RNA–Protein interactions for RNA: ENST00000536196.1

CHFR-212, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 4

Gene CHFR, Length 597 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-212ENST00000536196 NISCHQ9Y2I1 1504 aa52.05■■■■■ 5.92
CHFR-212ENST00000536196 CCDC180Q9P1Z9 1646 aa46.62■■■■■ 5.05
CHFR-212ENST00000536196 ABCC9O60706 1549 aa46.03■■■■■ 4.96
CHFR-212ENST00000536196 RB1CC1Q8TDY2 1594 aa44.1■■■■■ 4.65
CHFR-212ENST00000536196 NACADO15069 1562 aa43.9■■■■■ 4.62
CHFR-212ENST00000536196 DCAF8L2P0C7V8 631 aa43.65■■■■■ 4.58
CHFR-212ENST00000536196 MYO15BQ96JP2 1530 aa43.44■■■■■ 4.54
CHFR-212ENST00000536196 ZCCHC6Q5VYS8 1495 aaKnown RBP43.25■■■■■ 4.51
CHFR-212ENST00000536196 UNC13AQ9UPW8 1703 aa43.19■■■■■ 4.5
CHFR-212ENST00000536196 DCAF1Q9Y4B6 1507 aa43.06■■■■■ 4.48
CHFR-212ENST00000536196 PABPN1Q86U42 306 aaKnown RBP eCLIP42.87■■■■■ 4.45
CHFR-212ENST00000536196 BICRAQ9NZM4 1560 aa42.76■■■■■ 4.44
CHFR-212ENST00000536196 DNAJC5BQ9UF47 199 aa42.67■■■■■ 4.42
CHFR-212ENST00000536196 SCRIBQ14160 1630 aa42.44■■■■■ 4.38
CHFR-212ENST00000536196 SHROOM4Q9ULL8 1493 aa42.28■■■■■ 4.36
CHFR-212ENST00000536196 EIF4G1Q04637 1599 aaKnown RBP41.68■■■■■ 4.26
CHFR-212ENST00000536196 CC2D2AQ9P2K1 1620 aa41.66■■■■■ 4.26
CHFR-212ENST00000536196 CECR2Q9BXF3 1484 aa41.43■■■■■ 4.22
CHFR-212ENST00000536196 SMARCA4P51532 1647 aa40.55■■■■■ 4.08
CHFR-212ENST00000536196 NCAPD3P42695 1498 aa40.46■■■■■ 4.07
CHFR-212ENST00000536196 BAZ1AQ9NRL2 1556 aaPredicted RBP40.41■■■■■ 4.06
CHFR-212ENST00000536196 ATAD2BQ9ULI0 1458 aa40.41■■■■■ 4.06
CHFR-212ENST00000536196 SMARCA2P51531 1590 aa40.39■■■■■ 4.06
CHFR-212ENST00000536196 HMGXB3Q12766 1538 aa40.27■■■■■ 4.04
CHFR-212ENST00000536196 PEG3Q9GZU2 1588 aa40.15■■■■■ 4.02
CHFR-212ENST00000536196 MROH2BQ7Z745 1585 aa40.1■■■■■ 4.01
CHFR-212ENST00000536196 BAZ1BQ9UIG0 1483 aaKnown RBP40.07■■■■■ 4.01
CHFR-212ENST00000536196 ERCC6Q03468 1493 aa39.75■■■■□ 3.95
CHFR-212ENST00000536196 WIZO95785 1651 aa39.69■■■■□ 3.94
CHFR-212ENST00000536196 NESP48681 1621 aa39.67■■■■□ 3.94
CHFR-212ENST00000536196 LAMC3Q9Y6N6 1575 aa39.55■■■■□ 3.92
CHFR-212ENST00000536196 CUX2O14529 1486 aa39.53■■■■□ 3.92
CHFR-212ENST00000536196 RSF1Q96T23 1441 aaPredicted RBP39.41■■■■□ 3.9
CHFR-212ENST00000536196 KIF21AQ7Z4S6 1674 aa39.29■■■■□ 3.88
CHFR-212ENST00000536196 THOC2Q8NI27 1593 aaKnown RBP39.25■■■■□ 3.87
CHFR-212ENST00000536196 PDS5BQ9NTI5 1447 aa39.25■■■■□ 3.87
CHFR-212ENST00000536196 CADPSQ9ULU8 1353 aa39.24■■■■□ 3.87
CHFR-212ENST00000536196 TOP2AP11388 1531 aaKnown RBP39.22■■■■□ 3.87
CHFR-212ENST00000536196 CFTRP13569 1480 aa38.92■■■■□ 3.82
CHFR-212ENST00000536196 MRC2Q9UBG0 1479 aa38.9■■■■□ 3.82
CHFR-212ENST00000536196 DNAJC5Q9H3Z4 198 aa38.89■■■■□ 3.82
CHFR-212ENST00000536196 CEP164Q9UPV0 1460 aa38.85■■■■□ 3.81
CHFR-212ENST00000536196 FANCD2Q9BXW9 1451 aa38.82■■■■□ 3.81
CHFR-212ENST00000536196 WDR62O43379 1518 aa38.8■■■■□ 3.8
CHFR-212ENST00000536196 PRDM2Q13029 1718 aa38.76■■■■□ 3.8
CHFR-212ENST00000536196 CCDC88BA6NC98 1476 aa38.72■■■■□ 3.79
CHFR-212ENST00000536196 URB2Q14146 1524 aaKnown RBP38.47■■■■□ 3.75
CHFR-212ENST00000536196 TOPBP1Q92547 1522 aa38.15■■■■□ 3.7
CHFR-212ENST00000536196 ABCC8Q09428 1581 aa38.13■■■■□ 3.69
CHFR-212ENST00000536196 DNMBPQ6XZF7 1577 aa38.09■■■■□ 3.69
CHFR-212ENST00000536196 IFT140Q96RY7 1462 aa38.04■■■■□ 3.68
CHFR-212ENST00000536196 SUPT5HO00267 1087 aaKnown RBP37.98■■■■□ 3.67
CHFR-212ENST00000536196 ZNF608Q9ULD9 1512 aaPredicted RBP37.9■■■■□ 3.66
CHFR-212ENST00000536196 TARBP1Q13395 1621 aaKnown RBP37.81■■■■□ 3.64
CHFR-212ENST00000536196 EIF4G3O43432 1585 aaKnown RBP37.8■■■■□ 3.64
CHFR-212ENST00000536196 POLA1P09884 1462 aaPredicted RBP37.78■■■■□ 3.64
CHFR-212ENST00000536196 OSCARQ8IYS5 282 aa37.74■■■■□ 3.63
CHFR-212ENST00000536196 CUX1P39880 1505 aa37.66■■■■□ 3.62
CHFR-212ENST00000536196 FGD5Q6ZNL6 1462 aa37.62■■■■□ 3.61
CHFR-212ENST00000536196 AQRO60306 1485 aaKnown RBP eCLIP37.61■■■■□ 3.61
CHFR-212ENST00000536196 RAD54L2Q9Y4B4 1467 aa37.61■■■■□ 3.61
CHFR-212ENST00000536196 SOGA1O94964 1423 aa37.6■■■■□ 3.61
CHFR-212ENST00000536196 WDR97A6NE52 1622 aa37.51■■■■□ 3.6
CHFR-212ENST00000536196 CHD1O14646 1710 aa37.48■■■■□ 3.59
CHFR-212ENST00000536196 TDRD9Q8NDG6 1382 aaKnown RBP37.43■■■■□ 3.58
CHFR-212ENST00000536196 TRIM41Q8WV44 630 aa37.39■■■■□ 3.58
CHFR-212ENST00000536196 RIMBP3CA6NJZ7 1639 aa37.28■■■■□ 3.56
CHFR-212ENST00000536196 RIMBP3BA6NNM3 1639 aa37.28■■■■□ 3.56
CHFR-212ENST00000536196 RIMBP3Q9UFD9 1639 aa37.28■■■■□ 3.56
CHFR-212ENST00000536196 SNAPC4Q5SXM2 1469 aa37.27■■■■□ 3.56
CHFR-212ENST00000536196 FBLN2P98095 1184 aa37.26■■■■□ 3.56
CHFR-212ENST00000536196 BIVM-ERCC5R4GMW8 1640 aa37.25■■■■□ 3.55
CHFR-212ENST00000536196 GRIN2BQ13224 1484 aa37.25■■■■□ 3.55
CHFR-212ENST00000536196 PBRM1Q86U86 1689 aa37.25■■■■□ 3.55
CHFR-212ENST00000536196 ABCA10Q8WWZ4 1543 aa37.23■■■■□ 3.55
CHFR-212ENST00000536196 TOP2BQ02880 1626 aa37.22■■■■□ 3.55
CHFR-212ENST00000536196 MAGI1Q96QZ7 1491 aaPredicted RBP37.22■■■■□ 3.55
CHFR-212ENST00000536196 WRNQ14191 1432 aaPredicted RBP eCLIP37.19■■■■□ 3.541e-6■■■■■ 52.5
CHFR-212ENST00000536196 ARHGEF11O15085 1522 aa37.18■■■■□ 3.54
CHFR-212ENST00000536196 GAPVD1Q14C86 1478 aa37.18■■■■□ 3.54
CHFR-212ENST00000536196 SYNJ1O43426 1573 aa37.17■■■■□ 3.54
CHFR-212ENST00000536196 ABCA5Q8WWZ7 1642 aa37.17■■■■□ 3.54
CHFR-212ENST00000536196 SYNJ2O15056 1496 aa37.07■■■■□ 3.53
CHFR-212ENST00000536196 CHMP7Q8WUX9 453 aaPredicted RBP37.07■■■■□ 3.52
CHFR-212ENST00000536196 CLASP1Q7Z460 1538 aa36.99■■■■□ 3.51
CHFR-212ENST00000536196 ADAMTS12P58397 1594 aa36.86■■■■□ 3.49
CHFR-212ENST00000536196 ARAP1Q96P48 1450 aa36.83■■■■□ 3.49
CHFR-212ENST00000536196 CYB5RLQ6IPT4 315 aa36.81■■■■□ 3.48
CHFR-212ENST00000536196 ERICH3Q5RHP9 1530 aa36.8■■■■□ 3.48
CHFR-212ENST00000536196 GRIN2AQ12879 1464 aa36.77■■■■□ 3.48
CHFR-212ENST00000536196 FHAD1B1AJZ9 1412 aa36.72■■■■□ 3.47
CHFR-212ENST00000536196 CEP170Q5SW79 1584 aa36.63■■■■□ 3.45
CHFR-212ENST00000536196 NUP160Q12769 1436 aa36.62■■■■□ 3.45
CHFR-212ENST00000536196 KIF27Q86VH2 1401 aa36.47■■■■□ 3.43
CHFR-212ENST00000536196 SHROOM2Q13796 1616 aa36.47■■■■□ 3.43
CHFR-212ENST00000536196 ERCC6L2Q5T890 1561 aa36.41■■■■□ 3.42
CHFR-212ENST00000536196 CUL7Q14999 1698 aa36.41■■■■□ 3.42
CHFR-212ENST00000536196 IGF1RP08069 1367 aa36.34■■■■□ 3.41
CHFR-212ENST00000536196 RUSC2Q8N2Y8 1516 aa36.33■■■■□ 3.41
CHFR-212ENST00000536196 TRHP20396 242 aaPredicted RBP36.27■■■■□ 3.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms