RNA–Protein interactions for RNA: ENST00000537582.1

SFSWAP-206, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 1,576 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-206ENST00000537582 NISCHQ9Y2I1 1504 aa36.68■■■■□ 3.46
SFSWAP-206ENST00000537582 CCDC180Q9P1Z9 1646 aa32.18■■■□□ 2.74
SFSWAP-206ENST00000537582 ABCC9O60706 1549 aa30.98■■■□□ 2.55
SFSWAP-206ENST00000537582 ZCCHC6Q5VYS8 1495 aaKnown RBP30.72■■■□□ 2.51
SFSWAP-206ENST00000537582 DCAF8L2P0C7V8 631 aa30.46■■■□□ 2.47
SFSWAP-206ENST00000537582 DCAF1Q9Y4B6 1507 aa30.27■■■□□ 2.44
SFSWAP-206ENST00000537582 NACADO15069 1562 aa30.09■■■□□ 2.41
SFSWAP-206ENST00000537582 MYO15BQ96JP2 1530 aa30.08■■■□□ 2.41
SFSWAP-206ENST00000537582 RB1CC1Q8TDY2 1594 aa29.96■■■□□ 2.39
SFSWAP-206ENST00000537582 SHROOM4Q9ULL8 1493 aa29.64■■■□□ 2.34
SFSWAP-206ENST00000537582 SCRIBQ14160 1630 aa29.61■■■□□ 2.33
SFSWAP-206ENST00000537582 UNC13AQ9UPW8 1703 aa29.37■■■□□ 2.29
SFSWAP-206ENST00000537582 BICRAQ9NZM4 1560 aa29.14■■■□□ 2.26
SFSWAP-206ENST00000537582 PABPN1Q86U42 306 aaKnown RBP eCLIP29.13■■■□□ 2.252e-6■■□□□ 13.9
SFSWAP-206ENST00000537582 CECR2Q9BXF3 1484 aa28.61■■■□□ 2.17
SFSWAP-206ENST00000537582 MROH2BQ7Z745 1585 aa28.36■■■□□ 2.13
SFSWAP-206ENST00000537582 BAZ1AQ9NRL2 1556 aaPredicted RBP28.34■■■□□ 2.13
SFSWAP-206ENST00000537582 SMARCA4P51532 1647 aa28.31■■■□□ 2.12
SFSWAP-206ENST00000537582 EIF4G1Q04637 1599 aaKnown RBP28.28■■■□□ 2.12
SFSWAP-206ENST00000537582 RSF1Q96T23 1441 aaPredicted RBP28.28■■■□□ 2.12
SFSWAP-206ENST00000537582 SUPT5HO00267 1087 aaKnown RBP28.21■■■□□ 2.11
SFSWAP-206ENST00000537582 WIZO95785 1651 aa28.09■■■□□ 2.09
SFSWAP-206ENST00000537582 CC2D2AQ9P2K1 1620 aa27.99■■■□□ 2.07
SFSWAP-206ENST00000537582 ATAD2BQ9ULI0 1458 aa27.97■■■□□ 2.07
SFSWAP-206ENST00000537582 PEG3Q9GZU2 1588 aa27.95■■■□□ 2.06
SFSWAP-206ENST00000537582 SMARCA2P51531 1590 aa27.9■■■□□ 2.06
SFSWAP-206ENST00000537582 DNAJC5BQ9UF47 199 aa27.82■■■□□ 2.04
SFSWAP-206ENST00000537582 NCAPD3P42695 1498 aa27.79■■■□□ 2.04
SFSWAP-206ENST00000537582 BAZ1BQ9UIG0 1483 aaKnown RBP27.77■■■□□ 2.04
SFSWAP-206ENST00000537582 TOP2AP11388 1531 aaKnown RBP27.76■■■□□ 2.03
SFSWAP-206ENST00000537582 HMGXB3Q12766 1538 aa27.7■■■□□ 2.03
SFSWAP-206ENST00000537582 CCDC88BA6NC98 1476 aa27.48■■□□□ 1.99
SFSWAP-206ENST00000537582 NESP48681 1621 aa27.06■■□□□ 1.92
SFSWAP-206ENST00000537582 CADPSQ9ULU8 1353 aa27.05■■□□□ 1.92
SFSWAP-206ENST00000537582 CFTRP13569 1480 aa27.05■■□□□ 1.92
SFSWAP-206ENST00000537582 LAMC3Q9Y6N6 1575 aa26.91■■□□□ 1.9
SFSWAP-206ENST00000537582 PRDM2Q13029 1718 aa26.83■■□□□ 1.89
SFSWAP-206ENST00000537582 ABCC8Q09428 1581 aa26.78■■□□□ 1.88
SFSWAP-206ENST00000537582 FANCD2Q9BXW9 1451 aa26.77■■□□□ 1.88
SFSWAP-206ENST00000537582 CHIC1Q5VXU3 224 aa26.72■■□□□ 1.87
SFSWAP-206ENST00000537582 PDS5BQ9NTI5 1447 aa26.71■■□□□ 1.87
SFSWAP-206ENST00000537582 KIF21AQ7Z4S6 1674 aa26.68■■□□□ 1.86
SFSWAP-206ENST00000537582 CEP164Q9UPV0 1460 aa26.64■■□□□ 1.86
SFSWAP-206ENST00000537582 WRNQ14191 1432 aaPredicted RBP eCLIP26.6■■□□□ 1.859e-6■■■■■ 50.1
SFSWAP-206ENST00000537582 SYNJ1O43426 1573 aa26.57■■□□□ 1.84
SFSWAP-206ENST00000537582 ERCC6Q03468 1493 aa26.56■■□□□ 1.84
SFSWAP-206ENST00000537582 CUX1P39880 1505 aa26.54■■□□□ 1.84
SFSWAP-206ENST00000537582 TRIM41Q8WV44 630 aa26.51■■□□□ 1.83
SFSWAP-206ENST00000537582 URB2Q14146 1524 aaKnown RBP26.5■■□□□ 1.83
SFSWAP-206ENST00000537582 TOP2BQ02880 1626 aa26.45■■□□□ 1.82
SFSWAP-206ENST00000537582 MRC2Q9UBG0 1479 aa26.44■■□□□ 1.82
SFSWAP-206ENST00000537582 TOPBP1Q92547 1522 aa26.43■■□□□ 1.82
SFSWAP-206ENST00000537582 BIVM-ERCC5R4GMW8 1640 aa26.43■■□□□ 1.82
SFSWAP-206ENST00000537582 DNMBPQ6XZF7 1577 aa26.42■■□□□ 1.82
SFSWAP-206ENST00000537582 THOC2Q8NI27 1593 aaKnown RBP26.39■■□□□ 1.82
SFSWAP-206ENST00000537582 WDR62O43379 1518 aa26.33■■□□□ 1.81
SFSWAP-206ENST00000537582 FGD5Q6ZNL6 1462 aa26.32■■□□□ 1.8
SFSWAP-206ENST00000537582 POLA1P09884 1462 aaPredicted RBP26.27■■□□□ 1.8
SFSWAP-206ENST00000537582 RAD54L2Q9Y4B4 1467 aa26.21■■□□□ 1.79
SFSWAP-206ENST00000537582 CUX2O14529 1486 aa26.16■■□□□ 1.78
SFSWAP-206ENST00000537582 SOGA1O94964 1423 aa26.16■■□□□ 1.78
SFSWAP-206ENST00000537582 RUSC2Q8N2Y8 1516 aa26.12■■□□□ 1.77
SFSWAP-206ENST00000537582 FAM9AQ8IZU1 332 aaPredicted RBP26.09■■□□□ 1.77
SFSWAP-206ENST00000537582 TARBP1Q13395 1621 aaKnown RBP26.08■■□□□ 1.77
SFSWAP-206ENST00000537582 ABCA10Q8WWZ4 1543 aa26.04■■□□□ 1.76
SFSWAP-206ENST00000537582 WDR97A6NE52 1622 aa26.03■■□□□ 1.76
SFSWAP-206ENST00000537582 IFT140Q96RY7 1462 aa26.02■■□□□ 1.76
SFSWAP-206ENST00000537582 TDRD9Q8NDG6 1382 aaKnown RBP25.98■■□□□ 1.75
SFSWAP-206ENST00000537582 ZNF608Q9ULD9 1512 aaPredicted RBP25.98■■□□□ 1.75
SFSWAP-206ENST00000537582 KIF27Q86VH2 1401 aa25.95■■□□□ 1.75
SFSWAP-206ENST00000537582 AQRO60306 1485 aaKnown RBP eCLIP25.91■■□□□ 1.743e-11■■■□□ 18.3
SFSWAP-206ENST00000537582 ABCA5Q8WWZ7 1642 aa25.9■■□□□ 1.74
SFSWAP-206ENST00000537582 EEA1Q15075 1411 aa25.88■■□□□ 1.73
SFSWAP-206ENST00000537582 GAPVD1Q14C86 1478 aa25.86■■□□□ 1.73
SFSWAP-206ENST00000537582 CSRNP3Q8WYN3 585 aa25.84■■□□□ 1.73
SFSWAP-206ENST00000537582 EIF4G3O43432 1585 aaKnown RBP25.84■■□□□ 1.73
SFSWAP-206ENST00000537582 IGF1RP08069 1367 aa25.81■■□□□ 1.72
SFSWAP-206ENST00000537582 EHMT2Q96KQ7 1210 aa25.79■■□□□ 1.72
SFSWAP-206ENST00000537582 PBRM1Q86U86 1689 aa25.75■■□□□ 1.71
SFSWAP-206ENST00000537582 LOC105371045A0A1W2PR82 267 aa25.73■■□□□ 1.71
SFSWAP-206ENST00000537582 GRIN2BQ13224 1484 aa25.72■■□□□ 1.71
SFSWAP-206ENST00000537582 ERICH3Q5RHP9 1530 aa25.71■■□□□ 1.71
SFSWAP-206ENST00000537582 PRXQ9BXM0 1461 aa25.68■■□□□ 1.7
SFSWAP-206ENST00000537582 SNAPC4Q5SXM2 1469 aa25.65■■□□□ 1.7
SFSWAP-206ENST00000537582 CARMIL1Q5VZK9 1371 aa25.65■■□□□ 1.7
SFSWAP-206ENST00000537582 RAPGEF2Q9Y4G8 1499 aa25.64■■□□□ 1.69
SFSWAP-206ENST00000537582 KIF21BO75037 1637 aa25.63■■□□□ 1.69
SFSWAP-206ENST00000537582 CUL7Q14999 1698 aa25.62■■□□□ 1.69
SFSWAP-206ENST00000537582 ADAMTS12P58397 1594 aa25.6■■□□□ 1.69
SFSWAP-206ENST00000537582 GOLGA3Q08378 1498 aa25.56■■□□□ 1.68
SFSWAP-206ENST00000537582 FHAD1B1AJZ9 1412 aa25.55■■□□□ 1.68
SFSWAP-206ENST00000537582 MAGI1Q96QZ7 1491 aaPredicted RBP25.55■■□□□ 1.68
SFSWAP-206ENST00000537582 SYNJ2O15056 1496 aa25.47■■□□□ 1.67
SFSWAP-206ENST00000537582 UBTFP17480 764 aaKnown RBP25.47■■□□□ 1.67
SFSWAP-206ENST00000537582 FBLN2P98095 1184 aa25.45■■□□□ 1.66
SFSWAP-206ENST00000537582 GRIN2AQ12879 1464 aa25.42■■□□□ 1.66
SFSWAP-206ENST00000537582 CHMP7Q8WUX9 453 aaPredicted RBP25.42■■□□□ 1.66
SFSWAP-206ENST00000537582 CHD1O14646 1710 aa25.37■■□□□ 1.65
SFSWAP-206ENST00000537582 TNIKQ9UKE5 1360 aa25.36■■□□□ 1.65
SFSWAP-206ENST00000537582 CEP170Q5SW79 1584 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms