RNA–Protein interactions for RNA: ENST00000536569.1

MRPS35-202, Transcript of mitochondrial ribosomal protein S35, humanhuman

TSL 4

Gene MRPS35, Length 557 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS35-202ENST00000536569 NISCHQ9Y2I1 1504 aa32.76■■■□□ 2.83
MRPS35-202ENST00000536569 CCDC180Q9P1Z9 1646 aa29.34■■■□□ 2.29
MRPS35-202ENST00000536569 ABCC9O60706 1549 aa29.04■■■□□ 2.24
MRPS35-202ENST00000536569 RB1CC1Q8TDY2 1594 aa27.83■■■□□ 2.05
MRPS35-202ENST00000536569 NACADO15069 1562 aa27.71■■■□□ 2.03
MRPS35-202ENST00000536569 DCAF8L2P0C7V8 631 aa27.47■■□□□ 1.99
MRPS35-202ENST00000536569 MYO15BQ96JP2 1530 aa27.46■■□□□ 1.99
MRPS35-202ENST00000536569 ZCCHC6Q5VYS8 1495 aaKnown RBP27.19■■□□□ 1.94
MRPS35-202ENST00000536569 DCAF1Q9Y4B6 1507 aa27.15■■□□□ 1.94
MRPS35-202ENST00000536569 UNC13AQ9UPW8 1703 aa27.1■■□□□ 1.93
MRPS35-202ENST00000536569 DNAJC5BQ9UF47 199 aa27.06■■□□□ 1.92
MRPS35-202ENST00000536569 PABPN1Q86U42 306 aaKnown RBP eCLIP27.05■■□□□ 1.92
MRPS35-202ENST00000536569 BICRAQ9NZM4 1560 aa26.95■■□□□ 1.9
MRPS35-202ENST00000536569 SHROOM4Q9ULL8 1493 aa26.77■■□□□ 1.88
MRPS35-202ENST00000536569 SCRIBQ14160 1630 aa26.63■■□□□ 1.85
MRPS35-202ENST00000536569 EIF4G1Q04637 1599 aaKnown RBP26.29■■□□□ 1.8
MRPS35-202ENST00000536569 CC2D2AQ9P2K1 1620 aa26.28■■□□□ 1.8
MRPS35-202ENST00000536569 CECR2Q9BXF3 1484 aa26.2■■□□□ 1.78
MRPS35-202ENST00000536569 NCAPD3P42695 1498 aa25.58■■□□□ 1.69
MRPS35-202ENST00000536569 SMARCA4P51532 1647 aa25.48■■□□□ 1.67
MRPS35-202ENST00000536569 ATAD2BQ9ULI0 1458 aa25.48■■□□□ 1.67
MRPS35-202ENST00000536569 SMARCA2P51531 1590 aa25.46■■□□□ 1.67
MRPS35-202ENST00000536569 BAZ1AQ9NRL2 1556 aaPredicted RBP25.44■■□□□ 1.66
MRPS35-202ENST00000536569 HMGXB3Q12766 1538 aa25.4■■□□□ 1.66
MRPS35-202ENST00000536569 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
MRPS35-202ENST00000536569 BAZ1BQ9UIG0 1483 aaKnown RBP25.24■■□□□ 1.63
MRPS35-202ENST00000536569 MROH2BQ7Z745 1585 aa25.18■■□□□ 1.62
MRPS35-202ENST00000536569 ERCC6Q03468 1493 aa25.11■■□□□ 1.61
MRPS35-202ENST00000536569 CUX2O14529 1486 aa25.08■■□□□ 1.6
MRPS35-202ENST00000536569 NESP48681 1621 aa24.99■■□□□ 1.59
MRPS35-202ENST00000536569 LAMC3Q9Y6N6 1575 aa24.96■■□□□ 1.59
MRPS35-202ENST00000536569 WIZO95785 1651 aa24.87■■□□□ 1.57
MRPS35-202ENST00000536569 PDS5BQ9NTI5 1447 aa24.82■■□□□ 1.56
MRPS35-202ENST00000536569 DNAJC5Q9H3Z4 198 aa24.81■■□□□ 1.56
MRPS35-202ENST00000536569 CADPSQ9ULU8 1353 aa24.8■■□□□ 1.56
MRPS35-202ENST00000536569 RSF1Q96T23 1441 aaPredicted RBP24.77■■□□□ 1.56
MRPS35-202ENST00000536569 THOC2Q8NI27 1593 aaKnown RBP24.75■■□□□ 1.55
MRPS35-202ENST00000536569 KIF21AQ7Z4S6 1674 aa24.68■■□□□ 1.54
MRPS35-202ENST00000536569 TOP2AP11388 1531 aaKnown RBP24.64■■□□□ 1.53
MRPS35-202ENST00000536569 MRC2Q9UBG0 1479 aa24.56■■□□□ 1.52
MRPS35-202ENST00000536569 CFTRP13569 1480 aa24.55■■□□□ 1.52
MRPS35-202ENST00000536569 CEP164Q9UPV0 1460 aa24.5■■□□□ 1.51
MRPS35-202ENST00000536569 WDR62O43379 1518 aa24.5■■□□□ 1.51
MRPS35-202ENST00000536569 FANCD2Q9BXW9 1451 aa24.47■■□□□ 1.51
MRPS35-202ENST00000536569 CCDC88BA6NC98 1476 aa24.33■■□□□ 1.49
MRPS35-202ENST00000536569 PRDM2Q13029 1718 aa24.28■■□□□ 1.48
MRPS35-202ENST00000536569 URB2Q14146 1524 aaKnown RBP24.24■■□□□ 1.47
MRPS35-202ENST00000536569 ABCC8Q09428 1581 aa24.09■■□□□ 1.45
MRPS35-202ENST00000536569 IFT140Q96RY7 1462 aa24.03■■□□□ 1.44
MRPS35-202ENST00000536569 TOPBP1Q92547 1522 aa24.03■■□□□ 1.44
MRPS35-202ENST00000536569 DNMBPQ6XZF7 1577 aa23.98■■□□□ 1.43
MRPS35-202ENST00000536569 OSCARQ8IYS5 282 aa23.94■■□□□ 1.42
MRPS35-202ENST00000536569 ZNF608Q9ULD9 1512 aaPredicted RBP23.89■■□□□ 1.41
MRPS35-202ENST00000536569 TARBP1Q13395 1621 aaKnown RBP23.8■■□□□ 1.4
MRPS35-202ENST00000536569 POLA1P09884 1462 aaPredicted RBP23.8■■□□□ 1.4
MRPS35-202ENST00000536569 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
MRPS35-202ENST00000536569 SUPT5HO00267 1087 aaKnown RBP23.73■■□□□ 1.39
MRPS35-202ENST00000536569 AQRO60306 1485 aaKnown RBP eCLIP23.7■■□□□ 1.382e-6■■■□□ 14.7
MRPS35-202ENST00000536569 SOGA1O94964 1423 aa23.7■■□□□ 1.38
MRPS35-202ENST00000536569 TRIM41Q8WV44 630 aa23.69■■□□□ 1.38
MRPS35-202ENST00000536569 WDR97A6NE52 1622 aa23.67■■□□□ 1.38
MRPS35-202ENST00000536569 CUX1P39880 1505 aa23.66■■□□□ 1.38
MRPS35-202ENST00000536569 FGD5Q6ZNL6 1462 aa23.66■■□□□ 1.38
MRPS35-202ENST00000536569 RAD54L2Q9Y4B4 1467 aa23.66■■□□□ 1.38
MRPS35-202ENST00000536569 TDRD9Q8NDG6 1382 aaKnown RBP23.59■■□□□ 1.37
MRPS35-202ENST00000536569 CHD1O14646 1710 aa23.53■■□□□ 1.36
MRPS35-202ENST00000536569 RIMBP3CA6NJZ7 1639 aa23.53■■□□□ 1.36
MRPS35-202ENST00000536569 RIMBP3BA6NNM3 1639 aa23.53■■□□□ 1.36
MRPS35-202ENST00000536569 RIMBP3Q9UFD9 1639 aa23.53■■□□□ 1.36
MRPS35-202ENST00000536569 ARHGEF11O15085 1522 aa23.5■■□□□ 1.35
MRPS35-202ENST00000536569 FBLN2P98095 1184 aa23.5■■□□□ 1.35
MRPS35-202ENST00000536569 GRIN2BQ13224 1484 aa23.49■■□□□ 1.35
MRPS35-202ENST00000536569 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
MRPS35-202ENST00000536569 SNAPC4Q5SXM2 1469 aa23.48■■□□□ 1.35
MRPS35-202ENST00000536569 ABCA10Q8WWZ4 1543 aa23.45■■□□□ 1.34
MRPS35-202ENST00000536569 GAPVD1Q14C86 1478 aa23.43■■□□□ 1.34
MRPS35-202ENST00000536569 CHMP7Q8WUX9 453 aaPredicted RBP23.42■■□□□ 1.34
MRPS35-202ENST00000536569 WRNQ14191 1432 aaPredicted RBP eCLIP23.41■■□□□ 1.34
MRPS35-202ENST00000536569 SYNJ2O15056 1496 aa23.4■■□□□ 1.34
MRPS35-202ENST00000536569 TOP2BQ02880 1626 aa23.37■■□□□ 1.33
MRPS35-202ENST00000536569 ABCA5Q8WWZ7 1642 aa23.37■■□□□ 1.33
MRPS35-202ENST00000536569 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
MRPS35-202ENST00000536569 SYNJ1O43426 1573 aa23.36■■□□□ 1.33
MRPS35-202ENST00000536569 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
MRPS35-202ENST00000536569 CLASP1Q7Z460 1538 aa23.33■■□□□ 1.33
MRPS35-202ENST00000536569 CYB5RLQ6IPT4 315 aa23.3■■□□□ 1.32
MRPS35-202ENST00000536569 ARAP1Q96P48 1450 aa23.28■■□□□ 1.32
MRPS35-202ENST00000536569 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
MRPS35-202ENST00000536569 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
MRPS35-202ENST00000536569 GRIN2AQ12879 1464 aa23.17■■□□□ 1.3
MRPS35-202ENST00000536569 FHAD1B1AJZ9 1412 aa23.16■■□□□ 1.3
MRPS35-202ENST00000536569 NUP160Q12769 1436 aa23.11■■□□□ 1.29
MRPS35-202ENST00000536569 CEP170Q5SW79 1584 aa23.04■■□□□ 1.28
MRPS35-202ENST00000536569 SHROOM2Q13796 1616 aa22.97■■□□□ 1.27
MRPS35-202ENST00000536569 TRHP20396 242 aaPredicted RBP22.97■■□□□ 1.27
MRPS35-202ENST00000536569 KIF27Q86VH2 1401 aa22.94■■□□□ 1.26
MRPS35-202ENST00000536569 ERCC6L2Q5T890 1561 aa22.9■■□□□ 1.26
MRPS35-202ENST00000536569 IGF1RP08069 1367 aa22.89■■□□□ 1.26
MRPS35-202ENST00000536569 JPH4Q96JJ6 628 aa22.87■■□□□ 1.25
MRPS35-202ENST00000536569 CUL7Q14999 1698 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms