RNA–Protein interactions for RNA: ENST00000539320.2

SCARB1-206, Transcript of scavenger receptor class B member 1, humanhuman

TSL 2

Gene SCARB1, Length 720 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-206ENST00000539320 NISCHQ9Y2I1 1504 aa55.16■■■■■ 6.42
SCARB1-206ENST00000539320 CCDC180Q9P1Z9 1646 aa49.38■■■■■ 5.5
SCARB1-206ENST00000539320 ABCC9O60706 1549 aa48.93■■■■■ 5.42
SCARB1-206ENST00000539320 RB1CC1Q8TDY2 1594 aa46.79■■■■■ 5.08
SCARB1-206ENST00000539320 NACADO15069 1562 aa46.57■■■■■ 5.05
SCARB1-206ENST00000539320 DCAF8L2P0C7V8 631 aa46.26■■■■■ 5
SCARB1-206ENST00000539320 MYO15BQ96JP2 1530 aa46.08■■■■■ 4.97
SCARB1-206ENST00000539320 ZCCHC6Q5VYS8 1495 aaKnown RBP45.86■■■■■ 4.93
SCARB1-206ENST00000539320 UNC13AQ9UPW8 1703 aa45.7■■■■■ 4.91
SCARB1-206ENST00000539320 DCAF1Q9Y4B6 1507 aa45.63■■■■■ 4.9
SCARB1-206ENST00000539320 PABPN1Q86U42 306 aaKnown RBP eCLIP45.56■■■■■ 4.88
SCARB1-206ENST00000539320 DNAJC5BQ9UF47 199 aa45.45■■■■■ 4.87
SCARB1-206ENST00000539320 BICRAQ9NZM4 1560 aa45.39■■■■■ 4.86
SCARB1-206ENST00000539320 SCRIBQ14160 1630 aa45■■■■■ 4.79
SCARB1-206ENST00000539320 SHROOM4Q9ULL8 1493 aa44.91■■■■■ 4.78
SCARB1-206ENST00000539320 EIF4G1Q04637 1599 aaKnown RBP44.26■■■■■ 4.68
SCARB1-206ENST00000539320 CC2D2AQ9P2K1 1620 aa44.24■■■■■ 4.67
SCARB1-206ENST00000539320 CECR2Q9BXF3 1484 aa44.06■■■■■ 4.64
SCARB1-206ENST00000539320 SMARCA4P51532 1647 aa42.97■■■■■ 4.47
SCARB1-206ENST00000539320 NCAPD3P42695 1498 aa42.95■■■■■ 4.47
SCARB1-206ENST00000539320 ATAD2BQ9ULI0 1458 aa42.9■■■■■ 4.46
SCARB1-206ENST00000539320 SMARCA2P51531 1590 aa42.82■■■■■ 4.45
SCARB1-206ENST00000539320 BAZ1AQ9NRL2 1556 aaPredicted RBP42.82■■■■■ 4.45
SCARB1-206ENST00000539320 HMGXB3Q12766 1538 aa42.74■■■■■ 4.43
SCARB1-206ENST00000539320 PEG3Q9GZU2 1588 aa42.56■■■■■ 4.4
SCARB1-206ENST00000539320 BAZ1BQ9UIG0 1483 aaKnown RBP42.52■■■■■ 4.4
SCARB1-206ENST00000539320 MROH2BQ7Z745 1585 aa42.5■■■■■ 4.39
SCARB1-206ENST00000539320 ERCC6Q03468 1493 aa42.25■■■■■ 4.35
SCARB1-206ENST00000539320 NESP48681 1621 aa42.14■■■■■ 4.34
SCARB1-206ENST00000539320 CUX2O14529 1486 aa42.06■■■■■ 4.32
SCARB1-206ENST00000539320 WIZO95785 1651 aa42■■■■■ 4.31
SCARB1-206ENST00000539320 LAMC3Q9Y6N6 1575 aa41.96■■■■■ 4.31
SCARB1-206ENST00000539320 RSF1Q96T23 1441 aaPredicted RBP41.76■■■■■ 4.28
SCARB1-206ENST00000539320 THOC2Q8NI27 1593 aaKnown RBP41.7■■■■■ 4.27
SCARB1-206ENST00000539320 PDS5BQ9NTI5 1447 aa41.68■■■■■ 4.26
SCARB1-206ENST00000539320 CADPSQ9ULU8 1353 aa41.66■■■■■ 4.26
SCARB1-206ENST00000539320 KIF21AQ7Z4S6 1674 aa41.64■■■■■ 4.26
SCARB1-206ENST00000539320 TOP2AP11388 1531 aaKnown RBP41.56■■■■■ 4.24
SCARB1-206ENST00000539320 DNAJC5Q9H3Z4 198 aa41.47■■■■■ 4.23
SCARB1-206ENST00000539320 MRC2Q9UBG0 1479 aa41.33■■■■■ 4.21
SCARB1-206ENST00000539320 CFTRP13569 1480 aa41.29■■■■■ 4.2
SCARB1-206ENST00000539320 CEP164Q9UPV0 1460 aa41.24■■■■■ 4.19
SCARB1-206ENST00000539320 WDR62O43379 1518 aa41.22■■■■■ 4.19
SCARB1-206ENST00000539320 FANCD2Q9BXW9 1451 aa41.21■■■■■ 4.19
SCARB1-206ENST00000539320 CCDC88BA6NC98 1476 aa41.02■■■■■ 4.16
SCARB1-206ENST00000539320 PRDM2Q13029 1718 aa40.95■■■■■ 4.15
SCARB1-206ENST00000539320 URB2Q14146 1524 aaKnown RBP40.85■■■■■ 4.13
SCARB1-206ENST00000539320 TOPBP1Q92547 1522 aa40.48■■■■■ 4.07
SCARB1-206ENST00000539320 ABCC8Q09428 1581 aa40.42■■■■■ 4.06
SCARB1-206ENST00000539320 IFT140Q96RY7 1462 aa40.4■■■■■ 4.06
SCARB1-206ENST00000539320 DNMBPQ6XZF7 1577 aa40.4■■■■■ 4.06
SCARB1-206ENST00000539320 ZNF608Q9ULD9 1512 aaPredicted RBP40.26■■■■■ 4.04
SCARB1-206ENST00000539320 SUPT5HO00267 1087 aaKnown RBP40.14■■■■■ 4.02
SCARB1-206ENST00000539320 EIF4G3O43432 1585 aaKnown RBP40.11■■■■■ 4.01
SCARB1-206ENST00000539320 OSCARQ8IYS5 282 aa40.1■■■■■ 4.01
SCARB1-206ENST00000539320 POLA1P09884 1462 aaPredicted RBP40.1■■■■■ 4.01
SCARB1-206ENST00000539320 TARBP1Q13395 1621 aaKnown RBP40.09■■■■■ 4.01
SCARB1-206ENST00000539320 CUX1P39880 1505 aa39.93■■■■□ 3.98
SCARB1-206ENST00000539320 AQRO60306 1485 aaKnown RBP eCLIP39.92■■■■□ 3.981e-8■■■■□ 22
SCARB1-206ENST00000539320 FGD5Q6ZNL6 1462 aa39.91■■■■□ 3.98
SCARB1-206ENST00000539320 RAD54L2Q9Y4B4 1467 aa39.91■■■■□ 3.98
SCARB1-206ENST00000539320 SOGA1O94964 1423 aa39.88■■■■□ 3.97
SCARB1-206ENST00000539320 TRIM41Q8WV44 630 aa39.83■■■■□ 3.97
SCARB1-206ENST00000539320 WDR97A6NE52 1622 aa39.76■■■■□ 3.96
SCARB1-206ENST00000539320 TDRD9Q8NDG6 1382 aaKnown RBP39.73■■■■□ 3.95
SCARB1-206ENST00000539320 CHD1O14646 1710 aa39.71■■■■□ 3.95
SCARB1-206ENST00000539320 RIMBP3CA6NJZ7 1639 aa39.62■■■■□ 3.93
SCARB1-206ENST00000539320 RIMBP3BA6NNM3 1639 aa39.62■■■■□ 3.93
SCARB1-206ENST00000539320 RIMBP3Q9UFD9 1639 aa39.62■■■■□ 3.93
SCARB1-206ENST00000539320 SNAPC4Q5SXM2 1469 aa39.59■■■■□ 3.93
SCARB1-206ENST00000539320 FBLN2P98095 1184 aa39.55■■■■□ 3.92
SCARB1-206ENST00000539320 ARHGEF11O15085 1522 aa39.55■■■■□ 3.92
SCARB1-206ENST00000539320 GRIN2BQ13224 1484 aa39.53■■■■□ 3.92
SCARB1-206ENST00000539320 MAGI1Q96QZ7 1491 aaPredicted RBP39.51■■■■□ 3.92
SCARB1-206ENST00000539320 ABCA10Q8WWZ4 1543 aa39.49■■■■□ 3.91
SCARB1-206ENST00000539320 GAPVD1Q14C86 1478 aa39.43■■■■□ 3.9
SCARB1-206ENST00000539320 PBRM1Q86U86 1689 aa39.41■■■■□ 3.9
SCARB1-206ENST00000539320 WRNQ14191 1432 aaPredicted RBP eCLIP39.41■■■■□ 3.9
SCARB1-206ENST00000539320 BIVM-ERCC5R4GMW8 1640 aa39.41■■■■□ 3.9
SCARB1-206ENST00000539320 TOP2BQ02880 1626 aa39.4■■■■□ 3.9
SCARB1-206ENST00000539320 ABCA5Q8WWZ7 1642 aa39.4■■■■□ 3.9
SCARB1-206ENST00000539320 SYNJ1O43426 1573 aa39.37■■■■□ 3.89
SCARB1-206ENST00000539320 SYNJ2O15056 1496 aa39.36■■■■□ 3.89
SCARB1-206ENST00000539320 CHMP7Q8WUX9 453 aaPredicted RBP39.34■■■■□ 3.89
SCARB1-206ENST00000539320 CLASP1Q7Z460 1538 aa39.3■■■■□ 3.88
SCARB1-206ENST00000539320 ARAP1Q96P48 1450 aa39.19■■■■□ 3.86
SCARB1-206ENST00000539320 CYB5RLQ6IPT4 315 aa39.13■■■■□ 3.85
SCARB1-206ENST00000539320 ADAMTS12P58397 1594 aa39.1■■■■□ 3.85
SCARB1-206ENST00000539320 GRIN2AQ12879 1464 aa39.03■■■■□ 3.84
SCARB1-206ENST00000539320 ERICH3Q5RHP9 1530 aa39■■■■□ 3.83
SCARB1-206ENST00000539320 FHAD1B1AJZ9 1412 aa38.96■■■■□ 3.83
SCARB1-206ENST00000539320 NUP160Q12769 1436 aa38.89■■■■□ 3.82
SCARB1-206ENST00000539320 CEP170Q5SW79 1584 aa38.87■■■■□ 3.81
SCARB1-206ENST00000539320 SHROOM2Q13796 1616 aa38.67■■■■□ 3.78
SCARB1-206ENST00000539320 ERCC6L2Q5T890 1561 aa38.66■■■■□ 3.78
SCARB1-206ENST00000539320 KIF27Q86VH2 1401 aa38.63■■■■□ 3.78
SCARB1-206ENST00000539320 TRHP20396 242 aaPredicted RBP38.57■■■■□ 3.76
SCARB1-206ENST00000539320 RUSC2Q8N2Y8 1516 aa38.53■■■■□ 3.76
SCARB1-206ENST00000539320 CUL7Q14999 1698 aa38.52■■■■□ 3.76
SCARB1-206ENST00000539320 IGF1RP08069 1367 aa38.52■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms