RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NISCHQ9Y2I1 1504 aa36.41■■■■□ 3.42
USP28-204ENST00000537642 CCDC180Q9P1Z9 1646 aa32.46■■■□□ 2.79
USP28-204ENST00000537642 ABCC9O60706 1549 aa31.99■■■□□ 2.71
USP28-204ENST00000537642 RB1CC1Q8TDY2 1594 aa30.66■■■□□ 2.5
USP28-204ENST00000537642 NACADO15069 1562 aa30.57■■■□□ 2.48
USP28-204ENST00000537642 DCAF8L2P0C7V8 631 aa30.48■■■□□ 2.47
USP28-204ENST00000537642 MYO15BQ96JP2 1530 aa30.31■■■□□ 2.44
USP28-204ENST00000537642 ZCCHC6Q5VYS8 1495 aaKnown RBP30.28■■■□□ 2.44
USP28-204ENST00000537642 DCAF1Q9Y4B6 1507 aa30.1■■■□□ 2.41
USP28-204ENST00000537642 UNC13AQ9UPW8 1703 aa30.02■■■□□ 2.4
USP28-204ENST00000537642 PABPN1Q86U42 306 aaKnown RBP eCLIP29.86■■■□□ 2.37
USP28-204ENST00000537642 BICRAQ9NZM4 1560 aa29.78■■■□□ 2.36
USP28-204ENST00000537642 SCRIBQ14160 1630 aa29.61■■■□□ 2.33
USP28-204ENST00000537642 DNAJC5BQ9UF47 199 aa29.61■■■□□ 2.33
USP28-204ENST00000537642 SHROOM4Q9ULL8 1493 aa29.38■■■□□ 2.29
USP28-204ENST00000537642 EIF4G1Q04637 1599 aaKnown RBP28.99■■■□□ 2.23
USP28-204ENST00000537642 CC2D2AQ9P2K1 1620 aa28.94■■■□□ 2.22
USP28-204ENST00000537642 CECR2Q9BXF3 1484 aa28.76■■■□□ 2.19
USP28-204ENST00000537642 SMARCA4P51532 1647 aa28.3■■■□□ 2.12
USP28-204ENST00000537642 NCAPD3P42695 1498 aa28.21■■■□□ 2.11
USP28-204ENST00000537642 BAZ1AQ9NRL2 1556 aaPredicted RBP28.21■■■□□ 2.11
USP28-204ENST00000537642 ATAD2BQ9ULI0 1458 aa28.21■■■□□ 2.11
USP28-204ENST00000537642 SMARCA2P51531 1590 aa28.14■■■□□ 2.1
USP28-204ENST00000537642 MROH2BQ7Z745 1585 aa28.07■■■□□ 2.08
USP28-204ENST00000537642 HMGXB3Q12766 1538 aa28.05■■■□□ 2.08
USP28-204ENST00000537642 PEG3Q9GZU2 1588 aa28.03■■■□□ 2.08
USP28-204ENST00000537642 BAZ1BQ9UIG0 1483 aaKnown RBP27.95■■■□□ 2.06
USP28-204ENST00000537642 WIZO95785 1651 aa27.76■■■□□ 2.03
USP28-204ENST00000537642 RSF1Q96T23 1441 aaPredicted RBP27.66■■■□□ 2.02
USP28-204ENST00000537642 NESP48681 1621 aa27.63■■■□□ 2.01
USP28-204ENST00000537642 ERCC6Q03468 1493 aa27.57■■■□□ 2
USP28-204ENST00000537642 LAMC3Q9Y6N6 1575 aa27.5■■□□□ 1.99
USP28-204ENST00000537642 TOP2AP11388 1531 aaKnown RBP27.43■■□□□ 1.98
USP28-204ENST00000537642 CADPSQ9ULU8 1353 aa27.37■■□□□ 1.97
USP28-204ENST00000537642 CUX2O14529 1486 aa27.37■■□□□ 1.97
USP28-204ENST00000537642 PDS5BQ9NTI5 1447 aa27.31■■□□□ 1.96
USP28-204ENST00000537642 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
USP28-204ENST00000537642 THOC2Q8NI27 1593 aaKnown RBP27.26■■□□□ 1.96
USP28-204ENST00000537642 CFTRP13569 1480 aa27.17■■□□□ 1.94
USP28-204ENST00000537642 CCDC88BA6NC98 1476 aa27.12■■□□□ 1.93
USP28-204ENST00000537642 FANCD2Q9BXW9 1451 aa27.06■■□□□ 1.92
USP28-204ENST00000537642 MRC2Q9UBG0 1479 aa27.06■■□□□ 1.92
USP28-204ENST00000537642 CEP164Q9UPV0 1460 aa27.05■■□□□ 1.92
USP28-204ENST00000537642 WDR62O43379 1518 aa26.99■■□□□ 1.91
USP28-204ENST00000537642 PRDM2Q13029 1718 aa26.97■■□□□ 1.91
USP28-204ENST00000537642 URB2Q14146 1524 aaKnown RBP26.83■■□□□ 1.89
USP28-204ENST00000537642 DNAJC5Q9H3Z4 198 aa26.81■■□□□ 1.88
USP28-204ENST00000537642 SUPT5HO00267 1087 aaKnown RBP26.77■■□□□ 1.88
USP28-204ENST00000537642 TOPBP1Q92547 1522 aa26.62■■□□□ 1.85
USP28-204ENST00000537642 ABCC8Q09428 1581 aa26.57■■□□□ 1.84
USP28-204ENST00000537642 DNMBPQ6XZF7 1577 aa26.56■■□□□ 1.84
USP28-204ENST00000537642 IFT140Q96RY7 1462 aa26.49■■□□□ 1.83
USP28-204ENST00000537642 ZNF608Q9ULD9 1512 aaPredicted RBP26.42■■□□□ 1.82
USP28-204ENST00000537642 POLA1P09884 1462 aaPredicted RBP26.37■■□□□ 1.81
USP28-204ENST00000537642 TARBP1Q13395 1621 aaKnown RBP26.36■■□□□ 1.81
USP28-204ENST00000537642 CUX1P39880 1505 aa26.34■■□□□ 1.81
USP28-204ENST00000537642 EIF4G3O43432 1585 aaKnown RBP26.29■■□□□ 1.8
USP28-204ENST00000537642 FGD5Q6ZNL6 1462 aa26.28■■□□□ 1.8
USP28-204ENST00000537642 RAD54L2Q9Y4B4 1467 aa26.28■■□□□ 1.8
USP28-204ENST00000537642 SOGA1O94964 1423 aa26.25■■□□□ 1.79
USP28-204ENST00000537642 AQRO60306 1485 aaKnown RBP eCLIP26.23■■□□□ 1.796e-6■■■■□ 25.1
USP28-204ENST00000537642 OSCARQ8IYS5 282 aa26.18■■□□□ 1.78
USP28-204ENST00000537642 TDRD9Q8NDG6 1382 aaKnown RBP26.14■■□□□ 1.78
USP28-204ENST00000537642 WDR97A6NE52 1622 aa26.1■■□□□ 1.77
USP28-204ENST00000537642 WRNQ14191 1432 aaPredicted RBP eCLIP26.06■■□□□ 1.76
USP28-204ENST00000537642 TOP2BQ02880 1626 aa26.05■■□□□ 1.76
USP28-204ENST00000537642 BIVM-ERCC5R4GMW8 1640 aa26.05■■□□□ 1.76
USP28-204ENST00000537642 SYNJ1O43426 1573 aa26.04■■□□□ 1.76
USP28-204ENST00000537642 CHD1O14646 1710 aa26.02■■□□□ 1.76
USP28-204ENST00000537642 ABCA10Q8WWZ4 1543 aa26.01■■□□□ 1.75
USP28-204ENST00000537642 SNAPC4Q5SXM2 1469 aa25.98■■□□□ 1.75
USP28-204ENST00000537642 GRIN2BQ13224 1484 aa25.97■■□□□ 1.75
USP28-204ENST00000537642 GAPVD1Q14C86 1478 aa25.94■■□□□ 1.74
USP28-204ENST00000537642 FBLN2P98095 1184 aa25.94■■□□□ 1.74
USP28-204ENST00000537642 ABCA5Q8WWZ7 1642 aa25.94■■□□□ 1.74
USP28-204ENST00000537642 PBRM1Q86U86 1689 aa25.93■■□□□ 1.74
USP28-204ENST00000537642 MAGI1Q96QZ7 1491 aaPredicted RBP25.92■■□□□ 1.74
USP28-204ENST00000537642 CHMP7Q8WUX9 453 aaPredicted RBP25.83■■□□□ 1.73
USP28-204ENST00000537642 SYNJ2O15056 1496 aa25.83■■□□□ 1.73
USP28-204ENST00000537642 RIMBP3CA6NJZ7 1639 aa25.82■■□□□ 1.72
USP28-204ENST00000537642 RIMBP3BA6NNM3 1639 aa25.82■■□□□ 1.72
USP28-204ENST00000537642 RIMBP3Q9UFD9 1639 aa25.82■■□□□ 1.72
USP28-204ENST00000537642 TRIM41Q8WV44 630 aa25.82■■□□□ 1.72
USP28-204ENST00000537642 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
USP28-204ENST00000537642 CLASP1Q7Z460 1538 aa25.73■■□□□ 1.71
USP28-204ENST00000537642 ADAMTS12P58397 1594 aa25.7■■□□□ 1.71
USP28-204ENST00000537642 ERICH3Q5RHP9 1530 aa25.68■■□□□ 1.7
USP28-204ENST00000537642 GRIN2AQ12879 1464 aa25.64■■□□□ 1.69
USP28-204ENST00000537642 FHAD1B1AJZ9 1412 aa25.63■■□□□ 1.69
USP28-204ENST00000537642 ARAP1Q96P48 1450 aa25.58■■□□□ 1.69
USP28-204ENST00000537642 CYB5RLQ6IPT4 315 aa25.55■■□□□ 1.68
USP28-204ENST00000537642 CEP170Q5SW79 1584 aa25.55■■□□□ 1.68
USP28-204ENST00000537642 NUP160Q12769 1436 aa25.54■■□□□ 1.68
USP28-204ENST00000537642 KIF27Q86VH2 1401 aa25.53■■□□□ 1.68
USP28-204ENST00000537642 IGF1RP08069 1367 aa25.48■■□□□ 1.67
USP28-204ENST00000537642 CUL7Q14999 1698 aa25.41■■□□□ 1.66
USP28-204ENST00000537642 SHROOM2Q13796 1616 aa25.39■■□□□ 1.66
USP28-204ENST00000537642 ERCC6L2Q5T890 1561 aa25.38■■□□□ 1.65
USP28-204ENST00000537642 RUSC2Q8N2Y8 1516 aa25.32■■□□□ 1.64
USP28-204ENST00000537642 CARMIL1Q5VZK9 1371 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms