RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 NISCHQ9Y2I1 1504 aa46.76■■■■■ 5.08
CLIP1-211ENST00000539080 CCDC180Q9P1Z9 1646 aa41.79■■■■■ 4.28
CLIP1-211ENST00000539080 ABCC9O60706 1549 aa41.05■■■■■ 4.16
CLIP1-211ENST00000539080 RB1CC1Q8TDY2 1594 aa39.45■■■■□ 3.91
CLIP1-211ENST00000539080 NACADO15069 1562 aa39.33■■■■□ 3.89
CLIP1-211ENST00000539080 DCAF8L2P0C7V8 631 aa39.07■■■■□ 3.85
CLIP1-211ENST00000539080 MYO15BQ96JP2 1530 aa39.05■■■■□ 3.84
CLIP1-211ENST00000539080 ZCCHC6Q5VYS8 1495 aaKnown RBP38.89■■■■□ 3.82
CLIP1-211ENST00000539080 DCAF1Q9Y4B6 1507 aa38.73■■■■□ 3.79
CLIP1-211ENST00000539080 UNC13AQ9UPW8 1703 aa38.53■■■■□ 3.76
CLIP1-211ENST00000539080 PABPN1Q86U42 306 aaKnown RBP eCLIP38.26■■■■□ 3.72
CLIP1-211ENST00000539080 BICRAQ9NZM4 1560 aa38.23■■■■□ 3.71
CLIP1-211ENST00000539080 SCRIBQ14160 1630 aa37.99■■■■□ 3.67
CLIP1-211ENST00000539080 DNAJC5BQ9UF47 199 aa37.93■■■■□ 3.66
CLIP1-211ENST00000539080 SHROOM4Q9ULL8 1493 aa37.91■■■■□ 3.66
CLIP1-211ENST00000539080 EIF4G1Q04637 1599 aaKnown RBP37.25■■■■□ 3.55
CLIP1-211ENST00000539080 CC2D2AQ9P2K1 1620 aa37.18■■■■□ 3.54
CLIP1-211ENST00000539080 CECR2Q9BXF3 1484 aa36.96■■■■□ 3.51
CLIP1-211ENST00000539080 SMARCA4P51532 1647 aa36.36■■■■□ 3.41
CLIP1-211ENST00000539080 BAZ1AQ9NRL2 1556 aaPredicted RBP36.29■■■■□ 3.4
CLIP1-211ENST00000539080 NCAPD3P42695 1498 aa36.28■■■■□ 3.4
CLIP1-211ENST00000539080 ATAD2BQ9ULI0 1458 aa36.22■■■■□ 3.39
CLIP1-211ENST00000539080 SMARCA2P51531 1590 aa36.21■■■■□ 3.39
CLIP1-211ENST00000539080 HMGXB3Q12766 1538 aa36.1■■■■□ 3.37
CLIP1-211ENST00000539080 PEG3Q9GZU2 1588 aa36.06■■■■□ 3.36
CLIP1-211ENST00000539080 MROH2BQ7Z745 1585 aa35.99■■■■□ 3.35
CLIP1-211ENST00000539080 BAZ1BQ9UIG0 1483 aaKnown RBP35.92■■■■□ 3.34
CLIP1-211ENST00000539080 WIZO95785 1651 aa35.59■■■■□ 3.29
CLIP1-211ENST00000539080 RSF1Q96T23 1441 aaPredicted RBP35.47■■■■□ 3.27
CLIP1-211ENST00000539080 ERCC6Q03468 1493 aa35.45■■■■□ 3.27
CLIP1-211ENST00000539080 NESP48681 1621 aa35.43■■■■□ 3.26
CLIP1-211ENST00000539080 LAMC3Q9Y6N6 1575 aa35.4■■■■□ 3.26
CLIP1-211ENST00000539080 CUX2O14529 1486 aa35.25■■■■□ 3.23
CLIP1-211ENST00000539080 TOP2AP11388 1531 aaKnown RBP35.24■■■■□ 3.23
CLIP1-211ENST00000539080 CADPSQ9ULU8 1353 aa35.18■■■■□ 3.22
CLIP1-211ENST00000539080 PDS5BQ9NTI5 1447 aa35.15■■■■□ 3.22
CLIP1-211ENST00000539080 KIF21AQ7Z4S6 1674 aa35.05■■■■□ 3.2
CLIP1-211ENST00000539080 THOC2Q8NI27 1593 aaKnown RBP35.04■■■■□ 3.2
CLIP1-211ENST00000539080 CFTRP13569 1480 aa34.92■■■■□ 3.18
CLIP1-211ENST00000539080 MRC2Q9UBG0 1479 aa34.79■■■■□ 3.16
CLIP1-211ENST00000539080 CCDC88BA6NC98 1476 aa34.78■■■■□ 3.16
CLIP1-211ENST00000539080 CEP164Q9UPV0 1460 aa34.78■■■■□ 3.16
CLIP1-211ENST00000539080 FANCD2Q9BXW9 1451 aa34.77■■■■□ 3.16
CLIP1-211ENST00000539080 WDR62O43379 1518 aa34.71■■■■□ 3.15
CLIP1-211ENST00000539080 PRDM2Q13029 1718 aa34.69■■■■□ 3.14
CLIP1-211ENST00000539080 DNAJC5Q9H3Z4 198 aa34.48■■■■□ 3.11
CLIP1-211ENST00000539080 URB2Q14146 1524 aaKnown RBP34.43■■■■□ 3.1
CLIP1-211ENST00000539080 SUPT5HO00267 1087 aaKnown RBP34.24■■■■□ 3.07
CLIP1-211ENST00000539080 ABCC8Q09428 1581 aa34.23■■■■□ 3.07
CLIP1-211ENST00000539080 TOPBP1Q92547 1522 aa34.18■■■■□ 3.06
CLIP1-211ENST00000539080 DNMBPQ6XZF7 1577 aa34.15■■■■□ 3.06
CLIP1-211ENST00000539080 IFT140Q96RY7 1462 aa34.07■■■■□ 3.05
CLIP1-211ENST00000539080 ZNF608Q9ULD9 1512 aaPredicted RBP33.88■■■■□ 3.01
CLIP1-211ENST00000539080 POLA1P09884 1462 aaPredicted RBP33.87■■■■□ 3.01
CLIP1-211ENST00000539080 TARBP1Q13395 1621 aaKnown RBP33.85■■■■□ 3.01
CLIP1-211ENST00000539080 EIF4G3O43432 1585 aaKnown RBP33.79■■■■□ 3
CLIP1-211ENST00000539080 CUX1P39880 1505 aa33.79■■■■□ 3
CLIP1-211ENST00000539080 FGD5Q6ZNL6 1462 aa33.73■■■□□ 2.99
CLIP1-211ENST00000539080 SOGA1O94964 1423 aa33.71■■■□□ 2.99
CLIP1-211ENST00000539080 OSCARQ8IYS5 282 aa33.68■■■□□ 2.98
CLIP1-211ENST00000539080 RAD54L2Q9Y4B4 1467 aa33.68■■■□□ 2.98
CLIP1-211ENST00000539080 WDR97A6NE52 1622 aa33.65■■■□□ 2.98
CLIP1-211ENST00000539080 AQRO60306 1485 aaKnown RBP eCLIP33.65■■■□□ 2.98
CLIP1-211ENST00000539080 TDRD9Q8NDG6 1382 aaKnown RBP33.53■■■□□ 2.96
CLIP1-211ENST00000539080 BIVM-ERCC5R4GMW8 1640 aa33.47■■■□□ 2.95
CLIP1-211ENST00000539080 WRNQ14191 1432 aaPredicted RBP eCLIP33.46■■■□□ 2.959e-6■■■■■ 50.1
CLIP1-211ENST00000539080 TOP2BQ02880 1626 aa33.46■■■□□ 2.95
CLIP1-211ENST00000539080 ABCA10Q8WWZ4 1543 aa33.43■■■□□ 2.94
CLIP1-211ENST00000539080 CHD1O14646 1710 aa33.42■■■□□ 2.94
CLIP1-211ENST00000539080 SYNJ1O43426 1573 aa33.39■■■□□ 2.94
CLIP1-211ENST00000539080 GRIN2BQ13224 1484 aa33.39■■■□□ 2.94
CLIP1-211ENST00000539080 SNAPC4Q5SXM2 1469 aa33.36■■■□□ 2.93
CLIP1-211ENST00000539080 MAGI1Q96QZ7 1491 aaPredicted RBP33.36■■■□□ 2.93
CLIP1-211ENST00000539080 GAPVD1Q14C86 1478 aa33.33■■■□□ 2.93
CLIP1-211ENST00000539080 ABCA5Q8WWZ7 1642 aa33.32■■■□□ 2.92
CLIP1-211ENST00000539080 PBRM1Q86U86 1689 aa33.31■■■□□ 2.92
CLIP1-211ENST00000539080 FBLN2P98095 1184 aa33.28■■■□□ 2.92
CLIP1-211ENST00000539080 SYNJ2O15056 1496 aa33.21■■■□□ 2.91
CLIP1-211ENST00000539080 CHMP7Q8WUX9 453 aaPredicted RBP33.19■■■□□ 2.9
CLIP1-211ENST00000539080 RIMBP3CA6NJZ7 1639 aa33.18■■■□□ 2.9
CLIP1-211ENST00000539080 RIMBP3BA6NNM3 1639 aa33.18■■■□□ 2.9
CLIP1-211ENST00000539080 RIMBP3Q9UFD9 1639 aa33.18■■■□□ 2.9
CLIP1-211ENST00000539080 ARHGEF11O15085 1522 aa33.14■■■□□ 2.9
CLIP1-211ENST00000539080 TRIM41Q8WV44 630 aa33.13■■■□□ 2.89
CLIP1-211ENST00000539080 CLASP1Q7Z460 1538 aa33.07■■■□□ 2.88
CLIP1-211ENST00000539080 ERICH3Q5RHP9 1530 aa33.04■■■□□ 2.88
CLIP1-211ENST00000539080 ADAMTS12P58397 1594 aa33.01■■■□□ 2.88
CLIP1-211ENST00000539080 FHAD1B1AJZ9 1412 aa32.95■■■□□ 2.87
CLIP1-211ENST00000539080 GRIN2AQ12879 1464 aa32.95■■■□□ 2.87
CLIP1-211ENST00000539080 ARAP1Q96P48 1450 aa32.84■■■□□ 2.85
CLIP1-211ENST00000539080 NUP160Q12769 1436 aa32.83■■■□□ 2.85
CLIP1-211ENST00000539080 KIF27Q86VH2 1401 aa32.81■■■□□ 2.84
CLIP1-211ENST00000539080 CYB5RLQ6IPT4 315 aa32.79■■■□□ 2.84
CLIP1-211ENST00000539080 CEP170Q5SW79 1584 aa32.79■■■□□ 2.84
CLIP1-211ENST00000539080 CUL7Q14999 1698 aa32.69■■■□□ 2.82
CLIP1-211ENST00000539080 IGF1RP08069 1367 aa32.68■■■□□ 2.82
CLIP1-211ENST00000539080 SHROOM2Q13796 1616 aa32.64■■■□□ 2.82
CLIP1-211ENST00000539080 RUSC2Q8N2Y8 1516 aa32.55■■■□□ 2.8
CLIP1-211ENST00000539080 ERCC6L2Q5T890 1561 aa32.52■■■□□ 2.8
CLIP1-211ENST00000539080 CARMIL1Q5VZK9 1371 aa32.49■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms