RNA–Protein interactions for RNA: ENST00000538834.5

CD9-208, Transcript of CD9 molecule, humanhuman

TSL 5

Gene CD9, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-208ENST00000538834 NISCHQ9Y2I1 1504 aa33.8■■■■□ 3
CD9-208ENST00000538834 CCDC180Q9P1Z9 1646 aa30.15■■■□□ 2.42
CD9-208ENST00000538834 ABCC9O60706 1549 aa29.3■■■□□ 2.28
CD9-208ENST00000538834 NACADO15069 1562 aa28.28■■■□□ 2.12
CD9-208ENST00000538834 RB1CC1Q8TDY2 1594 aa28.28■■■□□ 2.12
CD9-208ENST00000538834 MYO15BQ96JP2 1530 aa28.21■■■□□ 2.11
CD9-208ENST00000538834 ZCCHC6Q5VYS8 1495 aaKnown RBP28.15■■■□□ 2.1
CD9-208ENST00000538834 DCAF1Q9Y4B6 1507 aa28.06■■■□□ 2.08
CD9-208ENST00000538834 DCAF8L2P0C7V8 631 aa27.9■■■□□ 2.06
CD9-208ENST00000538834 UNC13AQ9UPW8 1703 aa27.84■■■□□ 2.05
CD9-208ENST00000538834 BICRAQ9NZM4 1560 aa27.55■■■□□ 2
CD9-208ENST00000538834 SCRIBQ14160 1630 aa27.32■■□□□ 1.96
CD9-208ENST00000538834 PABPN1Q86U42 306 aaKnown RBP eCLIP27.32■■□□□ 1.96
CD9-208ENST00000538834 SHROOM4Q9ULL8 1493 aa27.22■■□□□ 1.95
CD9-208ENST00000538834 DNAJC5BQ9UF47 199 aa27.03■■□□□ 1.92
CD9-208ENST00000538834 EIF4G1Q04637 1599 aaKnown RBP26.73■■□□□ 1.87
CD9-208ENST00000538834 CC2D2AQ9P2K1 1620 aa26.63■■□□□ 1.85
CD9-208ENST00000538834 CECR2Q9BXF3 1484 aa26.36■■□□□ 1.81
CD9-208ENST00000538834 SMARCA4P51532 1647 aa26.25■■□□□ 1.79
CD9-208ENST00000538834 BAZ1AQ9NRL2 1556 aaPredicted RBP26.16■■□□□ 1.78
CD9-208ENST00000538834 NCAPD3P42695 1498 aa26.11■■□□□ 1.77
CD9-208ENST00000538834 ATAD2BQ9ULI0 1458 aa26.08■■□□□ 1.77
CD9-208ENST00000538834 PEG3Q9GZU2 1588 aa26.07■■□□□ 1.76
CD9-208ENST00000538834 SMARCA2P51531 1590 aa26.03■■□□□ 1.76
CD9-208ENST00000538834 MROH2BQ7Z745 1585 aa26.03■■□□□ 1.76
CD9-208ENST00000538834 HMGXB3Q12766 1538 aa25.98■■□□□ 1.75
CD9-208ENST00000538834 BAZ1BQ9UIG0 1483 aaKnown RBP25.78■■□□□ 1.72
CD9-208ENST00000538834 WIZO95785 1651 aa25.77■■□□□ 1.72
CD9-208ENST00000538834 RSF1Q96T23 1441 aaPredicted RBP25.71■■□□□ 1.71
CD9-208ENST00000538834 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
CD9-208ENST00000538834 NESP48681 1621 aa25.41■■□□□ 1.66
CD9-208ENST00000538834 LAMC3Q9Y6N6 1575 aa25.41■■□□□ 1.66
CD9-208ENST00000538834 CADPSQ9ULU8 1353 aa25.27■■□□□ 1.64
CD9-208ENST00000538834 KIF21AQ7Z4S6 1674 aa25.2■■□□□ 1.63
CD9-208ENST00000538834 ERCC6Q03468 1493 aa25.18■■□□□ 1.62
CD9-208ENST00000538834 CFTRP13569 1480 aa25.17■■□□□ 1.62
CD9-208ENST00000538834 CCDC88BA6NC98 1476 aa25.15■■□□□ 1.62
CD9-208ENST00000538834 PDS5BQ9NTI5 1447 aa25.14■■□□□ 1.62
CD9-208ENST00000538834 THOC2Q8NI27 1593 aaKnown RBP25.14■■□□□ 1.61
CD9-208ENST00000538834 PRDM2Q13029 1718 aa25.12■■□□□ 1.61
CD9-208ENST00000538834 CUX2O14529 1486 aa25.09■■□□□ 1.61
CD9-208ENST00000538834 FANCD2Q9BXW9 1451 aa24.96■■□□□ 1.59
CD9-208ENST00000538834 MRC2Q9UBG0 1479 aa24.91■■□□□ 1.58
CD9-208ENST00000538834 CEP164Q9UPV0 1460 aa24.91■■□□□ 1.58
CD9-208ENST00000538834 WDR62O43379 1518 aa24.91■■□□□ 1.58
CD9-208ENST00000538834 SUPT5HO00267 1087 aaKnown RBP24.78■■□□□ 1.56
CD9-208ENST00000538834 URB2Q14146 1524 aaKnown RBP24.76■■□□□ 1.55
CD9-208ENST00000538834 TOPBP1Q92547 1522 aa24.6■■□□□ 1.53
CD9-208ENST00000538834 ABCC8Q09428 1581 aa24.59■■□□□ 1.53
CD9-208ENST00000538834 DNMBPQ6XZF7 1577 aa24.58■■□□□ 1.52
CD9-208ENST00000538834 TARBP1Q13395 1621 aaKnown RBP24.43■■□□□ 1.5
CD9-208ENST00000538834 CUX1P39880 1505 aa24.42■■□□□ 1.5
CD9-208ENST00000538834 IFT140Q96RY7 1462 aa24.42■■□□□ 1.5
CD9-208ENST00000538834 POLA1P09884 1462 aaPredicted RBP24.38■■□□□ 1.49
CD9-208ENST00000538834 DNAJC5Q9H3Z4 198 aa24.34■■□□□ 1.49
CD9-208ENST00000538834 ZNF608Q9ULD9 1512 aaPredicted RBP24.32■■□□□ 1.48
CD9-208ENST00000538834 FGD5Q6ZNL6 1462 aa24.28■■□□□ 1.48
CD9-208ENST00000538834 BIVM-ERCC5R4GMW8 1640 aa24.27■■□□□ 1.48
CD9-208ENST00000538834 WDR97A6NE52 1622 aa24.25■■□□□ 1.47
CD9-208ENST00000538834 EIF4G3O43432 1585 aaKnown RBP24.25■■□□□ 1.47
CD9-208ENST00000538834 RAD54L2Q9Y4B4 1467 aa24.23■■□□□ 1.47
CD9-208ENST00000538834 TOP2BQ02880 1626 aa24.23■■□□□ 1.47
CD9-208ENST00000538834 SOGA1O94964 1423 aa24.22■■□□□ 1.47
CD9-208ENST00000538834 SYNJ1O43426 1573 aa24.19■■□□□ 1.46
CD9-208ENST00000538834 WRNQ14191 1432 aaPredicted RBP eCLIP24.17■■□□□ 1.46
CD9-208ENST00000538834 AQRO60306 1485 aaKnown RBP eCLIP24.14■■□□□ 1.46
CD9-208ENST00000538834 ABCA10Q8WWZ4 1543 aa24.11■■□□□ 1.45
CD9-208ENST00000538834 TDRD9Q8NDG6 1382 aaKnown RBP24.06■■□□□ 1.44
CD9-208ENST00000538834 ABCA5Q8WWZ7 1642 aa24.06■■□□□ 1.44
CD9-208ENST00000538834 PBRM1Q86U86 1689 aa24.02■■□□□ 1.44
CD9-208ENST00000538834 CHD1O14646 1710 aa24.01■■□□□ 1.43
CD9-208ENST00000538834 GRIN2BQ13224 1484 aa23.96■■□□□ 1.43
CD9-208ENST00000538834 GAPVD1Q14C86 1478 aa23.96■■□□□ 1.43
CD9-208ENST00000538834 OSCARQ8IYS5 282 aa23.95■■□□□ 1.42
CD9-208ENST00000538834 MAGI1Q96QZ7 1491 aaPredicted RBP23.94■■□□□ 1.42
CD9-208ENST00000538834 SNAPC4Q5SXM2 1469 aa23.91■■□□□ 1.42
CD9-208ENST00000538834 SYNJ2O15056 1496 aa23.83■■□□□ 1.41
CD9-208ENST00000538834 ERICH3Q5RHP9 1530 aa23.82■■□□□ 1.4
CD9-208ENST00000538834 ADAMTS12P58397 1594 aa23.78■■□□□ 1.4
CD9-208ENST00000538834 CLASP1Q7Z460 1538 aa23.75■■□□□ 1.39
CD9-208ENST00000538834 FHAD1B1AJZ9 1412 aa23.69■■□□□ 1.38
CD9-208ENST00000538834 RIMBP3CA6NJZ7 1639 aa23.69■■□□□ 1.38
CD9-208ENST00000538834 RIMBP3BA6NNM3 1639 aa23.69■■□□□ 1.38
CD9-208ENST00000538834 RIMBP3Q9UFD9 1639 aa23.69■■□□□ 1.38
CD9-208ENST00000538834 CHMP7Q8WUX9 453 aaPredicted RBP23.68■■□□□ 1.38
CD9-208ENST00000538834 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
CD9-208ENST00000538834 FBLN2P98095 1184 aa23.67■■□□□ 1.38
CD9-208ENST00000538834 KIF27Q86VH2 1401 aa23.65■■□□□ 1.38
CD9-208ENST00000538834 IGF1RP08069 1367 aa23.64■■□□□ 1.37
CD9-208ENST00000538834 ARHGEF11O15085 1522 aa23.64■■□□□ 1.37
CD9-208ENST00000538834 NUP160Q12769 1436 aa23.63■■□□□ 1.37
CD9-208ENST00000538834 CUL7Q14999 1698 aa23.6■■□□□ 1.37
CD9-208ENST00000538834 CEP170Q5SW79 1584 aa23.6■■□□□ 1.37
CD9-208ENST00000538834 SHROOM2Q13796 1616 aa23.53■■□□□ 1.36
CD9-208ENST00000538834 RUSC2Q8N2Y8 1516 aa23.49■■□□□ 1.35
CD9-208ENST00000538834 ARAP1Q96P48 1450 aa23.46■■□□□ 1.35
CD9-208ENST00000538834 TRIM41Q8WV44 630 aa23.44■■□□□ 1.34
CD9-208ENST00000538834 CARMIL1Q5VZK9 1371 aa23.43■■□□□ 1.34
CD9-208ENST00000538834 ERCC6L2Q5T890 1561 aa23.37■■□□□ 1.33
CD9-208ENST00000538834 KIAA0586Q9BVV6 1533 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms