RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 NISCHQ9Y2I1 1504 aa34.37■■■■□ 3.09
SS18-204ENST00000539244 ABCC9O60706 1549 aa30.93■■■□□ 2.54
SS18-204ENST00000539244 CCDC180Q9P1Z9 1646 aa30.92■■■□□ 2.54
SS18-204ENST00000539244 RB1CC1Q8TDY2 1594 aa29.45■■■□□ 2.31
SS18-204ENST00000539244 NACADO15069 1562 aa29.25■■■□□ 2.27
SS18-204ENST00000539244 DNAJC5BQ9UF47 199 aa29.11■■■□□ 2.25
SS18-204ENST00000539244 DCAF8L2P0C7V8 631 aa28.9■■■□□ 2.22
SS18-204ENST00000539244 MYO15BQ96JP2 1530 aa28.87■■■□□ 2.21
SS18-204ENST00000539244 UNC13AQ9UPW8 1703 aa28.78■■■□□ 2.2
SS18-204ENST00000539244 PABPN1Q86U42 306 aaKnown RBP eCLIP28.74■■■□□ 2.19
SS18-204ENST00000539244 BICRAQ9NZM4 1560 aa28.61■■■□□ 2.17
SS18-204ENST00000539244 ZCCHC6Q5VYS8 1495 aaKnown RBP28.47■■■□□ 2.15
SS18-204ENST00000539244 DCAF1Q9Y4B6 1507 aa28.44■■■□□ 2.14
SS18-204ENST00000539244 SHROOM4Q9ULL8 1493 aa28.28■■■□□ 2.12
SS18-204ENST00000539244 SCRIBQ14160 1630 aa28.07■■■□□ 2.08
SS18-204ENST00000539244 CC2D2AQ9P2K1 1620 aa27.98■■■□□ 2.07
SS18-204ENST00000539244 EIF4G1Q04637 1599 aaKnown RBP27.9■■■□□ 2.06
SS18-204ENST00000539244 CECR2Q9BXF3 1484 aa27.9■■■□□ 2.06
SS18-204ENST00000539244 NCAPD3P42695 1498 aa27■■□□□ 1.91
SS18-204ENST00000539244 ATAD2BQ9ULI0 1458 aa26.88■■□□□ 1.89
SS18-204ENST00000539244 DNAJC5Q9H3Z4 198 aa26.85■■□□□ 1.89
SS18-204ENST00000539244 SMARCA4P51532 1647 aa26.83■■□□□ 1.88
SS18-204ENST00000539244 SMARCA2P51531 1590 aa26.81■■□□□ 1.88
SS18-204ENST00000539244 HMGXB3Q12766 1538 aa26.8■■□□□ 1.88
SS18-204ENST00000539244 CUX2O14529 1486 aa26.77■■□□□ 1.88
SS18-204ENST00000539244 ERCC6Q03468 1493 aa26.71■■□□□ 1.87
SS18-204ENST00000539244 BAZ1AQ9NRL2 1556 aaPredicted RBP26.69■■□□□ 1.86
SS18-204ENST00000539244 PEG3Q9GZU2 1588 aa26.63■■□□□ 1.85
SS18-204ENST00000539244 BAZ1BQ9UIG0 1483 aaKnown RBP26.6■■□□□ 1.85
SS18-204ENST00000539244 NESP48681 1621 aa26.54■■□□□ 1.84
SS18-204ENST00000539244 MROH2BQ7Z745 1585 aa26.46■■□□□ 1.83
SS18-204ENST00000539244 LAMC3Q9Y6N6 1575 aa26.41■■□□□ 1.82
SS18-204ENST00000539244 THOC2Q8NI27 1593 aaKnown RBP26.36■■□□□ 1.81
SS18-204ENST00000539244 PDS5BQ9NTI5 1447 aa26.23■■□□□ 1.79
SS18-204ENST00000539244 KIF21AQ7Z4S6 1674 aa26.22■■□□□ 1.79
SS18-204ENST00000539244 CADPSQ9ULU8 1353 aa26.16■■□□□ 1.78
SS18-204ENST00000539244 WIZO95785 1651 aa26.12■■□□□ 1.77
SS18-204ENST00000539244 MRC2Q9UBG0 1479 aa26.02■■□□□ 1.76
SS18-204ENST00000539244 WDR62O43379 1518 aa25.98■■□□□ 1.75
SS18-204ENST00000539244 RSF1Q96T23 1441 aaPredicted RBP25.88■■□□□ 1.73
SS18-204ENST00000539244 CEP164Q9UPV0 1460 aa25.88■■□□□ 1.73
SS18-204ENST00000539244 CFTRP13569 1480 aa25.85■■□□□ 1.73
SS18-204ENST00000539244 FANCD2Q9BXW9 1451 aa25.84■■□□□ 1.73
SS18-204ENST00000539244 TOP2AP11388 1531 aaKnown RBP25.81■■□□□ 1.72
SS18-204ENST00000539244 URB2Q14146 1524 aaKnown RBP25.64■■□□□ 1.7
SS18-204ENST00000539244 PRDM2Q13029 1718 aa25.59■■□□□ 1.69
SS18-204ENST00000539244 TRIM41Q8WV44 630 aa25.53■■□□□ 1.68
SS18-204ENST00000539244 CCDC88BA6NC98 1476 aa25.5■■□□□ 1.67
SS18-204ENST00000539244 OSCARQ8IYS5 282 aa25.48■■□□□ 1.67
SS18-204ENST00000539244 IFT140Q96RY7 1462 aa25.38■■□□□ 1.65
SS18-204ENST00000539244 TOPBP1Q92547 1522 aa25.35■■□□□ 1.65
SS18-204ENST00000539244 ZNF608Q9ULD9 1512 aaPredicted RBP25.32■■□□□ 1.64
SS18-204ENST00000539244 ABCC8Q09428 1581 aa25.31■■□□□ 1.64
SS18-204ENST00000539244 DNMBPQ6XZF7 1577 aa25.26■■□□□ 1.63
SS18-204ENST00000539244 EIF4G3O43432 1585 aaKnown RBP25.19■■□□□ 1.62
SS18-204ENST00000539244 RIMBP3CA6NJZ7 1639 aa25.17■■□□□ 1.62
SS18-204ENST00000539244 RIMBP3BA6NNM3 1639 aa25.17■■□□□ 1.62
SS18-204ENST00000539244 RIMBP3Q9UFD9 1639 aa25.17■■□□□ 1.62
SS18-204ENST00000539244 TARBP1Q13395 1621 aaKnown RBP25.15■■□□□ 1.62
SS18-204ENST00000539244 ARHGEF11O15085 1522 aa25.1■■□□□ 1.61
SS18-204ENST00000539244 POLA1P09884 1462 aaPredicted RBP25.09■■□□□ 1.61
SS18-204ENST00000539244 AQRO60306 1485 aaKnown RBP eCLIP25.07■■□□□ 1.63e-6■■■■□ 24.5
SS18-204ENST00000539244 CHD1O14646 1710 aa25.01■■□□□ 1.59
SS18-204ENST00000539244 RAD54L2Q9Y4B4 1467 aa24.96■■□□□ 1.59
SS18-204ENST00000539244 SOGA1O94964 1423 aa24.95■■□□□ 1.58
SS18-204ENST00000539244 WDR97A6NE52 1622 aa24.94■■□□□ 1.58
SS18-204ENST00000539244 FGD5Q6ZNL6 1462 aa24.89■■□□□ 1.58
SS18-204ENST00000539244 TDRD9Q8NDG6 1382 aaKnown RBP24.89■■□□□ 1.57
SS18-204ENST00000539244 CUX1P39880 1505 aa24.87■■□□□ 1.57
SS18-204ENST00000539244 FBLN2P98095 1184 aa24.86■■□□□ 1.57
SS18-204ENST00000539244 CYB5RLQ6IPT4 315 aa24.85■■□□□ 1.57
SS18-204ENST00000539244 ARAP1Q96P48 1450 aa24.84■■□□□ 1.57
SS18-204ENST00000539244 SNAPC4Q5SXM2 1469 aa24.83■■□□□ 1.56
SS18-204ENST00000539244 MAGI1Q96QZ7 1491 aaPredicted RBP24.79■■□□□ 1.56
SS18-204ENST00000539244 CLASP1Q7Z460 1538 aa24.77■■□□□ 1.56
SS18-204ENST00000539244 GRIN2BQ13224 1484 aa24.77■■□□□ 1.56
SS18-204ENST00000539244 SYNJ1O43426 1573 aa24.71■■□□□ 1.55
SS18-204ENST00000539244 CHMP7Q8WUX9 453 aaPredicted RBP24.71■■□□□ 1.55
SS18-204ENST00000539244 SYNJ2O15056 1496 aa24.7■■□□□ 1.55
SS18-204ENST00000539244 GAPVD1Q14C86 1478 aa24.65■■□□□ 1.54
SS18-204ENST00000539244 PBRM1Q86U86 1689 aa24.65■■□□□ 1.54
SS18-204ENST00000539244 ABCA10Q8WWZ4 1543 aa24.64■■□□□ 1.53
SS18-204ENST00000539244 ABCA5Q8WWZ7 1642 aa24.61■■□□□ 1.53
SS18-204ENST00000539244 TRHP20396 242 aaPredicted RBP24.58■■□□□ 1.53
SS18-204ENST00000539244 SUPT5HO00267 1087 aaKnown RBP24.53■■□□□ 1.52
SS18-204ENST00000539244 WRNQ14191 1432 aaPredicted RBP eCLIP24.5■■□□□ 1.51
SS18-204ENST00000539244 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
SS18-204ENST00000539244 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
SS18-204ENST00000539244 GRIN2AQ12879 1464 aa24.45■■□□□ 1.5
SS18-204ENST00000539244 ADAMTS12P58397 1594 aa24.42■■□□□ 1.5
SS18-204ENST00000539244 NUP160Q12769 1436 aa24.4■■□□□ 1.5
SS18-204ENST00000539244 CEP170Q5SW79 1584 aa24.35■■□□□ 1.49
SS18-204ENST00000539244 FHAD1B1AJZ9 1412 aa24.35■■□□□ 1.49
SS18-204ENST00000539244 ERICH3Q5RHP9 1530 aa24.34■■□□□ 1.49
SS18-204ENST00000539244 ERCC6L2Q5T890 1561 aa24.33■■□□□ 1.48
SS18-204ENST00000539244 SHROOM2Q13796 1616 aa24.3■■□□□ 1.48
SS18-204ENST00000539244 PRG4Q92954 1404 aaPredicted RBP24.11■■□□□ 1.45
SS18-204ENST00000539244 JPH4Q96JJ6 628 aa24.09■■□□□ 1.45
SS18-204ENST00000539244 RUSC2Q8N2Y8 1516 aa24.09■■□□□ 1.45
SS18-204ENST00000539244 KIF13AQ9H1H9 1805 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms