RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 NISCHQ9Y2I1 1504 aa35.54■■■■□ 3.28
SMARCA4-206ENST00000538456 ABCC9O60706 1549 aa32.34■■■□□ 2.77
SMARCA4-206ENST00000538456 CCDC180Q9P1Z9 1646 aa32.04■■■□□ 2.72
SMARCA4-206ENST00000538456 RB1CC1Q8TDY2 1594 aa30.62■■■□□ 2.49
SMARCA4-206ENST00000538456 DNAJC5BQ9UF47 199 aa30.53■■■□□ 2.48
SMARCA4-206ENST00000538456 NACADO15069 1562 aa30.32■■■□□ 2.45
SMARCA4-206ENST00000538456 DCAF8L2P0C7V8 631 aa30.17■■■□□ 2.42
SMARCA4-206ENST00000538456 PABPN1Q86U42 306 aaKnown RBP eCLIP30.05■■■□□ 2.4
SMARCA4-206ENST00000538456 UNC13AQ9UPW8 1703 aa30.02■■■□□ 2.4
SMARCA4-206ENST00000538456 MYO15BQ96JP2 1530 aa29.76■■■□□ 2.36
SMARCA4-206ENST00000538456 BICRAQ9NZM4 1560 aa29.76■■■□□ 2.35
SMARCA4-206ENST00000538456 ZCCHC6Q5VYS8 1495 aaKnown RBP29.41■■■□□ 2.3
SMARCA4-206ENST00000538456 DCAF1Q9Y4B6 1507 aa29.3■■■□□ 2.28
SMARCA4-206ENST00000538456 SHROOM4Q9ULL8 1493 aa29.26■■■□□ 2.27
SMARCA4-206ENST00000538456 SCRIBQ14160 1630 aa29.24■■■□□ 2.27
SMARCA4-206ENST00000538456 CC2D2AQ9P2K1 1620 aa29.2■■■□□ 2.26
SMARCA4-206ENST00000538456 CECR2Q9BXF3 1484 aa29.13■■■□□ 2.25
SMARCA4-206ENST00000538456 EIF4G1Q04637 1599 aaKnown RBP29.05■■■□□ 2.24
SMARCA4-206ENST00000538456 DNAJC5Q9H3Z4 198 aa28.2■■■□□ 2.1
SMARCA4-206ENST00000538456 NCAPD3P42695 1498 aa27.97■■■□□ 2.07
SMARCA4-206ENST00000538456 ERCC6Q03468 1493 aa27.95■■■□□ 2.06
SMARCA4-206ENST00000538456 CUX2O14529 1486 aa27.93■■■□□ 2.06
SMARCA4-206ENST00000538456 ATAD2BQ9ULI0 1458 aa27.88■■■□□ 2.05
SMARCA4-206ENST00000538456 SMARCA4P51532 1647 aa27.82■■■□□ 2.04
SMARCA4-206ENST00000538456 SMARCA2P51531 1590 aa27.8■■■□□ 2.04
SMARCA4-206ENST00000538456 HMGXB3Q12766 1538 aa27.77■■■□□ 2.04
SMARCA4-206ENST00000538456 NESP48681 1621 aa27.71■■■□□ 2.03
SMARCA4-206ENST00000538456 BAZ1BQ9UIG0 1483 aaKnown RBP27.63■■■□□ 2.01
SMARCA4-206ENST00000538456 BAZ1AQ9NRL2 1556 aaPredicted RBP27.62■■■□□ 2.01
SMARCA4-206ENST00000538456 PEG3Q9GZU2 1588 aa27.51■■□□□ 1.99
SMARCA4-206ENST00000538456 THOC2Q8NI27 1593 aaKnown RBP27.48■■□□□ 1.99
SMARCA4-206ENST00000538456 LAMC3Q9Y6N6 1575 aa27.43■■□□□ 1.98
SMARCA4-206ENST00000538456 MROH2BQ7Z745 1585 aa27.41■■□□□ 1.98
SMARCA4-206ENST00000538456 KIF21AQ7Z4S6 1674 aa27.37■■□□□ 1.97
SMARCA4-206ENST00000538456 PDS5BQ9NTI5 1447 aa27.25■■□□□ 1.95
SMARCA4-206ENST00000538456 CADPSQ9ULU8 1353 aa27.11■■□□□ 1.93
SMARCA4-206ENST00000538456 WIZO95785 1651 aa27.11■■□□□ 1.93
SMARCA4-206ENST00000538456 MRC2Q9UBG0 1479 aa27.07■■□□□ 1.92
SMARCA4-206ENST00000538456 WDR62O43379 1518 aa27.01■■□□□ 1.91
SMARCA4-206ENST00000538456 TRIM41Q8WV44 630 aa26.94■■□□□ 1.9
SMARCA4-206ENST00000538456 CEP164Q9UPV0 1460 aa26.92■■□□□ 1.9
SMARCA4-206ENST00000538456 FANCD2Q9BXW9 1451 aa26.86■■□□□ 1.89
SMARCA4-206ENST00000538456 CFTRP13569 1480 aa26.76■■□□□ 1.87
SMARCA4-206ENST00000538456 RSF1Q96T23 1441 aaPredicted RBP26.72■■□□□ 1.87
SMARCA4-206ENST00000538456 TOP2AP11388 1531 aaKnown RBP26.7■■□□□ 1.87
SMARCA4-206ENST00000538456 URB2Q14146 1524 aaKnown RBP26.66■■□□□ 1.86
SMARCA4-206ENST00000538456 OSCARQ8IYS5 282 aa26.59■■□□□ 1.85
SMARCA4-206ENST00000538456 PRDM2Q13029 1718 aa26.56■■□□□ 1.84
SMARCA4-206ENST00000538456 CCDC88BA6NC98 1476 aa26.39■■□□□ 1.82
SMARCA4-206ENST00000538456 ZNF608Q9ULD9 1512 aaPredicted RBP26.39■■□□□ 1.81
SMARCA4-206ENST00000538456 IFT140Q96RY7 1462 aa26.36■■□□□ 1.81
SMARCA4-206ENST00000538456 RIMBP3CA6NJZ7 1639 aa26.36■■□□□ 1.81
SMARCA4-206ENST00000538456 RIMBP3BA6NNM3 1639 aa26.36■■□□□ 1.81
SMARCA4-206ENST00000538456 RIMBP3Q9UFD9 1639 aa26.36■■□□□ 1.81
SMARCA4-206ENST00000538456 TOPBP1Q92547 1522 aa26.32■■□□□ 1.8
SMARCA4-206ENST00000538456 EIF4G3O43432 1585 aaKnown RBP26.25■■□□□ 1.79
SMARCA4-206ENST00000538456 ARHGEF11O15085 1522 aa26.22■■□□□ 1.79
SMARCA4-206ENST00000538456 DNMBPQ6XZF7 1577 aa26.2■■□□□ 1.79
SMARCA4-206ENST00000538456 ABCC8Q09428 1581 aa26.19■■□□□ 1.78
SMARCA4-206ENST00000538456 CHD1O14646 1710 aa26.14■■□□□ 1.78
SMARCA4-206ENST00000538456 TARBP1Q13395 1621 aaKnown RBP26.11■■□□□ 1.77
SMARCA4-206ENST00000538456 AQRO60306 1485 aaKnown RBP eCLIP26.1■■□□□ 1.775e-11■■■□□ 17.9
SMARCA4-206ENST00000538456 CYB5RLQ6IPT4 315 aa26.03■■□□□ 1.76
SMARCA4-206ENST00000538456 POLA1P09884 1462 aaPredicted RBP26.03■■□□□ 1.76
SMARCA4-206ENST00000538456 FBLN2P98095 1184 aa26.01■■□□□ 1.75
SMARCA4-206ENST00000538456 RAD54L2Q9Y4B4 1467 aa25.96■■□□□ 1.75
SMARCA4-206ENST00000538456 ARAP1Q96P48 1450 aa25.95■■□□□ 1.74
SMARCA4-206ENST00000538456 TDRD9Q8NDG6 1382 aaKnown RBP25.9■■□□□ 1.74
SMARCA4-206ENST00000538456 SOGA1O94964 1423 aa25.88■■□□□ 1.73
SMARCA4-206ENST00000538456 TRHP20396 242 aaPredicted RBP25.85■■□□□ 1.73
SMARCA4-206ENST00000538456 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
SMARCA4-206ENST00000538456 FGD5Q6ZNL6 1462 aa25.85■■□□□ 1.73
SMARCA4-206ENST00000538456 WDR97A6NE52 1622 aa25.79■■□□□ 1.72
SMARCA4-206ENST00000538456 CUX1P39880 1505 aa25.78■■□□□ 1.72
SMARCA4-206ENST00000538456 CLASP1Q7Z460 1538 aa25.77■■□□□ 1.72
SMARCA4-206ENST00000538456 SYNJ1O43426 1573 aa25.73■■□□□ 1.71
SMARCA4-206ENST00000538456 CHMP7Q8WUX9 453 aaPredicted RBP25.73■■□□□ 1.71
SMARCA4-206ENST00000538456 MAGI1Q96QZ7 1491 aaPredicted RBP25.72■■□□□ 1.71
SMARCA4-206ENST00000538456 GRIN2BQ13224 1484 aa25.7■■□□□ 1.7
SMARCA4-206ENST00000538456 PBRM1Q86U86 1689 aa25.66■■□□□ 1.7
SMARCA4-206ENST00000538456 SYNJ2O15056 1496 aa25.66■■□□□ 1.7
SMARCA4-206ENST00000538456 GAPVD1Q14C86 1478 aa25.58■■□□□ 1.69
SMARCA4-206ENST00000538456 ABCA5Q8WWZ7 1642 aa25.53■■□□□ 1.68
SMARCA4-206ENST00000538456 ABCA10Q8WWZ4 1543 aa25.5■■□□□ 1.67
SMARCA4-206ENST00000538456 ERCC6L2Q5T890 1561 aa25.39■■□□□ 1.65
SMARCA4-206ENST00000538456 SUPT5HO00267 1087 aaKnown RBP25.38■■□□□ 1.65
SMARCA4-206ENST00000538456 GRIN2AQ12879 1464 aa25.38■■□□□ 1.65
SMARCA4-206ENST00000538456 ADAMTS12P58397 1594 aa25.37■■□□□ 1.65
SMARCA4-206ENST00000538456 WRNQ14191 1432 aaPredicted RBP eCLIP25.35■■□□□ 1.65
SMARCA4-206ENST00000538456 CEP170Q5SW79 1584 aa25.34■■□□□ 1.65
SMARCA4-206ENST00000538456 BIVM-ERCC5R4GMW8 1640 aa25.3■■□□□ 1.64
SMARCA4-206ENST00000538456 AEBP2Q6ZN18 517 aaPredicted RBP25.29■■□□□ 1.64
SMARCA4-206ENST00000538456 TOP2BQ02880 1626 aa25.28■■□□□ 1.64
SMARCA4-206ENST00000538456 NUP160Q12769 1436 aa25.28■■□□□ 1.64
SMARCA4-206ENST00000538456 SHROOM2Q13796 1616 aa25.23■■□□□ 1.63
SMARCA4-206ENST00000538456 FHAD1B1AJZ9 1412 aa25.22■■□□□ 1.63
SMARCA4-206ENST00000538456 ERICH3Q5RHP9 1530 aa25.17■■□□□ 1.62
SMARCA4-206ENST00000538456 KIF13AQ9H1H9 1805 aa25.09■■□□□ 1.61
SMARCA4-206ENST00000538456 PRG4Q92954 1404 aaPredicted RBP25.09■■□□□ 1.61
SMARCA4-206ENST00000538456 RUSC2Q8N2Y8 1516 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms