RNA–Protein interactions for RNA: ENST00000537597.1

SRRM4-202, Transcript of serine/arginine repetitive matrix 4, humanhuman

TSL 4

Gene SRRM4, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4-202ENST00000537597 NISCHQ9Y2I1 1504 aa36.95■■■■□ 3.5
SRRM4-202ENST00000537597 CCDC180Q9P1Z9 1646 aa32.72■■■□□ 2.83
SRRM4-202ENST00000537597 ABCC9O60706 1549 aa31.84■■■□□ 2.69
SRRM4-202ENST00000537597 ZCCHC6Q5VYS8 1495 aaKnown RBP30.8■■■□□ 2.52
SRRM4-202ENST00000537597 NACADO15069 1562 aa30.77■■■□□ 2.52
SRRM4-202ENST00000537597 MYO15BQ96JP2 1530 aa30.76■■■□□ 2.51
SRRM4-202ENST00000537597 RB1CC1Q8TDY2 1594 aa30.71■■■□□ 2.51
SRRM4-202ENST00000537597 DCAF1Q9Y4B6 1507 aa30.65■■■□□ 2.5
SRRM4-202ENST00000537597 DCAF8L2P0C7V8 631 aa30.56■■■□□ 2.48
SRRM4-202ENST00000537597 UNC13AQ9UPW8 1703 aa30.04■■■□□ 2.4
SRRM4-202ENST00000537597 BICRAQ9NZM4 1560 aa29.93■■■□□ 2.38
SRRM4-202ENST00000537597 PABPN1Q86U42 306 aaKnown RBP eCLIP29.8■■■□□ 2.36
SRRM4-202ENST00000537597 SCRIBQ14160 1630 aa29.75■■■□□ 2.35
SRRM4-202ENST00000537597 SHROOM4Q9ULL8 1493 aa29.58■■■□□ 2.33
SRRM4-202ENST00000537597 DNAJC5BQ9UF47 199 aa29.33■■■□□ 2.29
SRRM4-202ENST00000537597 EIF4G1Q04637 1599 aaKnown RBP29.02■■■□□ 2.24
SRRM4-202ENST00000537597 CC2D2AQ9P2K1 1620 aa28.85■■■□□ 2.21
SRRM4-202ENST00000537597 CECR2Q9BXF3 1484 aa28.78■■■□□ 2.2
SRRM4-202ENST00000537597 SMARCA4P51532 1647 aa28.58■■■□□ 2.17
SRRM4-202ENST00000537597 BAZ1AQ9NRL2 1556 aaPredicted RBP28.55■■■□□ 2.16
SRRM4-202ENST00000537597 NCAPD3P42695 1498 aa28.48■■■□□ 2.15
SRRM4-202ENST00000537597 ATAD2BQ9ULI0 1458 aa28.46■■■□□ 2.15
SRRM4-202ENST00000537597 MROH2BQ7Z745 1585 aa28.46■■■□□ 2.15
SRRM4-202ENST00000537597 PEG3Q9GZU2 1588 aa28.41■■■□□ 2.14
SRRM4-202ENST00000537597 SMARCA2P51531 1590 aa28.35■■■□□ 2.13
SRRM4-202ENST00000537597 HMGXB3Q12766 1538 aa28.27■■■□□ 2.12
SRRM4-202ENST00000537597 RSF1Q96T23 1441 aaPredicted RBP28.22■■■□□ 2.11
SRRM4-202ENST00000537597 BAZ1BQ9UIG0 1483 aaKnown RBP28.1■■■□□ 2.09
SRRM4-202ENST00000537597 WIZO95785 1651 aa28.1■■■□□ 2.09
SRRM4-202ENST00000537597 TOP2AP11388 1531 aaKnown RBP27.82■■■□□ 2.04
SRRM4-202ENST00000537597 NESP48681 1621 aa27.65■■■□□ 2.02
SRRM4-202ENST00000537597 CADPSQ9ULU8 1353 aa27.6■■■□□ 2.01
SRRM4-202ENST00000537597 LAMC3Q9Y6N6 1575 aa27.59■■■□□ 2.01
SRRM4-202ENST00000537597 CCDC88BA6NC98 1476 aa27.55■■■□□ 2
SRRM4-202ENST00000537597 CFTRP13569 1480 aa27.49■■□□□ 1.99
SRRM4-202ENST00000537597 PDS5BQ9NTI5 1447 aa27.39■■□□□ 1.97
SRRM4-202ENST00000537597 SUPT5HO00267 1087 aaKnown RBP27.37■■□□□ 1.97
SRRM4-202ENST00000537597 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
SRRM4-202ENST00000537597 KIF21AQ7Z4S6 1674 aa27.25■■□□□ 1.95
SRRM4-202ENST00000537597 FANCD2Q9BXW9 1451 aa27.21■■□□□ 1.95
SRRM4-202ENST00000537597 THOC2Q8NI27 1593 aaKnown RBP27.21■■□□□ 1.95
SRRM4-202ENST00000537597 CUX2O14529 1486 aa27.16■■□□□ 1.94
SRRM4-202ENST00000537597 PRDM2Q13029 1718 aa27.13■■□□□ 1.93
SRRM4-202ENST00000537597 CEP164Q9UPV0 1460 aa27.12■■□□□ 1.93
SRRM4-202ENST00000537597 MRC2Q9UBG0 1479 aa27.09■■□□□ 1.93
SRRM4-202ENST00000537597 WDR62O43379 1518 aa27.05■■□□□ 1.92
SRRM4-202ENST00000537597 URB2Q14146 1524 aaKnown RBP26.99■■□□□ 1.91
SRRM4-202ENST00000537597 TOPBP1Q92547 1522 aa26.81■■□□□ 1.88
SRRM4-202ENST00000537597 ABCC8Q09428 1581 aa26.81■■□□□ 1.88
SRRM4-202ENST00000537597 DNMBPQ6XZF7 1577 aa26.76■■□□□ 1.87
SRRM4-202ENST00000537597 CUX1P39880 1505 aa26.68■■□□□ 1.86
SRRM4-202ENST00000537597 POLA1P09884 1462 aaPredicted RBP26.61■■□□□ 1.85
SRRM4-202ENST00000537597 IFT140Q96RY7 1462 aa26.6■■□□□ 1.85
SRRM4-202ENST00000537597 TARBP1Q13395 1621 aaKnown RBP26.56■■□□□ 1.84
SRRM4-202ENST00000537597 FGD5Q6ZNL6 1462 aa26.51■■□□□ 1.83
SRRM4-202ENST00000537597 WRNQ14191 1432 aaPredicted RBP eCLIP26.5■■□□□ 1.83
SRRM4-202ENST00000537597 ZNF608Q9ULD9 1512 aaPredicted RBP26.49■■□□□ 1.83
SRRM4-202ENST00000537597 SOGA1O94964 1423 aa26.48■■□□□ 1.83
SRRM4-202ENST00000537597 RAD54L2Q9Y4B4 1467 aa26.47■■□□□ 1.83
SRRM4-202ENST00000537597 TOP2BQ02880 1626 aa26.47■■□□□ 1.83
SRRM4-202ENST00000537597 BIVM-ERCC5R4GMW8 1640 aa26.45■■□□□ 1.82
SRRM4-202ENST00000537597 SYNJ1O43426 1573 aa26.45■■□□□ 1.82
SRRM4-202ENST00000537597 AQRO60306 1485 aaKnown RBP eCLIP26.35■■□□□ 1.81
SRRM4-202ENST00000537597 ABCA10Q8WWZ4 1543 aa26.34■■□□□ 1.81
SRRM4-202ENST00000537597 WDR97A6NE52 1622 aa26.32■■□□□ 1.8
SRRM4-202ENST00000537597 EIF4G3O43432 1585 aaKnown RBP26.31■■□□□ 1.8
SRRM4-202ENST00000537597 TDRD9Q8NDG6 1382 aaKnown RBP26.3■■□□□ 1.8
SRRM4-202ENST00000537597 DNAJC5Q9H3Z4 198 aa26.27■■□□□ 1.8
SRRM4-202ENST00000537597 ABCA5Q8WWZ7 1642 aa26.18■■□□□ 1.78
SRRM4-202ENST00000537597 GAPVD1Q14C86 1478 aa26.16■■□□□ 1.78
SRRM4-202ENST00000537597 GRIN2BQ13224 1484 aa26.14■■□□□ 1.78
SRRM4-202ENST00000537597 MAGI1Q96QZ7 1491 aaPredicted RBP26.06■■□□□ 1.76
SRRM4-202ENST00000537597 SNAPC4Q5SXM2 1469 aa26.05■■□□□ 1.76
SRRM4-202ENST00000537597 OSCARQ8IYS5 282 aa26.05■■□□□ 1.76
SRRM4-202ENST00000537597 PBRM1Q86U86 1689 aa26.01■■□□□ 1.75
SRRM4-202ENST00000537597 ERICH3Q5RHP9 1530 aa25.99■■□□□ 1.75
SRRM4-202ENST00000537597 SYNJ2O15056 1496 aa25.97■■□□□ 1.75
SRRM4-202ENST00000537597 IGF1RP08069 1367 aa25.95■■□□□ 1.74
SRRM4-202ENST00000537597 CHD1O14646 1710 aa25.93■■□□□ 1.74
SRRM4-202ENST00000537597 KIF27Q86VH2 1401 aa25.92■■□□□ 1.74
SRRM4-202ENST00000537597 FHAD1B1AJZ9 1412 aa25.88■■□□□ 1.73
SRRM4-202ENST00000537597 ADAMTS12P58397 1594 aa25.88■■□□□ 1.73
SRRM4-202ENST00000537597 TRIM41Q8WV44 630 aa25.88■■□□□ 1.73
SRRM4-202ENST00000537597 CHMP7Q8WUX9 453 aaPredicted RBP25.87■■□□□ 1.73
SRRM4-202ENST00000537597 FBLN2P98095 1184 aa25.83■■□□□ 1.73
SRRM4-202ENST00000537597 RUSC2Q8N2Y8 1516 aa25.82■■□□□ 1.72
SRRM4-202ENST00000537597 GRIN2AQ12879 1464 aa25.8■■□□□ 1.72
SRRM4-202ENST00000537597 CHIC1Q5VXU3 224 aa25.8■■□□□ 1.72
SRRM4-202ENST00000537597 CLASP1Q7Z460 1538 aa25.79■■□□□ 1.72
SRRM4-202ENST00000537597 NUP160Q12769 1436 aa25.77■■□□□ 1.72
SRRM4-202ENST00000537597 CUL7Q14999 1698 aa25.7■■□□□ 1.7
SRRM4-202ENST00000537597 CARMIL1Q5VZK9 1371 aa25.69■■□□□ 1.7
SRRM4-202ENST00000537597 CEP170Q5SW79 1584 aa25.69■■□□□ 1.7
SRRM4-202ENST00000537597 ARHGEF11O15085 1522 aa25.62■■□□□ 1.69
SRRM4-202ENST00000537597 RIMBP3CA6NJZ7 1639 aa25.58■■□□□ 1.69
SRRM4-202ENST00000537597 RIMBP3BA6NNM3 1639 aa25.58■■□□□ 1.69
SRRM4-202ENST00000537597 RIMBP3Q9UFD9 1639 aa25.58■■□□□ 1.69
SRRM4-202ENST00000537597 PRXQ9BXM0 1461 aa25.58■■□□□ 1.69
SRRM4-202ENST00000537597 SHROOM2Q13796 1616 aa25.54■■□□□ 1.68
SRRM4-202ENST00000537597 RAPGEF2Q9Y4G8 1499 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms