RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 NISCHQ9Y2I1 1504 aa23.72■■□□□ 1.39
USP28-205ENST00000537706 ABCC9O60706 1549 aa22.44■■□□□ 1.18
USP28-205ENST00000537706 DNAJC5BQ9UF47 199 aa21.67■■□□□ 1.06
USP28-205ENST00000537706 CCDC180Q9P1Z9 1646 aa21.62■■□□□ 1.05
USP28-205ENST00000537706 RB1CC1Q8TDY2 1594 aa21.05■□□□□ 0.96
USP28-205ENST00000537706 PABPN1Q86U42 306 aaKnown RBP eCLIP20.78■□□□□ 0.92
USP28-205ENST00000537706 NACADO15069 1562 aa20.7■□□□□ 0.9
USP28-205ENST00000537706 DNAJC5Q9H3Z4 198 aa20.63■□□□□ 0.89
USP28-205ENST00000537706 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
USP28-205ENST00000537706 CECR2Q9BXF3 1484 aa20.33■□□□□ 0.85
USP28-205ENST00000537706 UNC13AQ9UPW8 1703 aa20.33■□□□□ 0.84
USP28-205ENST00000537706 BICRAQ9NZM4 1560 aa20.31■□□□□ 0.84
USP28-205ENST00000537706 CC2D2AQ9P2K1 1620 aa20.18■□□□□ 0.82
USP28-205ENST00000537706 SHROOM4Q9ULL8 1493 aa20.15■□□□□ 0.82
USP28-205ENST00000537706 MYO15BQ96JP2 1530 aa20.14■□□□□ 0.81
USP28-205ENST00000537706 EIF4G1Q04637 1599 aaKnown RBP19.96■□□□□ 0.79
USP28-205ENST00000537706 CUX2O14529 1486 aa19.75■□□□□ 0.75
USP28-205ENST00000537706 SCRIBQ14160 1630 aa19.64■□□□□ 0.73
USP28-205ENST00000537706 DCAF1Q9Y4B6 1507 aa19.57■□□□□ 0.72
USP28-205ENST00000537706 ERCC6Q03468 1493 aa19.53■□□□□ 0.72
USP28-205ENST00000537706 ZCCHC6Q5VYS8 1495 aaKnown RBP19.47■□□□□ 0.71
USP28-205ENST00000537706 TRIM41Q8WV44 630 aa19.43■□□□□ 0.7
USP28-205ENST00000537706 NCAPD3P42695 1498 aa19.11■□□□□ 0.65
USP28-205ENST00000537706 NESP48681 1621 aa18.98■□□□□ 0.63
USP28-205ENST00000537706 THOC2Q8NI27 1593 aaKnown RBP18.94■□□□□ 0.62
USP28-205ENST00000537706 ATAD2BQ9ULI0 1458 aa18.91■□□□□ 0.62
USP28-205ENST00000537706 HMGXB3Q12766 1538 aa18.88■□□□□ 0.61
USP28-205ENST00000537706 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
USP28-205ENST00000537706 PDS5BQ9NTI5 1447 aa18.81■□□□□ 0.6
USP28-205ENST00000537706 LAMC3Q9Y6N6 1575 aa18.8■□□□□ 0.6
USP28-205ENST00000537706 OSCARQ8IYS5 282 aa18.75■□□□□ 0.59
USP28-205ENST00000537706 BAZ1BQ9UIG0 1483 aaKnown RBP18.73■□□□□ 0.59
USP28-205ENST00000537706 BAZ1AQ9NRL2 1556 aaPredicted RBP18.67■□□□□ 0.58
USP28-205ENST00000537706 KIF21AQ7Z4S6 1674 aa18.66■□□□□ 0.58
USP28-205ENST00000537706 SMARCA4P51532 1647 aa18.65■□□□□ 0.58
USP28-205ENST00000537706 MRC2Q9UBG0 1479 aa18.64■□□□□ 0.57
USP28-205ENST00000537706 AEBP2Q6ZN18 517 aaPredicted RBP18.6■□□□□ 0.57
USP28-205ENST00000537706 WDR62O43379 1518 aa18.56■□□□□ 0.56
USP28-205ENST00000537706 CADPSQ9ULU8 1353 aa18.52■□□□□ 0.55
USP28-205ENST00000537706 PEG3Q9GZU2 1588 aa18.47■□□□□ 0.55
USP28-205ENST00000537706 TRHP20396 242 aaPredicted RBP18.47■□□□□ 0.55
USP28-205ENST00000537706 RIMBP3CA6NJZ7 1639 aa18.44■□□□□ 0.54
USP28-205ENST00000537706 RIMBP3BA6NNM3 1639 aa18.44■□□□□ 0.54
USP28-205ENST00000537706 RIMBP3Q9UFD9 1639 aa18.44■□□□□ 0.54
USP28-205ENST00000537706 CEP164Q9UPV0 1460 aa18.41■□□□□ 0.54
USP28-205ENST00000537706 ARHGEF11O15085 1522 aa18.34■□□□□ 0.53
USP28-205ENST00000537706 CYB5RLQ6IPT4 315 aa18.33■□□□□ 0.52
USP28-205ENST00000537706 FANCD2Q9BXW9 1451 aa18.29■□□□□ 0.52
USP28-205ENST00000537706 MROH2BQ7Z745 1585 aa18.22■□□□□ 0.51
USP28-205ENST00000537706 URB2Q14146 1524 aaKnown RBP18.12■□□□□ 0.49
USP28-205ENST00000537706 CFTRP13569 1480 aa18.09■□□□□ 0.49
USP28-205ENST00000537706 ARAP1Q96P48 1450 aa18.09■□□□□ 0.49
USP28-205ENST00000537706 IFT140Q96RY7 1462 aa18.09■□□□□ 0.49
USP28-205ENST00000537706 RSF1Q96T23 1441 aaPredicted RBP18.04■□□□□ 0.48
USP28-205ENST00000537706 ZNF608Q9ULD9 1512 aaPredicted RBP18.02■□□□□ 0.48
USP28-205ENST00000537706 FBLN2P98095 1184 aa17.96■□□□□ 0.47
USP28-205ENST00000537706 WIZO95785 1651 aa17.93■□□□□ 0.46
USP28-205ENST00000537706 EIF4G3O43432 1585 aaKnown RBP17.89■□□□□ 0.45
USP28-205ENST00000537706 CHD1O14646 1710 aa17.86■□□□□ 0.45
USP28-205ENST00000537706 ABCC8Q09428 1581 aa17.84■□□□□ 0.45
USP28-205ENST00000537706 TOPBP1Q92547 1522 aa17.83■□□□□ 0.44
USP28-205ENST00000537706 AQRO60306 1485 aaKnown RBP eCLIP17.8■□□□□ 0.446e-6■■■■□ 25.1
USP28-205ENST00000537706 ILDR1Q86SU0 546 aaPredicted RBP17.76■□□□□ 0.43
USP28-205ENST00000537706 TOP2AP11388 1531 aaKnown RBP17.74■□□□□ 0.43
USP28-205ENST00000537706 PRDM2Q13029 1718 aa17.74■□□□□ 0.43
USP28-205ENST00000537706 CHMP7Q8WUX9 453 aaPredicted RBP17.71■□□□□ 0.43
USP28-205ENST00000537706 SYNJ1O43426 1573 aa17.7■□□□□ 0.42
USP28-205ENST00000537706 DNMBPQ6XZF7 1577 aa17.7■□□□□ 0.42
USP28-205ENST00000537706 CLASP1Q7Z460 1538 aa17.69■□□□□ 0.42
USP28-205ENST00000537706 TARBP1Q13395 1621 aaKnown RBP17.65■□□□□ 0.42
USP28-205ENST00000537706 GAPVD1Q14C86 1478 aa17.64■□□□□ 0.41
USP28-205ENST00000537706 SNAPC4Q5SXM2 1469 aa17.62■□□□□ 0.41
USP28-205ENST00000537706 TDRD9Q8NDG6 1382 aaKnown RBP17.59■□□□□ 0.41
USP28-205ENST00000537706 POLA1P09884 1462 aaPredicted RBP17.58■□□□□ 0.4
USP28-205ENST00000537706 MAGI1Q96QZ7 1491 aaPredicted RBP17.58■□□□□ 0.4
USP28-205ENST00000537706 SOGA1O94964 1423 aa17.56■□□□□ 0.4
USP28-205ENST00000537706 WDR97A6NE52 1622 aa17.54■□□□□ 0.4
USP28-205ENST00000537706 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
USP28-205ENST00000537706 SYNJ2O15056 1496 aa17.52■□□□□ 0.4
USP28-205ENST00000537706 RAD54L2Q9Y4B4 1467 aa17.52■□□□□ 0.4
USP28-205ENST00000537706 GRIN2BQ13224 1484 aa17.5■□□□□ 0.39
USP28-205ENST00000537706 KDM4FA0A1W2PPD8 638 aa17.42■□□□□ 0.38
USP28-205ENST00000537706 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
USP28-205ENST00000537706 FAM69CQ0P6D2 419 aa17.35■□□□□ 0.37
USP28-205ENST00000537706 NPM1P06748 294 aaKnown RBP eCLIP17.33■□□□□ 0.36
USP28-205ENST00000537706 KIF13AQ9H1H9 1805 aa17.3■□□□□ 0.36
USP28-205ENST00000537706 ERCC6L2Q5T890 1561 aa17.29■□□□□ 0.36
USP28-205ENST00000537706 CEP170Q5SW79 1584 aa17.27■□□□□ 0.36
USP28-205ENST00000537706 ABCC10Q5T3U5 1492 aa17.27■□□□□ 0.35
USP28-205ENST00000537706 KDM6BO15054 1643 aa17.26■□□□□ 0.35
USP28-205ENST00000537706 PBRM1Q86U86 1689 aa17.25■□□□□ 0.35
USP28-205ENST00000537706 GRIN2AQ12879 1464 aa17.23■□□□□ 0.35
USP28-205ENST00000537706 NUP160Q12769 1436 aa17.2■□□□□ 0.34
USP28-205ENST00000537706 CUX1P39880 1505 aa17.18■□□□□ 0.34
USP28-205ENST00000537706 FBXO41Q8TF61 875 aa17.16■□□□□ 0.34
USP28-205ENST00000537706 MAPKBP1O60336 1514 aa17.15■□□□□ 0.34
USP28-205ENST00000537706 SHROOM2Q13796 1616 aa17.15■□□□□ 0.34
USP28-205ENST00000537706 ABCA10Q8WWZ4 1543 aa17.14■□□□□ 0.33
USP28-205ENST00000537706 PRG4Q92954 1404 aaPredicted RBP17.14■□□□□ 0.33
USP28-205ENST00000537706 DIP2BQ9P265 1576 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms