RNA–Protein interactions for RNA: ENST00000536483.1

PRKDC-207, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 834 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-207ENST00000536483 NISCHQ9Y2I1 1504 aa30.98■■■□□ 2.55
PRKDC-207ENST00000536483 ABCC9O60706 1549 aa27.97■■■□□ 2.07
PRKDC-207ENST00000536483 CCDC180Q9P1Z9 1646 aa27.77■■■□□ 2.04
PRKDC-207ENST00000536483 RB1CC1Q8TDY2 1594 aa26.52■■□□□ 1.84
PRKDC-207ENST00000536483 DNAJC5BQ9UF47 199 aa26.36■■□□□ 1.81
PRKDC-207ENST00000536483 NACADO15069 1562 aa26.32■■□□□ 1.8
PRKDC-207ENST00000536483 DCAF8L2P0C7V8 631 aa26.29■■□□□ 1.8
PRKDC-207ENST00000536483 PABPN1Q86U42 306 aaKnown RBP eCLIP26.07■■□□□ 1.76
PRKDC-207ENST00000536483 MYO15BQ96JP2 1530 aa25.9■■□□□ 1.74
PRKDC-207ENST00000536483 UNC13AQ9UPW8 1703 aa25.89■■□□□ 1.74
PRKDC-207ENST00000536483 BICRAQ9NZM4 1560 aa25.76■■□□□ 1.71
PRKDC-207ENST00000536483 ZCCHC6Q5VYS8 1495 aaKnown RBP25.64■■□□□ 1.69
PRKDC-207ENST00000536483 DCAF1Q9Y4B6 1507 aa25.54■■□□□ 1.68
PRKDC-207ENST00000536483 SHROOM4Q9ULL8 1493 aa25.36■■□□□ 1.65
PRKDC-207ENST00000536483 SCRIBQ14160 1630 aa25.36■■□□□ 1.65
PRKDC-207ENST00000536483 CC2D2AQ9P2K1 1620 aa25.22■■□□□ 1.63
PRKDC-207ENST00000536483 CECR2Q9BXF3 1484 aa25.19■■□□□ 1.62
PRKDC-207ENST00000536483 EIF4G1Q04637 1599 aaKnown RBP25.14■■□□□ 1.62
PRKDC-207ENST00000536483 NCAPD3P42695 1498 aa24.32■■□□□ 1.48
PRKDC-207ENST00000536483 DNAJC5Q9H3Z4 198 aa24.25■■□□□ 1.47
PRKDC-207ENST00000536483 ATAD2BQ9ULI0 1458 aa24.25■■□□□ 1.47
PRKDC-207ENST00000536483 SMARCA4P51532 1647 aa24.16■■□□□ 1.46
PRKDC-207ENST00000536483 ERCC6Q03468 1493 aa24.14■■□□□ 1.46
PRKDC-207ENST00000536483 SMARCA2P51531 1590 aa24.13■■□□□ 1.45
PRKDC-207ENST00000536483 CUX2O14529 1486 aa24.1■■□□□ 1.45
PRKDC-207ENST00000536483 HMGXB3Q12766 1538 aa24.1■■□□□ 1.45
PRKDC-207ENST00000536483 BAZ1AQ9NRL2 1556 aaPredicted RBP24.03■■□□□ 1.44
PRKDC-207ENST00000536483 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
PRKDC-207ENST00000536483 NESP48681 1621 aa23.99■■□□□ 1.43
PRKDC-207ENST00000536483 PEG3Q9GZU2 1588 aa23.91■■□□□ 1.42
PRKDC-207ENST00000536483 MROH2BQ7Z745 1585 aa23.88■■□□□ 1.41
PRKDC-207ENST00000536483 LAMC3Q9Y6N6 1575 aa23.76■■□□□ 1.39
PRKDC-207ENST00000536483 THOC2Q8NI27 1593 aaKnown RBP23.71■■□□□ 1.39
PRKDC-207ENST00000536483 PDS5BQ9NTI5 1447 aa23.66■■□□□ 1.38
PRKDC-207ENST00000536483 KIF21AQ7Z4S6 1674 aa23.62■■□□□ 1.37
PRKDC-207ENST00000536483 CADPSQ9ULU8 1353 aa23.6■■□□□ 1.37
PRKDC-207ENST00000536483 WIZO95785 1651 aa23.57■■□□□ 1.36
PRKDC-207ENST00000536483 MRC2Q9UBG0 1479 aa23.45■■□□□ 1.34
PRKDC-207ENST00000536483 WDR62O43379 1518 aa23.38■■□□□ 1.33
PRKDC-207ENST00000536483 RSF1Q96T23 1441 aaPredicted RBP23.36■■□□□ 1.33
PRKDC-207ENST00000536483 CEP164Q9UPV0 1460 aa23.34■■□□□ 1.33
PRKDC-207ENST00000536483 FANCD2Q9BXW9 1451 aa23.32■■□□□ 1.32
PRKDC-207ENST00000536483 CFTRP13569 1480 aa23.3■■□□□ 1.32
PRKDC-207ENST00000536483 TOP2AP11388 1531 aaKnown RBP23.26■■□□□ 1.31
PRKDC-207ENST00000536483 TRIM41Q8WV44 630 aa23.18■■□□□ 1.3
PRKDC-207ENST00000536483 URB2Q14146 1524 aaKnown RBP23.13■■□□□ 1.29
PRKDC-207ENST00000536483 OSCARQ8IYS5 282 aa23.04■■□□□ 1.28
PRKDC-207ENST00000536483 CCDC88BA6NC98 1476 aa23.03■■□□□ 1.28
PRKDC-207ENST00000536483 PRDM2Q13029 1718 aa22.96■■□□□ 1.27
PRKDC-207ENST00000536483 ZNF608Q9ULD9 1512 aaPredicted RBP22.88■■□□□ 1.25
PRKDC-207ENST00000536483 IFT140Q96RY7 1462 aa22.88■■□□□ 1.25
PRKDC-207ENST00000536483 TOPBP1Q92547 1522 aa22.87■■□□□ 1.25
PRKDC-207ENST00000536483 ABCC8Q09428 1581 aa22.79■■□□□ 1.24
PRKDC-207ENST00000536483 DNMBPQ6XZF7 1577 aa22.75■■□□□ 1.23
PRKDC-207ENST00000536483 EIF4G3O43432 1585 aaKnown RBP22.7■■□□□ 1.22
PRKDC-207ENST00000536483 RIMBP3CA6NJZ7 1639 aa22.7■■□□□ 1.22
PRKDC-207ENST00000536483 RIMBP3BA6NNM3 1639 aa22.7■■□□□ 1.22
PRKDC-207ENST00000536483 RIMBP3Q9UFD9 1639 aa22.7■■□□□ 1.22
PRKDC-207ENST00000536483 AQRO60306 1485 aaKnown RBP eCLIP22.67■■□□□ 1.22
PRKDC-207ENST00000536483 TARBP1Q13395 1621 aaKnown RBP22.64■■□□□ 1.22
PRKDC-207ENST00000536483 ARHGEF11O15085 1522 aa22.63■■□□□ 1.21
PRKDC-207ENST00000536483 POLA1P09884 1462 aaPredicted RBP22.63■■□□□ 1.21
PRKDC-207ENST00000536483 FBLN2P98095 1184 aa22.58■■□□□ 1.21
PRKDC-207ENST00000536483 RAD54L2Q9Y4B4 1467 aa22.57■■□□□ 1.2
PRKDC-207ENST00000536483 CYB5RLQ6IPT4 315 aa22.54■■□□□ 1.2
PRKDC-207ENST00000536483 SOGA1O94964 1423 aa22.54■■□□□ 1.2
PRKDC-207ENST00000536483 CHD1O14646 1710 aa22.54■■□□□ 1.2
PRKDC-207ENST00000536483 TDRD9Q8NDG6 1382 aaKnown RBP22.53■■□□□ 1.2
PRKDC-207ENST00000536483 FGD5Q6ZNL6 1462 aa22.47■■□□□ 1.19
PRKDC-207ENST00000536483 CUX1P39880 1505 aa22.43■■□□□ 1.18
PRKDC-207ENST00000536483 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
PRKDC-207ENST00000536483 ARAP1Q96P48 1450 aa22.41■■□□□ 1.18
PRKDC-207ENST00000536483 CHMP7Q8WUX9 453 aaPredicted RBP22.38■■□□□ 1.17
PRKDC-207ENST00000536483 WDR97A6NE52 1622 aa22.37■■□□□ 1.17
PRKDC-207ENST00000536483 SUPT5HO00267 1087 aaKnown RBP22.35■■□□□ 1.17
PRKDC-207ENST00000536483 GRIN2BQ13224 1484 aa22.34■■□□□ 1.17
PRKDC-207ENST00000536483 MAGI1Q96QZ7 1491 aaPredicted RBP22.33■■□□□ 1.16
PRKDC-207ENST00000536483 TRHP20396 242 aaPredicted RBP22.31■■□□□ 1.16
PRKDC-207ENST00000536483 CLASP1Q7Z460 1538 aa22.3■■□□□ 1.16
PRKDC-207ENST00000536483 SYNJ1O43426 1573 aa22.27■■□□□ 1.16
PRKDC-207ENST00000536483 SYNJ2O15056 1496 aa22.27■■□□□ 1.16
PRKDC-207ENST00000536483 GAPVD1Q14C86 1478 aa22.25■■□□□ 1.15
PRKDC-207ENST00000536483 ABCA10Q8WWZ4 1543 aa22.21■■□□□ 1.15
PRKDC-207ENST00000536483 PBRM1Q86U86 1689 aa22.19■■□□□ 1.14
PRKDC-207ENST00000536483 ABCA5Q8WWZ7 1642 aa22.15■■□□□ 1.14
PRKDC-207ENST00000536483 WRNQ14191 1432 aaPredicted RBP eCLIP22.11■■□□□ 1.13
PRKDC-207ENST00000536483 GRIN2AQ12879 1464 aa22.04■■□□□ 1.12
PRKDC-207ENST00000536483 TOP2BQ02880 1626 aa22.02■■□□□ 1.12
PRKDC-207ENST00000536483 BIVM-ERCC5R4GMW8 1640 aa22.01■■□□□ 1.11
PRKDC-207ENST00000536483 ADAMTS12P58397 1594 aa21.99■■□□□ 1.11
PRKDC-207ENST00000536483 ERCC6L2Q5T890 1561 aa21.98■■□□□ 1.11
PRKDC-207ENST00000536483 NUP160Q12769 1436 aa21.97■■□□□ 1.11
PRKDC-207ENST00000536483 FHAD1B1AJZ9 1412 aa21.97■■□□□ 1.11
PRKDC-207ENST00000536483 CEP170Q5SW79 1584 aa21.96■■□□□ 1.11
PRKDC-207ENST00000536483 ERICH3Q5RHP9 1530 aa21.9■■□□□ 1.1
PRKDC-207ENST00000536483 SHROOM2Q13796 1616 aa21.85■■□□□ 1.09
PRKDC-207ENST00000536483 JPH4Q96JJ6 628 aa21.8■■□□□ 1.08
PRKDC-207ENST00000536483 PRG4Q92954 1404 aaPredicted RBP21.8■■□□□ 1.08
PRKDC-207ENST00000536483 AEBP2Q6ZN18 517 aaPredicted RBP21.72■■□□□ 1.07
PRKDC-207ENST00000536483 RUSC2Q8N2Y8 1516 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms