RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 NISCHQ9Y2I1 1504 aa31.44■■■□□ 2.62
VAMP1-206ENST00000538970 ABCC9O60706 1549 aa28.48■■■□□ 2.15
VAMP1-206ENST00000538970 CCDC180Q9P1Z9 1646 aa28.21■■■□□ 2.11
VAMP1-206ENST00000538970 DNAJC5BQ9UF47 199 aa27.4■■□□□ 1.98
VAMP1-206ENST00000538970 RB1CC1Q8TDY2 1594 aa26.8■■□□□ 1.88
VAMP1-206ENST00000538970 NACADO15069 1562 aa26.63■■□□□ 1.85
VAMP1-206ENST00000538970 PABPN1Q86U42 306 aaKnown RBP eCLIP26.43■■□□□ 1.82
VAMP1-206ENST00000538970 DCAF8L2P0C7V8 631 aa26.4■■□□□ 1.82
VAMP1-206ENST00000538970 MYO15BQ96JP2 1530 aa26.32■■□□□ 1.8
VAMP1-206ENST00000538970 UNC13AQ9UPW8 1703 aa26.19■■□□□ 1.78
VAMP1-206ENST00000538970 ZCCHC6Q5VYS8 1495 aaKnown RBP26.1■■□□□ 1.77
VAMP1-206ENST00000538970 BICRAQ9NZM4 1560 aa26.06■■□□□ 1.76
VAMP1-206ENST00000538970 DCAF1Q9Y4B6 1507 aa26■■□□□ 1.75
VAMP1-206ENST00000538970 SHROOM4Q9ULL8 1493 aa25.73■■□□□ 1.71
VAMP1-206ENST00000538970 CECR2Q9BXF3 1484 aa25.69■■□□□ 1.7
VAMP1-206ENST00000538970 SCRIBQ14160 1630 aa25.69■■□□□ 1.7
VAMP1-206ENST00000538970 CC2D2AQ9P2K1 1620 aa25.66■■□□□ 1.7
VAMP1-206ENST00000538970 DNAJC5Q9H3Z4 198 aa25.55■■□□□ 1.68
VAMP1-206ENST00000538970 EIF4G1Q04637 1599 aaKnown RBP25.44■■□□□ 1.66
VAMP1-206ENST00000538970 CUX2O14529 1486 aa24.74■■□□□ 1.55
VAMP1-206ENST00000538970 NCAPD3P42695 1498 aa24.59■■□□□ 1.53
VAMP1-206ENST00000538970 ERCC6Q03468 1493 aa24.58■■□□□ 1.52
VAMP1-206ENST00000538970 ATAD2BQ9ULI0 1458 aa24.52■■□□□ 1.52
VAMP1-206ENST00000538970 SMARCA4P51532 1647 aa24.52■■□□□ 1.52
VAMP1-206ENST00000538970 SMARCA2P51531 1590 aa24.46■■□□□ 1.51
VAMP1-206ENST00000538970 HMGXB3Q12766 1538 aa24.44■■□□□ 1.5
VAMP1-206ENST00000538970 BAZ1AQ9NRL2 1556 aaPredicted RBP24.41■■□□□ 1.5
VAMP1-206ENST00000538970 PEG3Q9GZU2 1588 aa24.3■■□□□ 1.48
VAMP1-206ENST00000538970 NESP48681 1621 aa24.3■■□□□ 1.48
VAMP1-206ENST00000538970 BAZ1BQ9UIG0 1483 aaKnown RBP24.29■■□□□ 1.48
VAMP1-206ENST00000538970 MROH2BQ7Z745 1585 aa24.22■■□□□ 1.47
VAMP1-206ENST00000538970 TRIM41Q8WV44 630 aa24.2■■□□□ 1.46
VAMP1-206ENST00000538970 THOC2Q8NI27 1593 aaKnown RBP24.16■■□□□ 1.46
VAMP1-206ENST00000538970 LAMC3Q9Y6N6 1575 aa24.03■■□□□ 1.44
VAMP1-206ENST00000538970 WIZO95785 1651 aa23.92■■□□□ 1.42
VAMP1-206ENST00000538970 KIF21AQ7Z4S6 1674 aa23.92■■□□□ 1.42
VAMP1-206ENST00000538970 PDS5BQ9NTI5 1447 aa23.87■■□□□ 1.41
VAMP1-206ENST00000538970 CADPSQ9ULU8 1353 aa23.83■■□□□ 1.41
VAMP1-206ENST00000538970 RSF1Q96T23 1441 aaPredicted RBP23.74■■□□□ 1.39
VAMP1-206ENST00000538970 MRC2Q9UBG0 1479 aa23.68■■□□□ 1.38
VAMP1-206ENST00000538970 TOP2AP11388 1531 aaKnown RBP23.65■■□□□ 1.38
VAMP1-206ENST00000538970 WDR62O43379 1518 aa23.64■■□□□ 1.38
VAMP1-206ENST00000538970 CEP164Q9UPV0 1460 aa23.6■■□□□ 1.37
VAMP1-206ENST00000538970 CFTRP13569 1480 aa23.59■■□□□ 1.37
VAMP1-206ENST00000538970 FANCD2Q9BXW9 1451 aa23.56■■□□□ 1.36
VAMP1-206ENST00000538970 OSCARQ8IYS5 282 aa23.49■■□□□ 1.35
VAMP1-206ENST00000538970 URB2Q14146 1524 aaKnown RBP23.38■■□□□ 1.33
VAMP1-206ENST00000538970 CCDC88BA6NC98 1476 aa23.36■■□□□ 1.33
VAMP1-206ENST00000538970 PRDM2Q13029 1718 aa23.35■■□□□ 1.33
VAMP1-206ENST00000538970 RIMBP3CA6NJZ7 1639 aa23.34■■□□□ 1.33
VAMP1-206ENST00000538970 RIMBP3BA6NNM3 1639 aa23.34■■□□□ 1.33
VAMP1-206ENST00000538970 RIMBP3Q9UFD9 1639 aa23.34■■□□□ 1.33
VAMP1-206ENST00000538970 ARHGEF11O15085 1522 aa23.18■■□□□ 1.3
VAMP1-206ENST00000538970 TOPBP1Q92547 1522 aa23.13■■□□□ 1.29
VAMP1-206ENST00000538970 IFT140Q96RY7 1462 aa23.12■■□□□ 1.29
VAMP1-206ENST00000538970 ZNF608Q9ULD9 1512 aaPredicted RBP23.08■■□□□ 1.29
VAMP1-206ENST00000538970 ABCC8Q09428 1581 aa23.07■■□□□ 1.28
VAMP1-206ENST00000538970 DNMBPQ6XZF7 1577 aa23.06■■□□□ 1.28
VAMP1-206ENST00000538970 CYB5RLQ6IPT4 315 aa23.05■■□□□ 1.28
VAMP1-206ENST00000538970 TRHP20396 242 aaPredicted RBP23■■□□□ 1.27
VAMP1-206ENST00000538970 EIF4G3O43432 1585 aaKnown RBP22.97■■□□□ 1.27
VAMP1-206ENST00000538970 TARBP1Q13395 1621 aaKnown RBP22.93■■□□□ 1.26
VAMP1-206ENST00000538970 ARAP1Q96P48 1450 aa22.93■■□□□ 1.26
VAMP1-206ENST00000538970 POLA1P09884 1462 aaPredicted RBP22.91■■□□□ 1.26
VAMP1-206ENST00000538970 CHD1O14646 1710 aa22.85■■□□□ 1.25
VAMP1-206ENST00000538970 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.25
VAMP1-206ENST00000538970 RAD54L2Q9Y4B4 1467 aa22.8■■□□□ 1.24
VAMP1-206ENST00000538970 AEBP2Q6ZN18 517 aaPredicted RBP22.79■■□□□ 1.24
VAMP1-206ENST00000538970 FGD5Q6ZNL6 1462 aa22.77■■□□□ 1.24
VAMP1-206ENST00000538970 CUX1P39880 1505 aa22.77■■□□□ 1.24
VAMP1-206ENST00000538970 SOGA1O94964 1423 aa22.76■■□□□ 1.23
VAMP1-206ENST00000538970 WDR97A6NE52 1622 aa22.72■■□□□ 1.23
VAMP1-206ENST00000538970 FBLN2P98095 1184 aa22.72■■□□□ 1.23
VAMP1-206ENST00000538970 TDRD9Q8NDG6 1382 aaKnown RBP22.72■■□□□ 1.23
VAMP1-206ENST00000538970 SUPT5HO00267 1087 aaKnown RBP22.65■■□□□ 1.22
VAMP1-206ENST00000538970 SNAPC4Q5SXM2 1469 aa22.65■■□□□ 1.22
VAMP1-206ENST00000538970 MAGI1Q96QZ7 1491 aaPredicted RBP22.6■■□□□ 1.21
VAMP1-206ENST00000538970 GRIN2BQ13224 1484 aa22.59■■□□□ 1.21
VAMP1-206ENST00000538970 CLASP1Q7Z460 1538 aa22.57■■□□□ 1.2
VAMP1-206ENST00000538970 SYNJ2O15056 1496 aa22.52■■□□□ 1.2
VAMP1-206ENST00000538970 ABCA10Q8WWZ4 1543 aa22.52■■□□□ 1.19
VAMP1-206ENST00000538970 SYNJ1O43426 1573 aa22.51■■□□□ 1.19
VAMP1-206ENST00000538970 GAPVD1Q14C86 1478 aa22.51■■□□□ 1.19
VAMP1-206ENST00000538970 PBRM1Q86U86 1689 aa22.51■■□□□ 1.19
VAMP1-206ENST00000538970 CHMP7Q8WUX9 453 aaPredicted RBP22.5■■□□□ 1.19
VAMP1-206ENST00000538970 ABCA5Q8WWZ7 1642 aa22.49■■□□□ 1.19
VAMP1-206ENST00000538970 BIVM-ERCC5R4GMW8 1640 aa22.42■■□□□ 1.18
VAMP1-206ENST00000538970 TOP2BQ02880 1626 aa22.42■■□□□ 1.18
VAMP1-206ENST00000538970 WRNQ14191 1432 aaPredicted RBP eCLIP22.41■■□□□ 1.18
VAMP1-206ENST00000538970 ADAMTS12P58397 1594 aa22.33■■□□□ 1.17
VAMP1-206ENST00000538970 GRIN2AQ12879 1464 aa22.31■■□□□ 1.16
VAMP1-206ENST00000538970 ERCC6L2Q5T890 1561 aa22.25■■□□□ 1.15
VAMP1-206ENST00000538970 NUP160Q12769 1436 aa22.24■■□□□ 1.15
VAMP1-206ENST00000538970 ERICH3Q5RHP9 1530 aa22.24■■□□□ 1.15
VAMP1-206ENST00000538970 CEP170Q5SW79 1584 aa22.24■■□□□ 1.15
VAMP1-206ENST00000538970 FHAD1B1AJZ9 1412 aa22.23■■□□□ 1.15
VAMP1-206ENST00000538970 SHROOM2Q13796 1616 aa22.14■■□□□ 1.14
VAMP1-206ENST00000538970 KIF13AQ9H1H9 1805 aa22.08■■□□□ 1.12
VAMP1-206ENST00000538970 RUSC2Q8N2Y8 1516 aa22.02■■□□□ 1.12
VAMP1-206ENST00000538970 PRG4Q92954 1404 aaPredicted RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms