RNA–Protein interactions for RNA: ENST00000539212.5

PDCD2-207, Transcript of programmed cell death 2, humanhuman

TSL 3

Gene PDCD2, Length 445 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD2-207ENST00000539212 NISCHQ9Y2I1 1504 aa43.42■■■■■ 4.54
PDCD2-207ENST00000539212 CCDC180Q9P1Z9 1646 aa39■■■■□ 3.83
PDCD2-207ENST00000539212 ABCC9O60706 1549 aa38.94■■■■□ 3.82
PDCD2-207ENST00000539212 RB1CC1Q8TDY2 1594 aa37.04■■■■□ 3.52
PDCD2-207ENST00000539212 NACADO15069 1562 aa36.76■■■■□ 3.48
PDCD2-207ENST00000539212 DCAF8L2P0C7V8 631 aa36.56■■■■□ 3.44
PDCD2-207ENST00000539212 DNAJC5BQ9UF47 199 aa36.44■■■■□ 3.42
PDCD2-207ENST00000539212 UNC13AQ9UPW8 1703 aa36.42■■■■□ 3.42
PDCD2-207ENST00000539212 PABPN1Q86U42 306 aaKnown RBP eCLIP36.21■■■■□ 3.39
PDCD2-207ENST00000539212 MYO15BQ96JP2 1530 aa36.21■■■■□ 3.39
PDCD2-207ENST00000539212 BICRAQ9NZM4 1560 aa36.04■■■■□ 3.36
PDCD2-207ENST00000539212 ZCCHC6Q5VYS8 1495 aaKnown RBP36.02■■■■□ 3.36
PDCD2-207ENST00000539212 DCAF1Q9Y4B6 1507 aa35.8■■■■□ 3.32
PDCD2-207ENST00000539212 SCRIBQ14160 1630 aa35.61■■■■□ 3.29
PDCD2-207ENST00000539212 SHROOM4Q9ULL8 1493 aa35.39■■■■□ 3.26
PDCD2-207ENST00000539212 CC2D2AQ9P2K1 1620 aa35.21■■■■□ 3.23
PDCD2-207ENST00000539212 EIF4G1Q04637 1599 aaKnown RBP35.12■■■■□ 3.21
PDCD2-207ENST00000539212 CECR2Q9BXF3 1484 aa35.02■■■■□ 3.2
PDCD2-207ENST00000539212 SMARCA4P51532 1647 aa33.93■■■■□ 3.02
PDCD2-207ENST00000539212 NCAPD3P42695 1498 aa33.9■■■■□ 3.02
PDCD2-207ENST00000539212 ATAD2BQ9ULI0 1458 aa33.86■■■■□ 3.01
PDCD2-207ENST00000539212 SMARCA2P51531 1590 aa33.76■■■□□ 2.99
PDCD2-207ENST00000539212 HMGXB3Q12766 1538 aa33.73■■■□□ 2.99
PDCD2-207ENST00000539212 BAZ1AQ9NRL2 1556 aaPredicted RBP33.69■■■□□ 2.98
PDCD2-207ENST00000539212 ERCC6Q03468 1493 aa33.56■■■□□ 2.96
PDCD2-207ENST00000539212 BAZ1BQ9UIG0 1483 aaKnown RBP33.56■■■□□ 2.96
PDCD2-207ENST00000539212 PEG3Q9GZU2 1588 aa33.53■■■□□ 2.96
PDCD2-207ENST00000539212 MROH2BQ7Z745 1585 aa33.51■■■□□ 2.95
PDCD2-207ENST00000539212 NESP48681 1621 aa33.5■■■□□ 2.95
PDCD2-207ENST00000539212 CUX2O14529 1486 aa33.44■■■□□ 2.94
PDCD2-207ENST00000539212 DNAJC5Q9H3Z4 198 aa33.3■■■□□ 2.92
PDCD2-207ENST00000539212 LAMC3Q9Y6N6 1575 aa33.2■■■□□ 2.91
PDCD2-207ENST00000539212 THOC2Q8NI27 1593 aaKnown RBP33.18■■■□□ 2.9
PDCD2-207ENST00000539212 WIZO95785 1651 aa33.18■■■□□ 2.9
PDCD2-207ENST00000539212 KIF21AQ7Z4S6 1674 aa33.16■■■□□ 2.9
PDCD2-207ENST00000539212 PDS5BQ9NTI5 1447 aa32.91■■■□□ 2.86
PDCD2-207ENST00000539212 CADPSQ9ULU8 1353 aa32.86■■■□□ 2.85
PDCD2-207ENST00000539212 RSF1Q96T23 1441 aaPredicted RBP32.77■■■□□ 2.84
PDCD2-207ENST00000539212 MRC2Q9UBG0 1479 aa32.72■■■□□ 2.83
PDCD2-207ENST00000539212 TOP2AP11388 1531 aaKnown RBP32.68■■■□□ 2.82
PDCD2-207ENST00000539212 WDR62O43379 1518 aa32.67■■■□□ 2.82
PDCD2-207ENST00000539212 CEP164Q9UPV0 1460 aa32.59■■■□□ 2.81
PDCD2-207ENST00000539212 FANCD2Q9BXW9 1451 aa32.56■■■□□ 2.8
PDCD2-207ENST00000539212 CFTRP13569 1480 aa32.54■■■□□ 2.8
PDCD2-207ENST00000539212 PRDM2Q13029 1718 aa32.42■■■□□ 2.78
PDCD2-207ENST00000539212 URB2Q14146 1524 aaKnown RBP32.35■■■□□ 2.77
PDCD2-207ENST00000539212 CCDC88BA6NC98 1476 aa32.28■■■□□ 2.76
PDCD2-207ENST00000539212 TOPBP1Q92547 1522 aa31.98■■■□□ 2.71
PDCD2-207ENST00000539212 TRIM41Q8WV44 630 aa31.96■■■□□ 2.71
PDCD2-207ENST00000539212 ZNF608Q9ULD9 1512 aaPredicted RBP31.95■■■□□ 2.7
PDCD2-207ENST00000539212 IFT140Q96RY7 1462 aa31.91■■■□□ 2.7
PDCD2-207ENST00000539212 DNMBPQ6XZF7 1577 aa31.88■■■□□ 2.69
PDCD2-207ENST00000539212 OSCARQ8IYS5 282 aa31.84■■■□□ 2.69
PDCD2-207ENST00000539212 EIF4G3O43432 1585 aaKnown RBP31.82■■■□□ 2.68
PDCD2-207ENST00000539212 ABCC8Q09428 1581 aa31.79■■■□□ 2.68
PDCD2-207ENST00000539212 TARBP1Q13395 1621 aaKnown RBP31.74■■■□□ 2.67
PDCD2-207ENST00000539212 POLA1P09884 1462 aaPredicted RBP31.65■■■□□ 2.66
PDCD2-207ENST00000539212 RIMBP3CA6NJZ7 1639 aa31.64■■■□□ 2.66
PDCD2-207ENST00000539212 RIMBP3BA6NNM3 1639 aa31.64■■■□□ 2.66
PDCD2-207ENST00000539212 RIMBP3Q9UFD9 1639 aa31.64■■■□□ 2.66
PDCD2-207ENST00000539212 CHD1O14646 1710 aa31.63■■■□□ 2.65
PDCD2-207ENST00000539212 AQRO60306 1485 aaKnown RBP eCLIP31.61■■■□□ 2.659e-7■■■■■ 36.8
PDCD2-207ENST00000539212 RAD54L2Q9Y4B4 1467 aa31.57■■■□□ 2.64
PDCD2-207ENST00000539212 ARHGEF11O15085 1522 aa31.49■■■□□ 2.63
PDCD2-207ENST00000539212 FGD5Q6ZNL6 1462 aa31.48■■■□□ 2.63
PDCD2-207ENST00000539212 CUX1P39880 1505 aa31.48■■■□□ 2.63
PDCD2-207ENST00000539212 SOGA1O94964 1423 aa31.44■■■□□ 2.62
PDCD2-207ENST00000539212 TDRD9Q8NDG6 1382 aaKnown RBP31.41■■■□□ 2.62
PDCD2-207ENST00000539212 WDR97A6NE52 1622 aa31.36■■■□□ 2.61
PDCD2-207ENST00000539212 SUPT5HO00267 1087 aaKnown RBP31.35■■■□□ 2.61
PDCD2-207ENST00000539212 FBLN2P98095 1184 aa31.34■■■□□ 2.61
PDCD2-207ENST00000539212 SNAPC4Q5SXM2 1469 aa31.33■■■□□ 2.61
PDCD2-207ENST00000539212 PBRM1Q86U86 1689 aa31.25■■■□□ 2.59
PDCD2-207ENST00000539212 ARAP1Q96P48 1450 aa31.2■■■□□ 2.58
PDCD2-207ENST00000539212 GRIN2BQ13224 1484 aa31.17■■■□□ 2.58
PDCD2-207ENST00000539212 MAGI1Q96QZ7 1491 aaPredicted RBP31.17■■■□□ 2.58
PDCD2-207ENST00000539212 CLASP1Q7Z460 1538 aa31.17■■■□□ 2.58
PDCD2-207ENST00000539212 CYB5RLQ6IPT4 315 aa31.16■■■□□ 2.58
PDCD2-207ENST00000539212 ABCA5Q8WWZ7 1642 aa31.13■■■□□ 2.57
PDCD2-207ENST00000539212 SYNJ1O43426 1573 aa31.11■■■□□ 2.57
PDCD2-207ENST00000539212 SYNJ2O15056 1496 aa31.08■■■□□ 2.57
PDCD2-207ENST00000539212 GAPVD1Q14C86 1478 aa31.08■■■□□ 2.57
PDCD2-207ENST00000539212 ABCA10Q8WWZ4 1543 aa31.08■■■□□ 2.57
PDCD2-207ENST00000539212 CHMP7Q8WUX9 453 aaPredicted RBP31.07■■■□□ 2.56
PDCD2-207ENST00000539212 BIVM-ERCC5R4GMW8 1640 aa31.02■■■□□ 2.56
PDCD2-207ENST00000539212 TOP2BQ02880 1626 aa30.98■■■□□ 2.55
PDCD2-207ENST00000539212 WRNQ14191 1432 aaPredicted RBP eCLIP30.9■■■□□ 2.54
PDCD2-207ENST00000539212 ADAMTS12P58397 1594 aa30.89■■■□□ 2.54
PDCD2-207ENST00000539212 GRIN2AQ12879 1464 aa30.82■■■□□ 2.52
PDCD2-207ENST00000539212 TRHP20396 242 aaPredicted RBP30.8■■■□□ 2.52
PDCD2-207ENST00000539212 CEP170Q5SW79 1584 aa30.79■■■□□ 2.52
PDCD2-207ENST00000539212 ERCC6L2Q5T890 1561 aa30.76■■■□□ 2.52
PDCD2-207ENST00000539212 ERICH3Q5RHP9 1530 aa30.68■■■□□ 2.5
PDCD2-207ENST00000539212 NUP160Q12769 1436 aa30.68■■■□□ 2.5
PDCD2-207ENST00000539212 FHAD1B1AJZ9 1412 aa30.67■■■□□ 2.5
PDCD2-207ENST00000539212 SHROOM2Q13796 1616 aa30.63■■■□□ 2.49
PDCD2-207ENST00000539212 RUSC2Q8N2Y8 1516 aa30.47■■■□□ 2.47
PDCD2-207ENST00000539212 PRG4Q92954 1404 aaPredicted RBP30.39■■■□□ 2.45
PDCD2-207ENST00000539212 CUL7Q14999 1698 aa30.32■■■□□ 2.44
PDCD2-207ENST00000539212 JPH4Q96JJ6 628 aa30.29■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms