RNA–Protein interactions for RNA: ENST00000537849.1

SPARC-207, Transcript of secreted protein acidic and cysteine rich, humanhuman

TSL 3

Gene SPARC, Length 218 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARC-207ENST00000537849 NISCHQ9Y2I1 1504 aa27.17■■□□□ 1.94
SPARC-207ENST00000537849 CCDC180Q9P1Z9 1646 aa23.77■■□□□ 1.4
SPARC-207ENST00000537849 ZCCHC6Q5VYS8 1495 aaKnown RBP22.73■■□□□ 1.23
SPARC-207ENST00000537849 ABCC9O60706 1549 aa22.7■■□□□ 1.22
SPARC-207ENST00000537849 DCAF8L2P0C7V8 631 aa22.5■■□□□ 1.19
SPARC-207ENST00000537849 DCAF1Q9Y4B6 1507 aa22.47■■□□□ 1.19
SPARC-207ENST00000537849 MYO15BQ96JP2 1530 aa22.31■■□□□ 1.16
SPARC-207ENST00000537849 NACADO15069 1562 aa22.23■■□□□ 1.15
SPARC-207ENST00000537849 RB1CC1Q8TDY2 1594 aa22.07■■□□□ 1.12
SPARC-207ENST00000537849 SHROOM4Q9ULL8 1493 aa21.92■■□□□ 1.1
SPARC-207ENST00000537849 SCRIBQ14160 1630 aa21.79■■□□□ 1.08
SPARC-207ENST00000537849 UNC13AQ9UPW8 1703 aa21.66■■□□□ 1.06
SPARC-207ENST00000537849 BICRAQ9NZM4 1560 aa21.46■■□□□ 1.03
SPARC-207ENST00000537849 PABPN1Q86U42 306 aaKnown RBP eCLIP21.4■■□□□ 1.02
SPARC-207ENST00000537849 CECR2Q9BXF3 1484 aa21.14■□□□□ 0.98
SPARC-207ENST00000537849 SUPT5HO00267 1087 aaKnown RBP21.01■□□□□ 0.95
SPARC-207ENST00000537849 RSF1Q96T23 1441 aaPredicted RBP20.99■□□□□ 0.95
SPARC-207ENST00000537849 MROH2BQ7Z745 1585 aa20.97■□□□□ 0.95
SPARC-207ENST00000537849 BAZ1AQ9NRL2 1556 aaPredicted RBP20.96■□□□□ 0.95
SPARC-207ENST00000537849 SMARCA4P51532 1647 aa20.91■□□□□ 0.94
SPARC-207ENST00000537849 WIZO95785 1651 aa20.78■□□□□ 0.92
SPARC-207ENST00000537849 EIF4G1Q04637 1599 aaKnown RBP20.78■□□□□ 0.92
SPARC-207ENST00000537849 PEG3Q9GZU2 1588 aa20.69■□□□□ 0.9
SPARC-207ENST00000537849 ATAD2BQ9ULI0 1458 aa20.66■□□□□ 0.9
SPARC-207ENST00000537849 SMARCA2P51531 1590 aa20.61■□□□□ 0.89
SPARC-207ENST00000537849 CC2D2AQ9P2K1 1620 aa20.55■□□□□ 0.88
SPARC-207ENST00000537849 NCAPD3P42695 1498 aa20.55■□□□□ 0.88
SPARC-207ENST00000537849 TOP2AP11388 1531 aaKnown RBP20.53■□□□□ 0.88
SPARC-207ENST00000537849 BAZ1BQ9UIG0 1483 aaKnown RBP20.48■□□□□ 0.87
SPARC-207ENST00000537849 HMGXB3Q12766 1538 aa20.44■□□□□ 0.86
SPARC-207ENST00000537849 CCDC88BA6NC98 1476 aa20.37■□□□□ 0.85
SPARC-207ENST00000537849 DNAJC5BQ9UF47 199 aa20.37■□□□□ 0.85
SPARC-207ENST00000537849 CHIC1Q5VXU3 224 aa20.05■□□□□ 0.8
SPARC-207ENST00000537849 CFTRP13569 1480 aa20■□□□□ 0.79
SPARC-207ENST00000537849 CADPSQ9ULU8 1353 aa19.99■□□□□ 0.79
SPARC-207ENST00000537849 NESP48681 1621 aa19.87■□□□□ 0.77
SPARC-207ENST00000537849 PRDM2Q13029 1718 aa19.85■□□□□ 0.77
SPARC-207ENST00000537849 LAMC3Q9Y6N6 1575 aa19.84■□□□□ 0.77
SPARC-207ENST00000537849 ABCC8Q09428 1581 aa19.8■□□□□ 0.76
SPARC-207ENST00000537849 TRIM41Q8WV44 630 aa19.79■□□□□ 0.76
SPARC-207ENST00000537849 FANCD2Q9BXW9 1451 aa19.73■□□□□ 0.75
SPARC-207ENST00000537849 WRNQ14191 1432 aaPredicted RBP eCLIP19.72■□□□□ 0.75
SPARC-207ENST00000537849 PDS5BQ9NTI5 1447 aa19.71■□□□□ 0.75
SPARC-207ENST00000537849 SYNJ1O43426 1573 aa19.65■□□□□ 0.74
SPARC-207ENST00000537849 CUX1P39880 1505 aa19.62■□□□□ 0.73
SPARC-207ENST00000537849 KIF21AQ7Z4S6 1674 aa19.61■□□□□ 0.73
SPARC-207ENST00000537849 CEP164Q9UPV0 1460 aa19.6■□□□□ 0.73
SPARC-207ENST00000537849 TOP2BQ02880 1626 aa19.6■□□□□ 0.73
SPARC-207ENST00000537849 BIVM-ERCC5R4GMW8 1640 aa19.58■□□□□ 0.73
SPARC-207ENST00000537849 URB2Q14146 1524 aaKnown RBP19.51■□□□□ 0.71
SPARC-207ENST00000537849 TOPBP1Q92547 1522 aa19.51■□□□□ 0.71
SPARC-207ENST00000537849 DNMBPQ6XZF7 1577 aa19.5■□□□□ 0.71
SPARC-207ENST00000537849 ERCC6Q03468 1493 aa19.45■□□□□ 0.7
SPARC-207ENST00000537849 MRC2Q9UBG0 1479 aa19.45■□□□□ 0.7
SPARC-207ENST00000537849 SOGA1O94964 1423 aa19.42■□□□□ 0.7
SPARC-207ENST00000537849 FGD5Q6ZNL6 1462 aa19.42■□□□□ 0.7
SPARC-207ENST00000537849 FAM9AQ8IZU1 332 aaPredicted RBP19.39■□□□□ 0.69
SPARC-207ENST00000537849 RUSC2Q8N2Y8 1516 aa19.39■□□□□ 0.69
SPARC-207ENST00000537849 POLA1P09884 1462 aaPredicted RBP19.38■□□□□ 0.69
SPARC-207ENST00000537849 WDR62O43379 1518 aa19.35■□□□□ 0.69
SPARC-207ENST00000537849 THOC2Q8NI27 1593 aaKnown RBP19.35■□□□□ 0.69
SPARC-207ENST00000537849 RAD54L2Q9Y4B4 1467 aa19.33■□□□□ 0.68
SPARC-207ENST00000537849 EEA1Q15075 1411 aa19.31■□□□□ 0.68
SPARC-207ENST00000537849 CSRNP3Q8WYN3 585 aa19.3■□□□□ 0.68
SPARC-207ENST00000537849 CUX2O14529 1486 aa19.28■□□□□ 0.68
SPARC-207ENST00000537849 ABCA10Q8WWZ4 1543 aa19.27■□□□□ 0.68
SPARC-207ENST00000537849 LOC105371045A0A1W2PR82 267 aa19.27■□□□□ 0.68
SPARC-207ENST00000537849 TARBP1Q13395 1621 aaKnown RBP19.25■□□□□ 0.67
SPARC-207ENST00000537849 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
SPARC-207ENST00000537849 WDR97A6NE52 1622 aa19.21■□□□□ 0.67
SPARC-207ENST00000537849 IGF1RP08069 1367 aa19.19■□□□□ 0.66
SPARC-207ENST00000537849 IFT140Q96RY7 1462 aa19.18■□□□□ 0.66
SPARC-207ENST00000537849 TDRD9Q8NDG6 1382 aaKnown RBP19.17■□□□□ 0.66
SPARC-207ENST00000537849 ABCA5Q8WWZ7 1642 aa19.11■□□□□ 0.65
SPARC-207ENST00000537849 GAPVD1Q14C86 1478 aa19.1■□□□□ 0.65
SPARC-207ENST00000537849 ZNF608Q9ULD9 1512 aaPredicted RBP19.1■□□□□ 0.65
SPARC-207ENST00000537849 AQRO60306 1485 aaKnown RBP eCLIP19.09■□□□□ 0.65
SPARC-207ENST00000537849 EHMT2Q96KQ7 1210 aa19.09■□□□□ 0.65
SPARC-207ENST00000537849 PRXQ9BXM0 1461 aa19.09■□□□□ 0.65
SPARC-207ENST00000537849 KIF21BO75037 1637 aa19.06■□□□□ 0.64
SPARC-207ENST00000537849 CARMIL1Q5VZK9 1371 aa19.05■□□□□ 0.64
SPARC-207ENST00000537849 ERICH3Q5RHP9 1530 aa19.03■□□□□ 0.64
SPARC-207ENST00000537849 RAPGEF2Q9Y4G8 1499 aa19.02■□□□□ 0.63
SPARC-207ENST00000537849 GOLGA3Q08378 1498 aa19.01■□□□□ 0.63
SPARC-207ENST00000537849 GRIN2BQ13224 1484 aa18.99■□□□□ 0.63
SPARC-207ENST00000537849 PBRM1Q86U86 1689 aa18.98■□□□□ 0.63
SPARC-207ENST00000537849 UBTFP17480 764 aaKnown RBP18.98■□□□□ 0.63
SPARC-207ENST00000537849 EIF4G3O43432 1585 aaKnown RBP18.97■□□□□ 0.63
SPARC-207ENST00000537849 TNIKQ9UKE5 1360 aa18.96■□□□□ 0.63
SPARC-207ENST00000537849 CUL7Q14999 1698 aa18.95■□□□□ 0.62
SPARC-207ENST00000537849 FHAD1B1AJZ9 1412 aa18.9■□□□□ 0.62
SPARC-207ENST00000537849 SNAPC4Q5SXM2 1469 aa18.87■□□□□ 0.61
SPARC-207ENST00000537849 ADAMTS12P58397 1594 aa18.85■□□□□ 0.61
SPARC-207ENST00000537849 MAGI1Q96QZ7 1491 aaPredicted RBP18.84■□□□□ 0.61
SPARC-207ENST00000537849 CEP162Q5TB80 1403 aa18.78■□□□□ 0.6
SPARC-207ENST00000537849 SYNJ2O15056 1496 aa18.77■□□□□ 0.6
SPARC-207ENST00000537849 CHMP7Q8WUX9 453 aaPredicted RBP18.77■□□□□ 0.6
SPARC-207ENST00000537849 GRIN2AQ12879 1464 aa18.74■□□□□ 0.59
SPARC-207ENST00000537849 FBLN2P98095 1184 aa18.72■□□□□ 0.59
SPARC-207ENST00000537849 CTTNBP2Q8WZ74 1663 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms