RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 NISCHQ9Y2I1 1504 aa14.43□□□□□ -0.1
USP28-206ENST00000538224 CCDC180Q9P1Z9 1646 aa12.62□□□□□ -0.39
USP28-206ENST00000538224 ZCCHC6Q5VYS8 1495 aaKnown RBP12.21□□□□□ -0.46
USP28-206ENST00000538224 DCAF1Q9Y4B6 1507 aa12.02□□□□□ -0.48
USP28-206ENST00000538224 SHROOM4Q9ULL8 1493 aa11.81□□□□□ -0.52
USP28-206ENST00000538224 MYO15BQ96JP2 1530 aa11.79□□□□□ -0.52
USP28-206ENST00000538224 DCAF8L2P0C7V8 631 aa11.64□□□□□ -0.55
USP28-206ENST00000538224 NACADO15069 1562 aa11.62□□□□□ -0.55
USP28-206ENST00000538224 ABCC9O60706 1549 aa11.53□□□□□ -0.56
USP28-206ENST00000538224 SCRIBQ14160 1630 aa11.5□□□□□ -0.57
USP28-206ENST00000538224 SUPT5HO00267 1087 aaKnown RBP11.48□□□□□ -0.57
USP28-206ENST00000538224 RB1CC1Q8TDY2 1594 aa11.45□□□□□ -0.58
USP28-206ENST00000538224 UNC13AQ9UPW8 1703 aa11.26□□□□□ -0.61
USP28-206ENST00000538224 RSF1Q96T23 1441 aaPredicted RBP11.24□□□□□ -0.61
USP28-206ENST00000538224 BAZ1AQ9NRL2 1556 aaPredicted RBP11.18□□□□□ -0.62
USP28-206ENST00000538224 CHIC1Q5VXU3 224 aa11.15□□□□□ -0.62
USP28-206ENST00000538224 MROH2BQ7Z745 1585 aa11.11□□□□□ -0.63
USP28-206ENST00000538224 CECR2Q9BXF3 1484 aa11.09□□□□□ -0.63
USP28-206ENST00000538224 SMARCA4P51532 1647 aa11.09□□□□□ -0.63
USP28-206ENST00000538224 WIZO95785 1651 aa11.08□□□□□ -0.64
USP28-206ENST00000538224 BICRAQ9NZM4 1560 aa11.03□□□□□ -0.64
USP28-206ENST00000538224 TOP2AP11388 1531 aaKnown RBP11.03□□□□□ -0.64
USP28-206ENST00000538224 PEG3Q9GZU2 1588 aa10.96□□□□□ -0.65
USP28-206ENST00000538224 EIF4G1Q04637 1599 aaKnown RBP10.95□□□□□ -0.66
USP28-206ENST00000538224 SMARCA2P51531 1590 aa10.9□□□□□ -0.66
USP28-206ENST00000538224 TRIM41Q8WV44 630 aa10.84□□□□□ -0.67
USP28-206ENST00000538224 CCDC88BA6NC98 1476 aa10.82□□□□□ -0.68
USP28-206ENST00000538224 BAZ1BQ9UIG0 1483 aaKnown RBP10.76□□□□□ -0.69
USP28-206ENST00000538224 ATAD2BQ9ULI0 1458 aa10.76□□□□□ -0.69
USP28-206ENST00000538224 PABPN1Q86U42 306 aaKnown RBP eCLIP10.76□□□□□ -0.69
USP28-206ENST00000538224 HMGXB3Q12766 1538 aa10.74□□□□□ -0.69
USP28-206ENST00000538224 ABCC8Q09428 1581 aa10.69□□□□□ -0.7
USP28-206ENST00000538224 EEA1Q15075 1411 aa10.68□□□□□ -0.7
USP28-206ENST00000538224 LOC105371045A0A1W2PR82 267 aa10.66□□□□□ -0.7
USP28-206ENST00000538224 PRDM2Q13029 1718 aa10.65□□□□□ -0.7
USP28-206ENST00000538224 NCAPD3P42695 1498 aa10.64□□□□□ -0.71
USP28-206ENST00000538224 WRNQ14191 1432 aaPredicted RBP eCLIP10.61□□□□□ -0.71
USP28-206ENST00000538224 BIVM-ERCC5R4GMW8 1640 aa10.59□□□□□ -0.71
USP28-206ENST00000538224 SYNJ1O43426 1573 aa10.57□□□□□ -0.72
USP28-206ENST00000538224 TOP2BQ02880 1626 aa10.56□□□□□ -0.72
USP28-206ENST00000538224 FAM9AQ8IZU1 332 aaPredicted RBP10.56□□□□□ -0.72
USP28-206ENST00000538224 KIF21BO75037 1637 aa10.55□□□□□ -0.72
USP28-206ENST00000538224 TRIM26Q12899 539 aaPredicted RBP10.53□□□□□ -0.72
USP28-206ENST00000538224 GOLGA3Q08378 1498 aa10.51□□□□□ -0.73
USP28-206ENST00000538224 PCGF6Q9BYE7 350 aa10.51□□□□□ -0.73
USP28-206ENST00000538224 HRCP23327 699 aa10.49□□□□□ -0.73
USP28-206ENST00000538224 SOGA1O94964 1423 aa10.49□□□□□ -0.73
USP28-206ENST00000538224 CEP164Q9UPV0 1460 aa10.49□□□□□ -0.73
USP28-206ENST00000538224 TNIKQ9UKE5 1360 aa10.48□□□□□ -0.73
USP28-206ENST00000538224 CFTRP13569 1480 aa10.48□□□□□ -0.73
USP28-206ENST00000538224 CC2D2AQ9P2K1 1620 aa10.46□□□□□ -0.74
USP28-206ENST00000538224 CSRNP3Q8WYN3 585 aa10.45□□□□□ -0.74
USP28-206ENST00000538224 CEP162Q5TB80 1403 aa10.44□□□□□ -0.74
USP28-206ENST00000538224 ERICH3Q5RHP9 1530 aa10.42□□□□□ -0.74
USP28-206ENST00000538224 RUSC2Q8N2Y8 1516 aa10.41□□□□□ -0.74
USP28-206ENST00000538224 CUX1P39880 1505 aa10.4□□□□□ -0.74
USP28-206ENST00000538224 CADPSQ9ULU8 1353 aa10.36□□□□□ -0.75
USP28-206ENST00000538224 EHMT2Q96KQ7 1210 aa10.35□□□□□ -0.75
USP28-206ENST00000538224 KIF27Q86VH2 1401 aa10.34□□□□□ -0.75
USP28-206ENST00000538224 UBTFP17480 764 aaKnown RBP10.33□□□□□ -0.76
USP28-206ENST00000538224 ZEB1P37275 1124 aaPredicted RBP10.33□□□□□ -0.76
USP28-206ENST00000538224 LAMC3Q9Y6N6 1575 aa10.32□□□□□ -0.76
USP28-206ENST00000538224 PRXQ9BXM0 1461 aa10.31□□□□□ -0.76
USP28-206ENST00000538224 RAPGEF2Q9Y4G8 1499 aa10.3□□□□□ -0.76
USP28-206ENST00000538224 CLIP1P30622 1438 aa10.3□□□□□ -0.76
USP28-206ENST00000538224 DNMBPQ6XZF7 1577 aa10.3□□□□□ -0.76
USP28-206ENST00000538224 VPS8Q8N3P4 1428 aa10.27□□□□□ -0.77
USP28-206ENST00000538224 FANCD2Q9BXW9 1451 aa10.27□□□□□ -0.77
USP28-206ENST00000538224 FGD5Q6ZNL6 1462 aa10.25□□□□□ -0.77
USP28-206ENST00000538224 CUL7Q14999 1698 aa10.23□□□□□ -0.77
USP28-206ENST00000538224 AEBP2Q6ZN18 517 aaPredicted RBP10.23□□□□□ -0.77
USP28-206ENST00000538224 WDR97A6NE52 1622 aa10.22□□□□□ -0.77
USP28-206ENST00000538224 CUX2O14529 1486 aa10.22□□□□□ -0.77
USP28-206ENST00000538224 TOPBP1Q92547 1522 aa10.2□□□□□ -0.78
USP28-206ENST00000538224 ABCA10Q8WWZ4 1543 aa10.19□□□□□ -0.78
USP28-206ENST00000538224 CTTNBP2Q8WZ74 1663 aa10.18□□□□□ -0.78
USP28-206ENST00000538224 ARAP1Q96P48 1450 aa10.17□□□□□ -0.78
USP28-206ENST00000538224 PDS5BQ9NTI5 1447 aa10.16□□□□□ -0.78
USP28-206ENST00000538224 KIF21AQ7Z4S6 1674 aa10.16□□□□□ -0.78
USP28-206ENST00000538224 APLP2Q06481 763 aa10.16□□□□□ -0.78
USP28-206ENST00000538224 POLA1P09884 1462 aaPredicted RBP10.16□□□□□ -0.78
USP28-206ENST00000538224 NESP48681 1621 aa10.14□□□□□ -0.79
USP28-206ENST00000538224 ABCA5Q8WWZ7 1642 aa10.14□□□□□ -0.79
USP28-206ENST00000538224 IGF1RP08069 1367 aa10.13□□□□□ -0.79
USP28-206ENST00000538224 EFCAB5A4FU69 1503 aa10.12□□□□□ -0.79
USP28-206ENST00000538224 CARMIL1Q5VZK9 1371 aa10.12□□□□□ -0.79
USP28-206ENST00000538224 MAP3K1Q13233 1512 aa10.12□□□□□ -0.79
USP28-206ENST00000538224 PPARGC1BQ86YN6 1023 aaKnown RBP10.11□□□□□ -0.79
USP28-206ENST00000538224 URB2Q14146 1524 aaKnown RBP10.11□□□□□ -0.79
USP28-206ENST00000538224 ARHGAP35Q9NRY4 1499 aa10.1□□□□□ -0.79
USP28-206ENST00000538224 CFAP43Q8NDM7 1665 aa10.09□□□□□ -0.79
USP28-206ENST00000538224 FHAD1B1AJZ9 1412 aa10.07□□□□□ -0.8
USP28-206ENST00000538224 PBRM1Q86U86 1689 aa10.07□□□□□ -0.8
USP28-206ENST00000538224 TIAM1Q13009 1591 aa10.06□□□□□ -0.8
USP28-206ENST00000538224 RAD54L2Q9Y4B4 1467 aa10.06□□□□□ -0.8
USP28-206ENST00000538224 TARBP1Q13395 1621 aaKnown RBP10.06□□□□□ -0.8
USP28-206ENST00000538224 CCER1Q8TC90 406 aaPredicted RBP10.05□□□□□ -0.8
USP28-206ENST00000538224 MRC2Q9UBG0 1479 aa10.04□□□□□ -0.8
USP28-206ENST00000538224 AQRO60306 1485 aaKnown RBP eCLIP10.03□□□□□ -0.88e-7■■■□□ 16.1
USP28-206ENST00000538224 GAPVD1Q14C86 1478 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms