RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 NISCHQ9Y2I1 1504 aa34.68■■■■□ 3.14
SYNE1-235ENST00000537033 CCDC180Q9P1Z9 1646 aa31.16■■■□□ 2.58
SYNE1-235ENST00000537033 ABCC9O60706 1549 aa30.95■■■□□ 2.55
SYNE1-235ENST00000537033 RB1CC1Q8TDY2 1594 aa29.59■■■□□ 2.33
SYNE1-235ENST00000537033 NACADO15069 1562 aa29.39■■■□□ 2.3
SYNE1-235ENST00000537033 DCAF8L2P0C7V8 631 aa29.2■■■□□ 2.26
SYNE1-235ENST00000537033 MYO15BQ96JP2 1530 aa29■■■□□ 2.23
SYNE1-235ENST00000537033 UNC13AQ9UPW8 1703 aa28.91■■■□□ 2.22
SYNE1-235ENST00000537033 DNAJC5BQ9UF47 199 aa28.79■■■□□ 2.2
SYNE1-235ENST00000537033 ZCCHC6Q5VYS8 1495 aaKnown RBP28.78■■■□□ 2.2
SYNE1-235ENST00000537033 PABPN1Q86U42 306 aaKnown RBP eCLIP28.77■■■□□ 2.2
SYNE1-235ENST00000537033 DCAF1Q9Y4B6 1507 aa28.68■■■□□ 2.18
SYNE1-235ENST00000537033 BICRAQ9NZM4 1560 aa28.63■■■□□ 2.17
SYNE1-235ENST00000537033 SCRIBQ14160 1630 aa28.36■■■□□ 2.13
SYNE1-235ENST00000537033 SHROOM4Q9ULL8 1493 aa28.35■■■□□ 2.13
SYNE1-235ENST00000537033 CC2D2AQ9P2K1 1620 aa28■■■□□ 2.07
SYNE1-235ENST00000537033 EIF4G1Q04637 1599 aaKnown RBP27.96■■■□□ 2.07
SYNE1-235ENST00000537033 CECR2Q9BXF3 1484 aa27.88■■■□□ 2.05
SYNE1-235ENST00000537033 NCAPD3P42695 1498 aa27.07■■□□□ 1.92
SYNE1-235ENST00000537033 SMARCA4P51532 1647 aa27.07■■□□□ 1.92
SYNE1-235ENST00000537033 SMARCA2P51531 1590 aa27.01■■□□□ 1.92
SYNE1-235ENST00000537033 ATAD2BQ9ULI0 1458 aa27.01■■□□□ 1.91
SYNE1-235ENST00000537033 BAZ1AQ9NRL2 1556 aaPredicted RBP26.96■■□□□ 1.91
SYNE1-235ENST00000537033 HMGXB3Q12766 1538 aa26.95■■□□□ 1.9
SYNE1-235ENST00000537033 BAZ1BQ9UIG0 1483 aaKnown RBP26.81■■□□□ 1.88
SYNE1-235ENST00000537033 PEG3Q9GZU2 1588 aa26.79■■□□□ 1.88
SYNE1-235ENST00000537033 ERCC6Q03468 1493 aa26.78■■□□□ 1.88
SYNE1-235ENST00000537033 MROH2BQ7Z745 1585 aa26.71■■□□□ 1.87
SYNE1-235ENST00000537033 CUX2O14529 1486 aa26.67■■□□□ 1.86
SYNE1-235ENST00000537033 NESP48681 1621 aa26.59■■□□□ 1.85
SYNE1-235ENST00000537033 LAMC3Q9Y6N6 1575 aa26.51■■□□□ 1.83
SYNE1-235ENST00000537033 WIZO95785 1651 aa26.42■■□□□ 1.82
SYNE1-235ENST00000537033 DNAJC5Q9H3Z4 198 aa26.42■■□□□ 1.82
SYNE1-235ENST00000537033 THOC2Q8NI27 1593 aaKnown RBP26.37■■□□□ 1.81
SYNE1-235ENST00000537033 KIF21AQ7Z4S6 1674 aa26.34■■□□□ 1.81
SYNE1-235ENST00000537033 PDS5BQ9NTI5 1447 aa26.33■■□□□ 1.81
SYNE1-235ENST00000537033 CADPSQ9ULU8 1353 aa26.25■■□□□ 1.79
SYNE1-235ENST00000537033 RSF1Q96T23 1441 aaPredicted RBP26.18■■□□□ 1.78
SYNE1-235ENST00000537033 TOP2AP11388 1531 aaKnown RBP26.12■■□□□ 1.77
SYNE1-235ENST00000537033 MRC2Q9UBG0 1479 aa26.11■■□□□ 1.77
SYNE1-235ENST00000537033 CEP164Q9UPV0 1460 aa26.04■■□□□ 1.76
SYNE1-235ENST00000537033 WDR62O43379 1518 aa26.04■■□□□ 1.76
SYNE1-235ENST00000537033 CFTRP13569 1480 aa25.99■■□□□ 1.75
SYNE1-235ENST00000537033 FANCD2Q9BXW9 1451 aa25.98■■□□□ 1.75
SYNE1-235ENST00000537033 PRDM2Q13029 1718 aa25.88■■□□□ 1.73
SYNE1-235ENST00000537033 CCDC88BA6NC98 1476 aa25.77■■□□□ 1.72
SYNE1-235ENST00000537033 URB2Q14146 1524 aaKnown RBP25.74■■□□□ 1.71
SYNE1-235ENST00000537033 TOPBP1Q92547 1522 aa25.51■■□□□ 1.67
SYNE1-235ENST00000537033 ABCC8Q09428 1581 aa25.51■■□□□ 1.67
SYNE1-235ENST00000537033 IFT140Q96RY7 1462 aa25.49■■□□□ 1.67
SYNE1-235ENST00000537033 DNMBPQ6XZF7 1577 aa25.47■■□□□ 1.67
SYNE1-235ENST00000537033 OSCARQ8IYS5 282 aa25.42■■□□□ 1.66
SYNE1-235ENST00000537033 ZNF608Q9ULD9 1512 aaPredicted RBP25.39■■□□□ 1.66
SYNE1-235ENST00000537033 TRIM41Q8WV44 630 aa25.36■■□□□ 1.65
SYNE1-235ENST00000537033 EIF4G3O43432 1585 aaKnown RBP25.34■■□□□ 1.65
SYNE1-235ENST00000537033 TARBP1Q13395 1621 aaKnown RBP25.28■■□□□ 1.64
SYNE1-235ENST00000537033 POLA1P09884 1462 aaPredicted RBP25.25■■□□□ 1.63
SYNE1-235ENST00000537033 AQRO60306 1485 aaKnown RBP eCLIP25.17■■□□□ 1.62
SYNE1-235ENST00000537033 CHD1O14646 1710 aa25.14■■□□□ 1.61
SYNE1-235ENST00000537033 SOGA1O94964 1423 aa25.12■■□□□ 1.61
SYNE1-235ENST00000537033 RIMBP3CA6NJZ7 1639 aa25.12■■□□□ 1.61
SYNE1-235ENST00000537033 RIMBP3BA6NNM3 1639 aa25.12■■□□□ 1.61
SYNE1-235ENST00000537033 RIMBP3Q9UFD9 1639 aa25.12■■□□□ 1.61
SYNE1-235ENST00000537033 FGD5Q6ZNL6 1462 aa25.12■■□□□ 1.61
SYNE1-235ENST00000537033 RAD54L2Q9Y4B4 1467 aa25.12■■□□□ 1.61
SYNE1-235ENST00000537033 SUPT5HO00267 1087 aaKnown RBP25.11■■□□□ 1.61
SYNE1-235ENST00000537033 WDR97A6NE52 1622 aa25.1■■□□□ 1.61
SYNE1-235ENST00000537033 CUX1P39880 1505 aa25.1■■□□□ 1.61
SYNE1-235ENST00000537033 ARHGEF11O15085 1522 aa25.04■■□□□ 1.6
SYNE1-235ENST00000537033 TDRD9Q8NDG6 1382 aaKnown RBP25.03■■□□□ 1.6
SYNE1-235ENST00000537033 FBLN2P98095 1184 aa25.02■■□□□ 1.6
SYNE1-235ENST00000537033 SNAPC4Q5SXM2 1469 aa24.96■■□□□ 1.59
SYNE1-235ENST00000537033 MAGI1Q96QZ7 1491 aaPredicted RBP24.93■■□□□ 1.58
SYNE1-235ENST00000537033 GRIN2BQ13224 1484 aa24.92■■□□□ 1.58
SYNE1-235ENST00000537033 PBRM1Q86U86 1689 aa24.9■■□□□ 1.58
SYNE1-235ENST00000537033 SYNJ1O43426 1573 aa24.85■■□□□ 1.57
SYNE1-235ENST00000537033 CHMP7Q8WUX9 453 aaPredicted RBP24.85■■□□□ 1.57
SYNE1-235ENST00000537033 GAPVD1Q14C86 1478 aa24.84■■□□□ 1.57
SYNE1-235ENST00000537033 ABCA10Q8WWZ4 1543 aa24.84■■□□□ 1.57
SYNE1-235ENST00000537033 SYNJ2O15056 1496 aa24.83■■□□□ 1.57
SYNE1-235ENST00000537033 ABCA5Q8WWZ7 1642 aa24.83■■□□□ 1.56
SYNE1-235ENST00000537033 CLASP1Q7Z460 1538 aa24.81■■□□□ 1.56
SYNE1-235ENST00000537033 CYB5RLQ6IPT4 315 aa24.8■■□□□ 1.56
SYNE1-235ENST00000537033 BIVM-ERCC5R4GMW8 1640 aa24.79■■□□□ 1.56
SYNE1-235ENST00000537033 ARAP1Q96P48 1450 aa24.78■■□□□ 1.56
SYNE1-235ENST00000537033 WRNQ14191 1432 aaPredicted RBP eCLIP24.78■■□□□ 1.56
SYNE1-235ENST00000537033 TOP2BQ02880 1626 aa24.77■■□□□ 1.56
SYNE1-235ENST00000537033 ADAMTS12P58397 1594 aa24.63■■□□□ 1.53
SYNE1-235ENST00000537033 GRIN2AQ12879 1464 aa24.6■■□□□ 1.53
SYNE1-235ENST00000537033 ERICH3Q5RHP9 1530 aa24.56■■□□□ 1.52
SYNE1-235ENST00000537033 FHAD1B1AJZ9 1412 aa24.53■■□□□ 1.52
SYNE1-235ENST00000537033 TRHP20396 242 aaPredicted RBP24.53■■□□□ 1.52
SYNE1-235ENST00000537033 CEP170Q5SW79 1584 aa24.5■■□□□ 1.51
SYNE1-235ENST00000537033 NUP160Q12769 1436 aa24.49■■□□□ 1.51
SYNE1-235ENST00000537033 SHROOM2Q13796 1616 aa24.41■■□□□ 1.5
SYNE1-235ENST00000537033 ERCC6L2Q5T890 1561 aa24.38■■□□□ 1.49
SYNE1-235ENST00000537033 RUSC2Q8N2Y8 1516 aa24.29■■□□□ 1.48
SYNE1-235ENST00000537033 KIF27Q86VH2 1401 aa24.28■■□□□ 1.48
SYNE1-235ENST00000537033 CUL7Q14999 1698 aa24.27■■□□□ 1.48
SYNE1-235ENST00000537033 PRG4Q92954 1404 aaPredicted RBP24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms