PTPN6-213ENST00000539365 MRC2Q9UBG0 1479 aa25.15■■□□□ 1.62
PTPN6-213ENST00000539365 FANCD2Q9BXW9 1451 aa25.13■■□□□ 1.61
PTPN6-213ENST00000539365 CEP164Q9UPV0 1460 aa25.12■■□□□ 1.61
PTPN6-213ENST00000539365 CCDC88BA6NC98 1476 aa25.09■■□□□ 1.61
PTPN6-213ENST00000539365 WDR62O43379 1518 aa25.02■■□□□ 1.6
PTPN6-213ENST00000539365 URB2Q14146 1524 aaKnown RBP24.85■■□□□ 1.57
PTPN6-213ENST00000539365 SUPT5HO00267 1087 aaKnown RBP24.8■■□□□ 1.56
PTPN6-213ENST00000539365 PRDM2Q13029 1718 aa24.79■■□□□ 1.56
PTPN6-213ENST00000539365 ABCC8Q09428 1581 aa24.75■■□□□ 1.55
PTPN6-213ENST00000539365 TOPBP1Q92547 1522 aa24.66■■□□□ 1.54
PTPN6-213ENST00000539365 IFT140Q96RY7 1462 aa24.64■■□□□ 1.54
PTPN6-213ENST00000539365 DNMBPQ6XZF7 1577 aa24.59■■□□□ 1.53
PTPN6-213ENST00000539365 OSCARQ8IYS5 282 aa24.57■■□□□ 1.52
PTPN6-213ENST00000539365 ZNF608Q9ULD9 1512 aaPredicted RBP24.49■■□□□ 1.51
PTPN6-213ENST00000539365 POLA1P09884 1462 aaPredicted RBP24.43■■□□□ 1.5
PTPN6-213ENST00000539365 SOGA1O94964 1423 aa24.42■■□□□ 1.5
PTPN6-213ENST00000539365 AQRO60306 1485 aaKnown RBP eCLIP24.37■■□□□ 1.49
PTPN6-213ENST00000539365 TARBP1Q13395 1621 aaKnown RBP24.35■■□□□ 1.49
PTPN6-213ENST00000539365 RAD54L2Q9Y4B4 1467 aa24.34■■□□□ 1.49
PTPN6-213ENST00000539365 FGD5Q6ZNL6 1462 aa24.33■■□□□ 1.49
PTPN6-213ENST00000539365 CUX1P39880 1505 aa24.32■■□□□ 1.48
PTPN6-213ENST00000539365 EIF4G3O43432 1585 aaKnown RBP24.31■■□□□ 1.48
PTPN6-213ENST00000539365 TDRD9Q8NDG6 1382 aaKnown RBP24.3■■□□□ 1.48
PTPN6-213ENST00000539365 FBLN2P98095 1184 aa24.26■■□□□ 1.47
PTPN6-213ENST00000539365 TRIM41Q8WV44 630 aa24.25■■□□□ 1.47
PTPN6-213ENST00000539365 WDR97A6NE52 1622 aa24.2■■□□□ 1.46
PTPN6-213ENST00000539365 CHMP7Q8WUX9 453 aaPredicted RBP24.16■■□□□ 1.46
PTPN6-213ENST00000539365 WRNQ14191 1432 aaPredicted RBP eCLIP24.15■■□□□ 1.46
PTPN6-213ENST00000539365 GRIN2BQ13224 1484 aa24.13■■□□□ 1.45
PTPN6-213ENST00000539365 ABCA10Q8WWZ4 1543 aa24.1■■□□□ 1.45
PTPN6-213ENST00000539365 GAPVD1Q14C86 1478 aa24.09■■□□□ 1.45
PTPN6-213ENST00000539365 SNAPC4Q5SXM2 1469 aa24.08■■□□□ 1.45
PTPN6-213ENST00000539365 MAGI1Q96QZ7 1491 aaPredicted RBP24.08■■□□□ 1.45
PTPN6-213ENST00000539365 TOP2BQ02880 1626 aa24.03■■□□□ 1.44
PTPN6-213ENST00000539365 CHD1O14646 1710 aa24.02■■□□□ 1.44
PTPN6-213ENST00000539365 SYNJ2O15056 1496 aa24■■□□□ 1.43
PTPN6-213ENST00000539365 BIVM-ERCC5R4GMW8 1640 aa23.99■■□□□ 1.43
PTPN6-213ENST00000539365 ARHGEF11O15085 1522 aa23.98■■□□□ 1.43
PTPN6-213ENST00000539365 RIMBP3CA6NJZ7 1639 aa23.97■■□□□ 1.43
PTPN6-213ENST00000539365 RIMBP3BA6NNM3 1639 aa23.97■■□□□ 1.43
PTPN6-213ENST00000539365 SYNJ1O43426 1573 aa23.97■■□□□ 1.43
PTPN6-213ENST00000539365 RIMBP3Q9UFD9 1639 aa23.97■■□□□ 1.43
PTPN6-213ENST00000539365 ABCA5Q8WWZ7 1642 aa23.93■■□□□ 1.42
PTPN6-213ENST00000539365 CYB5RLQ6IPT4 315 aa23.93■■□□□ 1.42
PTPN6-213ENST00000539365 PBRM1Q86U86 1689 aa23.89■■□□□ 1.41
PTPN6-213ENST00000539365 CLASP1Q7Z460 1538 aa23.82■■□□□ 1.4
PTPN6-213ENST00000539365 FHAD1B1AJZ9 1412 aa23.82■■□□□ 1.4
PTPN6-213ENST00000539365 ERICH3Q5RHP9 1530 aa23.8■■□□□ 1.4
PTPN6-213ENST00000539365 GRIN2AQ12879 1464 aa23.79■■□□□ 1.4
PTPN6-213ENST00000539365 ARAP1Q96P48 1450 aa23.75■■□□□ 1.39
PTPN6-213ENST00000539365 ADAMTS12P58397 1594 aa23.73■■□□□ 1.39
PTPN6-213ENST00000539365 NUP160Q12769 1436 aa23.7■■□□□ 1.38
PTPN6-213ENST00000539365 KIF27Q86VH2 1401 aa23.7■■□□□ 1.38
PTPN6-213ENST00000539365 IGF1RP08069 1367 aa23.65■■□□□ 1.38
PTPN6-213ENST00000539365 CEP170Q5SW79 1584 aa23.61■■□□□ 1.37
PTPN6-213ENST00000539365 TRHP20396 242 aaPredicted RBP23.59■■□□□ 1.37
PTPN6-213ENST00000539365 JPH4Q96JJ6 628 aa23.59■■□□□ 1.37
PTPN6-213ENST00000539365 CARMIL1Q5VZK9 1371 aa23.52■■□□□ 1.36
PTPN6-213ENST00000539365 PRG4Q92954 1404 aaPredicted RBP23.5■■□□□ 1.35
PTPN6-213ENST00000539365 SHROOM2Q13796 1616 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms